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2024 journal article
The development of non-destructive sampling methods of parchment skins for genetic species identification
PLOS ONE, 19(3).
Ed(s): A. Shakoori
2023 journal article
The dogs of Chernobyl: Demographic insights into populations inhabiting the nuclear exclusion zone
SCIENCE ADVANCES, 9(9).
2023 journal article
Whole exome sequencing analysis of canine urothelial carcinomas without BRAF V595E mutation: Short in-frame deletions in BRAF and MAP2K1 suggest alternative mechanisms for MAPK pathway disruption
PLOS GENETICS, 19(4).
Ed(s): T. Leeb
2022 journal article
The AGMK1-9T7 cell model of neoplasia: Evolution of DNA copy-number aberrations and miRNA expression during transition from normal to metastatic cancer cells
PLOS ONE, 17(10).
2021 journal article
Genomically Complex Human Angiosarcoma and Canine Hemangiosarcoma Establish Convergent Angiogenic Transcriptional Programs Driven by Novel Gene Fusions
MOLECULAR CANCER RESEARCH, 19(5), 847–861.
2020 article
A comparative oncology approach to biomarker and drug discovery for cancer diagnosis and treatment in dogs and humans
LeBlanc, A. K., Mazcko, C. N., Breen, M., Thomas, R., & Thamm, D. H. (2020, August). CANCER RESEARCH, Vol. 80.
2020 journal article
Development of a Genome-Wide Oligonucleotide Microarray Platform for Detection of DNA Copy Number Aberrations in Feline Cancers
VETERINARY SCIENCES, 7(3).
2020 article
Molecular mechanisms that activate convergent oncogenic pathway in genomically complex angiosarcoma
Kim, J. H., Megquier, K., Sarver, A. L., Thomas, R., Schulte, A. J., Wang, C., … Modiano, J. F. (2020, August). CANCER RESEARCH, Vol. 80.
2019 journal article
Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma
MOLECULAR CANCER RESEARCH, 17(12), 2410–2421.
2019 journal article
Genome-wide DNA copy number analysis and targeted transcriptional analysis of canine histiocytic malignancies identifies diagnostic signatures and highlights disruption of spindle assembly complex
CHROMOSOME RESEARCH, 27(3), 179–202.
2018 article
Mutational and transcriptomic profiling identify distinct angiogenic and inflammatory subtypes of angiosarcoma
Kim, J. H., Megquier, K., Sarver, A. L., Thomas, R., Wang, C., Elvers, I., … Modiano, J. F. (2018, July). CANCER RESEARCH, Vol. 78.
2017 journal article
Evaluation of gene expression and DNA copy number profiles of adipose tissue-derived stromal cells and consecutive neurosphere-like cells generated from dogs with naturally occurring spinal cord injury
American Journal of Veterinary Research, 78(3), 371–380.
2017 journal article
Genomic profiling of canine mast cell tumors identifies DNA copy number aberrations associated with KIT mutations and high histological grade
CHROMOSOME RESEARCH, 25(2), 129–143.
Contributors: H. Mochizuki n , n, S. Moroff* & M. Breen n
2016 journal article
Integrated immunohistochemical and DNA copy number profiling analysis provides insight into the molecular pathogenesis of canine follicular lymphoma
VETERINARY AND COMPARATIVE ONCOLOGY, 15(3), 852–867.
Contributors: Z. Demeter*, K. Kennedy n, L. Borst n , K. Singh *, V. Valli, K. Le Boedec *, M. Breen n n,
2015 journal article
A novel canine kidney cell line model for the evaluation of neoplastic development: karyotype evolution associated with spontaneous immortalization and tumorigenicity
CHROMOSOME RESEARCH, 23(4), 663–680.
Contributors: R. Omeir*, n, B. Teferedegne*, C. Williams n, G. Foseh*, J. Macauley*, L. Brinster*, J. Beren*
2014 journal article
Canine Prostate Cancer Cell Line (Probasco) Produces Osteoblastic Metastases In Vivo
PROSTATE, 74(13), 1251–1265.
Contributors: J. Simmons*, W. Dirksen *, B. Hildreth *, C. Dorr n, C. Williams n, n, M. Breen n , R. Toribio *, T. Rosol *
2014 journal article
Genomic profiling reveals extensive heterogeneity in somatic DNA copy number aberrations of canine hemangiosarcoma
CHROMOSOME RESEARCH, 22(3), 305–319.
Contributors: L. Borst n , D. Rotroff n, A. Motsinger-Reif n, K. Lindblad-Toh *, J. Modiano *, M. Breen n n,
2013 article
Naturally occuring canine cancers: powerful models for stimulating pharmacogenomic advancement in human medicine
Rotroff, D. M., Thomas, R., Breen, M., & Motsinger-Reif, A. A. (2013, December). PHARMACOGENOMICS, Vol. 14, pp. 1929–1931.
Contributors: D. Rotroff n, n, M. Breen n & A. Motsinger-Reif n
2012 journal article
Alterations of the p53 and PIK3CA/AKT/mTOR pathways in angiosarcomas
Cancer, 118(23), 5878–5887.
Contributors: A. Italiano *, C. Chen *, n, M. Breen n , F. Bonnet*, N. Sevenet *, M. Longy *, R. Maki *, J. Coindre*, C. Antonescu *
2012 journal article
CD40 ligand is necessary and sufficient to support primary diffuse large B-cell lymphoma cells in culture: a tool for in vitro preclinical studies with primary B-cell malignancies
LEUKEMIA & LYMPHOMA, 53(7), 1390–1398.
Contributors: D. Ito *, A. Frantz, C. Williams*, n, R. Burnett*, A. Avery*, M. Breen* , N. Mason *, . T.D. O'Brien, J. Modiano *
2012 conference paper
Generation and characterization of induced pluripotent stem cells (iPS) from adult canine fibroblasts
Reproduction in Domestic Animals, 47, 418–419.
2012 journal article
Growth Requirements and Chromosomal Instability of Induced Pluripotent Stem Cells Generated from Adult Canine Fibroblasts
Stem Cells and Development, 22(6), 951–963.
Contributors: S. Koh n, n, S. Tsai n, S. Bischoff n, J. Lim n, M. Breen n , N. Olby n , J. Piedrahita n
2012 journal article
The miR-17-92 cluster and its target THBS1 are differentially expressed in angiosarcomas dependent on MYC amplification
GENES CHROMOSOMES & CANCER, 51(6), 569–578.
Contributors: A. Italiano *, n, M. Breen n , L. Zhang *, A. Crago *, S. Singer *, R. Khanin*, R. Maki *
2011 journal article
Anchoring the dog to its relatives reveals new evolutionary breakpoints across 11 species of the Canidae and provides new clues for the role of B chromosomes
CHROMOSOME RESEARCH, 19(6), 685–708.
Contributors: S. Duke Becker n, n, V. Trifonov *, R. Wayne *, A. Graphodatsky * & M. Breen n
2011 journal article
Characterization of Canine Osteosarcoma by Array Comparative Genomic Hybridization and RT-qPCR: Signatures of Genomic Imbalance in Canine Osteosarcoma Parallel the Human Counterpart
GENES CHROMOSOMES & CANCER, 50(11), 859–874.
Contributors: A. Angstadt n, A. Motsinger-Reif n, n, W. Kisseberth *, C. Guillermo Couto *, D. Duval *, D. Nielsen n , J. Modiano *, M. Breen n
2011 journal article
FLT3 mutations in canine acute lymphocytic leukemia
BMC CANCER, 11.
2011 journal article
Reading between the lines: molecular characterization of five widely used canine lymphoid tumour cell lines
Veterinary and Comparative Oncology, 11(1), 30–50.
Contributors: E. Seiser n, n, K. Richards n, M. Kathryn Kelley n, P. Moore *, S. Suter n, M. Breen n
2011 journal article
Refining tumor-associated aneuploidy through ‘genomic recoding’ of recurrent DNA copy number aberrations in 150 canine non-Hodgkin lymphomas
Leukemia & Lymphoma, 52(7), 1321–1335.
Contributors: E. Seiser n, A. Motsinger-Reif*, L. Borst n , V. Valli*, K. Kelley n, S. Suter n, D. Argyle* n,
2009 journal article
Extensive conservation of genomic imbalances in canine transmissible venereal tumors (CTVT) detected by microarray-based CGH analysis
CHROMOSOME RESEARCH, 17(7), 927–934.
Contributors: C. Rebbeck *, A. Leroi *, A. Burt * & M. Breen n n,
2009 journal article
IDH1 and IDH2 hotspot mutations are not found in canine glioma
International Journal of Cancer, 127(1), 245–246.
Contributors: Z. Reitman *, N. Olby n , C. Mariani n , n, M. Breen n , D. Bigner *, R. McLendon *, H. Yan *
2009 journal article
Influence of genetic background on tumor karyotypes: Evidence for breed-associated cytogenetic aberrations in canine appendicular osteosarcoma
CHROMOSOME RESEARCH, 17(3), 365–377.
Contributors: H. Wang n, P. Tsai n, C. Langford*, S. Fosmire*, C. Jubala*, D. Getzy*, G. Cutter *, J. Modiano *, M. Breen n n,
2009 journal article
Microarray-based cytogenetic profiling reveals recurrent and subtype-associated genomic copy number aberrations in feline sarcomas
CHROMOSOME RESEARCH, 17(8), 987–1000.
Contributors: V. Valli*, P. Ellis *, J. Bell*, E. Karlsson *, J. Cullen n, K. Lindblad-Toh *, C. Langford*, M. Breen n n,
2009 journal article
ORIGINS AND EVOLUTION OF A TRANSMISSIBLE CANCER
EVOLUTION, 63(9), 2340–2349.
Contributors: C. Rebbeck *, n, M. Breen n , A. Leroi * & A. Burt *
2009 journal article
‘Putting our heads together’: insights into genomic conservation between human and canine intracranial tumors
Journal of Neuro-Oncology, 94(3), 333–349.
Contributors: S. Duke n, H. Wang n, T. Breen n, R. Higgins *, K. Linder n, P. Ellis *, C. Langford* n,
2008 journal article
A genome assembly-integrated dog 1 Mb BAC microarray: a cytogenetic resource for canine cancer studies and comparative genomic analysis
CYTOGENETIC AND GENOME RESEARCH, 122(2), 110–121.
Contributors: E. Karlsson *, A. Evans *, P. Ellis *, K. Lindblad-Toh *, C. Langford*, M. Breen* *, S. Duke,
2008 journal article
Generation and characterization of novel canine malignant mast cell line CL1
VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY, 127(1-2), 114–124.
Contributors: T. Lin *, n, P. Tsai n, M. Breen n & C. London *
2007 article
A cytogenetically characterized, genome-anchored 10-Mb BAC set and CGH array for the domestic dog
JOURNAL OF HEREDITY, Vol. 98, pp. 474–484.
Contributors: S. Duke n, S. Bloom n, T. Breen n, A. Young n, E. Feiste n, E. Seiser n, P. Tsai n n,
2007 journal article
A novel canine lymphoma cell line: A translational and comparative model for lymphoma research
LEUKEMIA RESEARCH, 31(12), 1709–1720.
Contributors: W. Kisseberth *, M. Nadella*, M. Breen n , n, S. Duke n, S. Murahari*, C. Kosarek*, W. Vernau*
2007 journal article
Inactivation of the p16 cyclin-dependent kinase inhibitor in high-grade canine non-Hodgkin's T-Cell lymphoma
VETERINARY PATHOLOGY, 44(4), 467–478.
Contributors: S. Fosmire*, n, C. Jubala*, J. Wojcieszyn, V. Valli*, D. Getzy*, T. Smith *, L. Gardner*
2005 journal article
Construction of a 2-Mb resolution BAC microarray for CGH analysis of canine tumors
GENOME RESEARCH, 15(12), 1831–1837.
Contributors: A. Scott n, C. Langford*, S. Fosmire*, C. Jubala*, T. Lorentzen *, C. Hitte *, E. Karlsson n,
2005 journal article
Distinct B-cell and T-cell lymphoproliferative disease prevalence among dog breeds indicates heritable risk
CANCER RESEARCH, 65(13), 5654–5661.
Contributors: J. Modiano *, M. Breen n , R. Burnett*, H. Parker *, S. Inusah*, n, P. Avery*, K. Lindblad-Toh *
2005 journal article
Genome sequence, comparative analysis and haplotype structure of the domestic dog
Nature, 438(7069), 803–819.
Contributors: K. Lindblad-Toh *, C. Wade *, T. Mikkelsen *, E. Karlsson *, D. Jaffe *, M. Kamal*, M. Clamp *, J. Chang*
2005 journal article
Junctional epidermolysis bullosa in two domestic shorthair kittens
VETERINARY DERMATOLOGY, 16(1), 69–73.
Contributors: Z. Alhaidari, T. Olivry n , A. Spadafora*, *, C. Perrin *, G. Meneguzzi *, J. Ortonne*
2005 journal article
Mutations of phosphatase and tensin homolog deleted from chromosome 10 in canine hemangiosarcoma
VETERINARY PATHOLOGY, 42(5), 618–632.
Contributors: E. Dickerson *, n, S. Fosmire*, A. Lamerato-Kozicki*, S. Bianco*, J. Wojcieszyn, M. Breen n , S. Helfand *, J. Modiano *
2004 journal article
A high-resolution comparative map of canine Chromosome 5q14.3-q33 constructed utilizing the 1.5x canine genomesequence
Mammalian Genome, 15(7), 544–551.
2004 journal article
An integrated 4249 marker FISH/RH map of the canine genome
BMC GENOMICS, 5.
Contributors: M. Breen n , C. Hitte *, T. Lorentzen *, n, E. Cadieu*, L. Sabacan*, A. Scott n, G. Evanno*
journal article
Exome sequencing of lymphomas from three dog breeds reveals somatic mutation patterns reflecting genetic background
Elvers, I., Turner-Maier, J., Swofford, R., Koltookian, M., Johnson, J., Stewart, C., … Lindblad-Toh, K. Genome Research, 25(11), 1634–1645.
journal article
Genome-wide analyses implicate 33 loci in heritable dog osteosarcoma, including regulatory variants near CDKN2A/B
Karlsson, E. K., Sigurdsson, S., Ivansson, E., Thomas, R., Elvers, I., Wright, J., … Rivera, P. Genome Biology, 14(12).
journal article
Genome-wide association study identifies shared risk loci common to two malignancies in golden retrievers
Tonomura, N., Elvers, I., Thomas, R., Megquier, K., Turner-Maier, J., Howald, C., … Kim, J. H. PLoS Genetics, 11(2).
journal article
SETD2 is recurrently mutated in whole-exome sequenced canine osteosarcoma
Sakthikumar, S., Elvers, I., Kim, J., Arendt, M. L., Thomas, R., Turner-Maier, J., … Modiano, J. F. Cancer Research, 78(13), 3421–3431.
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