2024 article
"Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development" (vol 195, 104768, 2022)
Ortiz, A. C., De Smet, I., Sozzani, R., & Locke, A. M. (2024, April). ENVIRONMENTAL AND EXPERIMENTAL BOTANY, Vol. 220.
2024 article
Cell-material interactions in 3D bioprinted plant cells
Madison, I., Tahir, M., Broeck, L. V., Phan, L., Horn, T., & Sozzani, R. (2024, February 1).
2024 article
Global-to-Local Dependencies in Phosphorus Mass Flows and Markets: Pathways to Improving System Resiliency in Response to Exogenous Shocks
Baker, J., Schunk, N., Scholz, M., Merck, A., Muenich, R. L., Westerhoff, P., … Mayer, B. K. (2024, May 7). ENVIRONMENTAL SCIENCE & TECHNOLOGY LETTERS, Vol. 5.
2024 journal article
Insights into multilevel spatial regulation within the root stem cell niche
CURRENT OPINION IN GENETICS & DEVELOPMENT, 86.
2024 article
Philip Benfey (1953-2023)
Birnbaum, K. D., Brady, S. M., Gallagher, K. L., Jung, J., Pourquie, O., Scheres, B., … Strader, L. (2024, September 17). NATURE PLANTS, Vol. 9.
2024 article
The Black American experience: Answering the global challenge of broadening participation in STEM/agriculture
Haverroth, E., Gobble, M., Bradley, L., Harris-Gilliam, K., Fischer, A., Williams, C., … Sozzani, R. (2024, January 29). PLANT CELL, Vol. 1.
2023 journal article
Functional annotation of proteins for signaling network inference in non-model species
Nature Communications, 14(1).
2023 article
Obituary Philip N. Benfey (1953-2023)
Bennett, M. J., Brady, S. M., Dinneny, J. R., Helariutta, Y., & Sozzani, R. (2023, November 20). DEVELOPMENTAL CELL, Vol. 58, pp. 2413–2415.
2023 article
Phosphate starvation: response mechanisms and solutions
Madison, I., Gillan, L., Peace, J., Gabrieli, F., Broeck, L., Jones, J. L., & Sozzani, R. (2023, August 23). (D. Ort, Ed.). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 8.
Ed(s): D. Ort
2023 conference paper
Prediction and functional characterization of transcriptional activation domains
Mahatma, S., Broeck, L. V., Morffy, N., Staller, M. V., Strader, L. C., & Sozzani, R. (2023, March 22).
2023 article
Quantitative Modeling of the Short-Term Response to Nitrogen Availability that Coordinates Early Events in Lateral Root Initiation
Gaudinier, A., Broeck, L. V., Moreno-Risueño, M., Rodriguez-Medina, J., Sozzani, R., & Brady, S. M. (2023, December 6).
2023 article
The ALOG family members OsG1L1 and OsG1L2 regulate inflorescence branching in rice
Beretta, V. M., Franchini, E., Din, I. U., Lacchini, E., Broeck, L., Sozzani, R., … Kater, M. M. (2023, April 21). PLANT JOURNAL, Vol. 4.
2022 article
POPEYE intercellular localization mediates cell-specific iron deficiency responses
Muhammad, D. S., Clark, N. M., Haque, S., Williams, C. M., Sozzani, R., & Long, T. A. (2022, August 3). PLANT PHYSIOLOGY, Vol. 8.
2022 journal article
RNA-Seq and Gene Regulatory Network Analyses Uncover Candidate Genes in the Early Defense to Two Hemibiotrophic Colletorichum spp. in Strawberry
FRONTIERS IN GENETICS, 12.
2021 journal article
A hybrid model connecting regulatory interactions with stem cell divisions in the root
Quantitative Plant Biology, 2.
2021 journal article
Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization
SCIENCE, 374(6575), 1577-+.
2021 review
Divide and Conquer: The Initiation and Proliferation of Meristems
[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 147–156.
Contributors: L. Broeck n
2021 journal article
Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response
HORTICULTURE RESEARCH, 8(1).
2021 journal article
Field-grown soybean shows genotypic variation in physiological and seed composition responses to heat stress during seed development
Environmental and Experimental Botany, 195, 104768.
2021 journal article
Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation
PLANT CELL, 34(1), 535–556.
2021 article
Gene regulatory networks for compatible versus incompatible grafts identify a role for SlWOX4 during junction formation
Thomas, H., Broeck, L. V., Spurney, R., Sozzani, R., & Frank, M. (2021, February 27).
2021 journal article
Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis
NATURE COMMUNICATIONS, 12(1).
2021 journal article
Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots
MOLECULAR SYSTEMS BIOLOGY, 17(6).
2021 article
Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification
MODELING TRANSCRIPTIONAL REGULATION, Vol. 2328, pp. 47–65.
2020 journal article
BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(51), 32750–32756.
2020 chapter
BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana
In Methods in Cell Biology (Vol. 160, pp. 419–436).
Contributors: E. Buckner n, I. Madison n, C. Melvin n, T. Long n , n & C. Williams n
2020 article
Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth
Van Norman, J. M., Strader, L. C., & Sozzani, R. (2020, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 57, pp. A1–A3.
2020 article
Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions
Broeck, L. V., Spurney, R. J., Fisher, A. P., Schwartz, M., Clark, N. M., Nguyen, T. T., … Sozzani, R. (2020, December 1).
2020 journal article
Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling
Frontiers in Genetics, 11.
2020 chapter
MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy
In Methods in Cell Biology (Vol. 160, pp. 405–418).
Contributors: I. Madison n, C. Melvin n, E. Buckner n, C. Williams n , n & T. Long n
2020 journal article
Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big
Annual Review of Plant Biology, 71(1), 789–816.
2020 journal article
Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division
Proceedings of the National Academy of Sciences, 117(26), 15332–15342.
2019 journal article
Automated Imaging, Tracking, and Analytics Pipeline for Differentiating Environmental Effects on Root Meristematic Cell Division
Frontiers in Plant Science, 10.
Contributors: E. Buckner n, I. Madison n, H. Chou n, A. Matthiadis n, C. Melvin n, n , C. Williams n, T. Long n
2019 journal article
Characterizing the involvement of FaMADS9 in the regulation of strawberry fruit receptacle development
Plant Biotechnology Journal, 18(4), 929–943.
2019 journal article
DOF2.1 Controls Cytokinin-Dependent Vascular Cell Proliferation Downstream of TMO5/LHW
CURRENT BIOLOGY, 29(3), 520-+.
2019 journal article
Mobile PEAR transcription factors integrate hormone and miRNA cues to prime cambial growth
Nature, 565(7740), 490–494.
2019 journal article
Nucleo-cytoplasmic Partitioning of ARF Proteins Controls Auxin Responses in Arabidopsis thaliana
MOLECULAR CELL, 76(1), 177-+.
2019 journal article
Stem-cell-ubiquitous genes spatiotemporally coordinate division through regulation of stem-cell-specific gene networks
NATURE COMMUNICATIONS, 10.
2019 journal article
The Lateral Root Cap Acts as an Auxin Sink that Controls Meristem Size
CURRENT BIOLOGY, 29(7), 1199-+.
2019 journal article
tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks
PLANT JOURNAL, 101(3), 716–730.
2018 journal article
Computational prediction of gene regulatory networks in plant growth and development
Current Opinion in Plant Biology, 47, 96–105.
2018 article
Dorsal/NF-κB exhibits a dorsal-to-ventral mobility gradient in the Drosophila embryo
Asafen, H. A., Clark, N. M., Goyal, E., Jacobsen, T., Dima, S. S., Chen, H.-Y., … Reeves, G. T. (2018, May 11).
2018 journal article
Exposure to heavy metal stress triggers changes in plasmodesmatal permeability via deposition and breakdown of callose
JOURNAL OF EXPERIMENTAL BOTANY, 69(15), 3715–3728.
2018 journal article
GTL1 and DF1 regulate root hair growth through transcriptional repression of ROOT HAIR DEFECTIVE 6-LIKE 4 in Arabidopsis
DEVELOPMENT, 145(3).
2018 chapter
Identifying Differentially Expressed Genes Using Fluorescence-Activated Cell Sorting (FACS) and RNA Sequencing from Low Input Samples
In L. von Stechow & A. Santos Delgado (Eds.), Computational Cell Biology (pp. 139–151).
Ed(s): L. Stechow & A. Santos Delgado
2018 conference paper
Tracking Gene Expression via Light Sheet Microscopy and Computer Vision in Living Organisms
2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), 818–821.
Event: 2018 40th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC)
2017 journal article
Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7641–E7649.
2017 journal article
Dose-Duration Reciprocity for G protein activation: Modulation of kinase to substrate ratio alters cell signaling
PLOS ONE, 12(12).
2017 journal article
Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(42), E8922–E8929.
2017 journal article
Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii
PLANT PHYSIOLOGY, 175(1), 376–391.
2017 chapter
Inferring Gene Regulatory Networks in the Arabidopsis Root Using a Dynamic Bayesian Network Approach
In K. Kaufmann & B. Mueller-Roeber (Eds.), Plant Gene Regulatory Networks (pp. 331–348).
Ed(s): K. Kaufmann & B. Mueller-Roeber
2017 chapter
Measuring Protein Movement, Oligomerization State, and Protein–Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spectroscopy (Scanning FCS)
In W. Busch (Ed.), Plant Genomics (pp. 251–266).
Ed(s): W. Busch
2017 journal article
Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7632–E7640.
2016 journal article
Light sheet microscopy reveals more gradual light attenuation in light-green versus dark-green soybean leaves
JOURNAL OF EXPERIMENTAL BOTANY, 67(15), 4697–4709.
2016 journal article
Multi-sample Arabidopsis Growth and Imaging Chamber (MAGIC) for long term imaging in the ZEISS Lightsheet Z.1
Developmental Biology, 419(1), 19–25.
2016 journal article
Tracking transcription factor mobility and interaction in Arabidopsis roots with fluorescence correlation spectroscopy
Elife, 5.
2015 journal article
Bird and Scarecrow proteins organize tissue formation in Arabidopsis roots
Science, 350(6259), 426–430.
2015 journal article
Gene and networks regulating the root stem cell niche of Arabidopsis
Curr Opin Plant Biol, 29, 38–43.
2014 review
Advanced imaging techniques for the study of plant growth and development
[Review of ]. TRENDS IN PLANT SCIENCE, 19(5), 304–310.
2014 review
Experimental data and computational modeling link auxin gradient and development in the Arabidopsis root
[Review of ]. Frontiers in Plant Science, 5.
2014 article
Intercellular Protein Movement: Deciphering the Language of Development
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, VOL 30, Vol. 30, pp. 207–233.
2014 review
Omics and modelling approaches for understanding regulation of asymmetric cell divisions in arabidopsis and other angiosperm plants
[Review of ]. ANNALS OF BOTANY, 113(7), 1083–1105.
2013 review
Postembryonic control of root meristem growth and development
[Review of ]. CURRENT OPINION IN PLANT BIOLOGY, 17, 7–12.
2013 journal article
Spatial Coordination between Stem Cell Activity and Cell Differentiation in the Root Meristem
Developmental Cell, 26(4), 405–415.
2012 journal article
A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division
Cell, 150(5), 1002–1015.
2012 journal article
Integrative systems biology: an attempt to describe a simple weed
Current Opinion in Plant Biology, 15(2), 162–167.
2011 journal article
High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype
Genome Biology, 12(3), 219.
2010 journal article
Arabidopsis homologs of the petunia hairy meristem gene are required for maintenance of shoot and root indeterminacy
Plant Physiology, 155(2), 735–750.
2010 journal article
Spatiotemporal regulation of cell-cycle genes by SHORTROOT links patterning and growth
Nature, 466(7302), 128–132.
2010 journal article
The SHR/SCR pathway directly activates genes involved in asymmetric cell division in the Arabidopsis root
Nature, 466(7302), 128–132.
2009 journal article
Development rooted in interwoven networks
Developmental Biology, 331(2), 386.
2009 journal article
The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function
The New Phytologist, 184(2), 311–322.
2009 journal article
The E2FD/DEL2 factor is a component of a regulatory network controlling cell proliferation and development in Arabidopsis
Plant Molecular Biology, 72(4-5), 381–395.
2008 journal article
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection
Plant Physiology, 148(1), 436–454.
2006 journal article
Interplay between Arabidopsis Activating Factors E2Fb and E2Fa in Cell Cycle Progression and Development
Plant Physiology, 140(4), 1355–1366.
2006 journal article
Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis
The Plant Journal: For Cell and Molecular Biology, 47(3), 395–407.
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