Ross Sozzani

Functional annotation of proteins for signaling network inference in non-model species

NATURE COMMUNICATIONS, 14(1).

Phosphate starvation: response mechanisms and solutions

Madison, I., Gillan, L., Peace, J., Gabrieli, F., Broeck, L., Jones, J. L., & Sozzani, R. (2023, August 23). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 8.

The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice

Beretta, V. M., Franchini, E., Din, I. U., Lacchini, E., Broeck, L., Sozzani, R., … Kater, M. M. (2023, April 21). PLANT JOURNAL, Vol. 4.

Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development

ENVIRONMENTAL AND EXPERIMENTAL BOTANY, 195.

Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation

PLANT CELL, 34(1), 535–556.

POPEYE intercellular localization mediates cell-specific iron deficiency responses

Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). PLANT PHYSIOLOGY, Vol. 8.

RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry

FRONTIERS IN GENETICS, 12.

Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization

SCIENCE, 374(6575), 1577-+.

Divide and Conquer: The Initiation and Proliferation of Meristems

[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 147–156.

Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response

HORTICULTURE RESEARCH, 8(1).

Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis

NATURE COMMUNICATIONS, 12(1).

Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots

MOLECULAR SYSTEMS BIOLOGY, 17(6).

Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification

MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 47–65.

BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(51), 32750–32756.

BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana

In Methods in Cell Biology (Vol. 160, pp. 419–436).

Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth

Van Norman, J. M., Strader, L. C., & Sozzani, R. (2020, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 57, pp. A1–A3.

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling

Frontiers in Genetics, 11.

MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy

In Methods in Cell Biology (Vol. 160, pp. 405–418).

Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big

Annual Review of Plant Biology, 71(1), 789–816.

Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division

Proceedings of the National Academy of Sciences, 117(26), 15332–15342.

tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks

PLANT JOURNAL, 101(3), 716–730.

Automated Imaging, Tracking, and Analytics Pipeline for Differentiating Environmental Effects on Root Meristematic Cell Division

Frontiers in Plant Science, 10.

Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development

Plant Biotechnology Journal, 18(4), 929–943.

Computational prediction of gene regulatory networks in plant growth and development

Current Opinion in Plant Biology, 47, 96–105.

DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW

CURRENT BIOLOGY, 29(3), 520-+.

Mobile PEAR transcription factors integrate hormone and miRNA cues to prime cambial growth

Nature, 565(7740), 490–494.

Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana

MOLECULAR CELL, 76(1), 177-+.

Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks

NATURE COMMUNICATIONS, 10.

The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size

CURRENT BIOLOGY, 29(7), 1199-+.

Exposure to heavy metal stress triggers changes in plasmodesmatal permeability via deposition and breakdown of callose

JOURNAL OF EXPERIMENTAL BOTANY, 69(15), 3715–3728.

GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis

DEVELOPMENT, 145(3).

Identifying Differentially Expressed Genes Using Fluorescence-Activated Cell Sorting (FACS) and RNA Sequencing from Low Input Samples

In L. von Stechow & A. Santos Delgado (Eds.), Computational Cell Biology (pp. 139–151).

Tracking Gene Expression via Light Sheet Microscopy and Computer Vision in Living Organisms

2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 818–821.

Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7641–E7649.

Dose-Duration Reciprocity for G protein activation: Modulation of kinase to substrate ratio alters cell signaling

PLOS ONE, 12(12).

Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(42), E8922–E8929.

Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii

PLANT PHYSIOLOGY, 175(1), 376–391.

Inferring Gene Regulatory Networks in the Arabidopsis Root Using a Dynamic Bayesian Network Approach

In K. Kaufmann & B. Mueller-Roeber (Eds.), Plant Gene Regulatory Networks (pp. 331–348).

Measuring Protein Movement, Oligomerization State, and Protein–Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spectroscopy (Scanning FCS)

In W. Busch (Ed.), Plant Genomics (pp. 251–266).

Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7632–E7640.

Gene and networks regulating the root stem cell niche of Arabidopsis

Curr Opin Plant Biol, 29, 38–43.

Light sheet microscopy reveals more gradual light attenuation in light-green versus dark-green soybean leaves

JOURNAL OF EXPERIMENTAL BOTANY, 67(15), 4697–4709.

Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) for long term imaging in the ZEISS Lightsheet Z.1

Developmental Biology, 419(1), 19–25.

Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy

Elife, 5.

Bird and Scarecrow proteins organize tissue formation in Arabidopsis roots

Science, 350(6259), 426–430.

Advanced imaging techniques for the study of plant growth and development

[Review of ]. TRENDS IN PLANT SCIENCE, 19(5), 304–310.

Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root

[Review of ]. Frontiers in Plant Science, 5.

Intercellular Protein Movement: Deciphering the Language of Development

ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 30, Vol. 30, pp. 207–233.

Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants

[Review of ]. ANNALS OF BOTANY, 113(7), 1083–1105.

Postembryonic control of root meristem growth and development

[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 17, 7–12.

Spatial Coordination between Stem Cell Activity and Cell Differentiation in the Root Meristem

Developmental Cell, 26(4), 405–415.

A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division

Cell, 150(5), 1002–1015.

Integrative systems biology: an attempt to describe a simple weed

Current Opinion in Plant Biology, 15(2), 162–167.

Arabidopsis homologs of the petunia hairy meristem gene are required for maintenance of shoot and root indeterminacy

Plant Physiology, 155(2), 735–750.

High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype

Genome Biology, 12(3), 219.

Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth

Nature, 466(7302), 128–132.

The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis

Plant Molecular Biology, 72(4-5), 381–395.

The SHR/SCR pathway directly activates genes involved in asymmetric cell division in the Arabidopsis root

Nature, 466(7302), 128–132.

Development rooted in interwoven networks

Developmental Biology, 331(2), 386.

The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function

The New Phytologist, 184(2), 311–322.

Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection

Plant Physiology, 148(1), 436–454.

Interplay between Arabidopsis Activating Factors E2Fb and E2Fa in Cell Cycle Progression and Development

Plant Physiology, 140(4), 1355–1366.

Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis

The Plant Journal: For Cell and Molecular Biology, 47(3), 395–407.