Reid Longley

Kelliher, J. M., Johnson, L. Y. D., Rodriguez, F. E., Saunders, J. K., Kroeger, M. E., Hanson, B., … Eloe-Fadrosh, E. A. (2025, April 9). A cost and community perspective on the barriers to microbiome data reuse. Frontiers in Bioinformatics. https://doi.org/10.3389/fbinf.2025.1585717

Kelliher, J. M., Johnson, L. Y. D., Robinson, A. J., Palmieri, I., Hanson, B. T., Longley, R., … Junier, P. (2025, January 24). Investigating Bacterial-Fungal Interactions using Fungal Highway Columns in Diverse Environments and Substrates. Journal of Visualized Experiments. https://doi.org/10.3791/66989

Bonito, G., Miyauchi, S., Hayes, R. D., Tan, H., Kuo, A., Robinson, A., … Martin, F. M. (2025, August 5). Pangeneric analyses reveal the divergent genome evolution and ecologies between morels and truffles in the Morchellaceae. Current Biology, Vol. 35. https://doi.org/10.1016/j.cub.2025.07.037

Kelliher, J. M., Rodriguez, F. E., Johnson, L. Y. D., Roux, S., Smith, M., Clum, A., … Eloe-Fadrosh, E. A. (2025, March 22). Quantifying the impact of workshops promoting microbiome data standards and data stewardship. Scientific Reports. https://doi.org/10.1038/s41598-025-89991-1

Feeser, K., Longley, R., Gallegos-Graves, L. V., Albright, M., & Shakya, M. (2025, October 16). Recovering new viruses from New Mexico soils (S. Roux, Ed.). Microbiology Resource Announcements. https://doi.org/10.1128/mra.00908-25

Longley, R., Robinson, A. J., Asher, O. A., Middlebrook, E., Bonito, G., & Chain, P. S. G. (2024, November 18). Erratum for Longley et al., “Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes.” MSphere. https://doi.org/10.1128/msphere.00881-24

Kelliher, J. M., Johnson, L. Y. D., Robinson, A. J., Longley, R., Hanson, B. T., Cailleau, G., … Chain, P. S. G. (2024, August 7). Fabricated devices for performing bacterial-fungal interaction experiments across scales. Frontiers in Microbiology. https://doi.org/10.3389/fmicb.2024.1380199

Longley, R., Robinson, A. J., Asher, O. A., Middlebrook, E., Bonito, G., & Chain, P. S. G. (2024, August 27). Signatures of Mollicutes-related endobacteria in publicly available Mucoromycota genomes (G. Butler, Ed.). MSphere. https://doi.org/10.1128/msphere.00309-24

Robinson, A., Babinski, M., Xu, Y., Kelliher, J., Longley, R., & Chain, P. (2023, April 10). A centralized resource for bacterial–fungal interactions research. Fungal Biology. https://doi.org/10.1016/j.funbio.2023.04.002

Longley, R., Robinson, A., Liber, J. A., Bryson, A. E., Morales, D. P., LaButti, K., … Bonito, G. (2023, September 18). Comparative genomics of Mollicutes-related endobacteria supports a late invasion into Mucoromycota fungi. Communications Biology. https://doi.org/10.1038/s42003-023-05299-8

Longley, R., Benucci, G. M. N., Pochon, X., Bonito, G., & Bonito, V. (2023, October 12). Species-specific coral microbiome assemblages support host bleaching resistance during an extreme marine heatwave. The Science of The Total Environment. https://doi.org/10.1016/j.scitotenv.2023.167803

Kelliher, J. M., Robinson, A. J., Longley, R., Johnson, L. Y. D., Hanson, B. T., Morales, D. P., … Chain, P. S. G. (2023, August 26). The endohyphal microbiome: current progress and challenges for scaling down integrative multi-omic microbiome research. Microbiome, Vol. 11. https://doi.org/10.1186/s40168-023-01634-7

Sultaire, S. M., Benucci, G. M. N., Longley, R., Kroll, A. J., Verschuyl, J., Bonito, G., & Roloff, G. J. (2023, October 2). Using high-throughput sequencing to investigate summer truffle consumption by chipmunks in relation to retention forestry. Forest Ecology and Management. https://doi.org/10.1016/j.foreco.2023.121460

Liber, J. A., Minier, D. H., Stouffer-Hopkins, A., Wyk, J. V., Longley, R., & Bonito, G. (2022, January 27). Maple and hickory leaf litter fungal communities reflect pre-senescent leaf communities. PeerJ, Vol. 10, p. e12701. https://doi.org/10.7717/peerj.12701

Noel, Z. A., Longley, R., Benucci, G. M. N., Trail, F., Chilvers, M. I., & Bonito, G. (2022, February 23). Non-target impacts of fungicide disturbance on phyllosphere yeasts in conventional and no-till management. ISME Communications, Vol. 2. https://doi.org/10.1038/s43705-022-00103-w

Szymanski, S., Longley, R., Hatlen, R. J., Heger, L., Sharma, N., Bonito, G., & Miles, T. D. (2022, November 15). The Blueberry Fruit Mycobiome Varies by Tissue Type and Fungicide Treatment. Phytobiomes Journal, Vol. 2. https://doi.org/10.1094/pbiomes-04-22-0028-fi

Chen, K.-H., Longley, R., Bonito, G., & Liao, H.-L. (2021, June 23). A Two-Step PCR Protocol Enabling Flexible Primer Choice and High Sequencing Yield for Illumina MiSeq Meta-Barcoding. Agronomy, Vol. 11, p. 1274. https://doi.org/10.3390/agronomy11071274

Miller, S. R., Longley, R., Hutchins, P. R., & Bauersachs, T. (2020, January 1). Cellular Innovation of the Cyanobacterial Heterocyst by the Adaptive Loss of Plasticity. Current Biology, Vol. 30, pp. 344–350.e4. https://doi.org/10.1016/j.cub.2019.11.056

Longley, R., Noel, Z. A., Benucci, G. M. N., Chilvers, M. I., Trail, F., & Bonito, G. (2020, June 3). Crop Management Impacts the Soybean (Glycine max) Microbiome. Frontiers in Microbiology, Vol. 11. https://doi.org/10.3389/fmicb.2020.01116

Longley, R., Benucci, G. M. N., Mills, G., & Bonito, G. (2019, September 1). Fungal and bacterial community dynamics in substrates during the cultivation of morels (<i>Morchella rufobrunnea</i>) indoors. FEMS Microbiology Letters, Vol. 366. https://doi.org/10.1093/femsle/fnz215

McCoy, A. G., Roth, M. G., Shay, R., Noel, Z. A., Jayawardana, M. A., Longley, R. W., … Chilvers, M. I. (2019, January 1). Identification of Fungal Communities Within the Tar Spot Complex of Corn in Michigan via Next-Generation Sequencing. Phytobiomes Journal, Vol. 3, pp. 235–243. https://doi.org/10.1094/pbiomes-03-19-0017-r

Benucci, G. M. N., Longley, R., Zhang, P., Zhao, Q., Bonito, G., & Yu, F. (2019, September 26). Microbial communities associated with the black morel <i>Morchella sextelata</i> cultivated in greenhouses. PeerJ, Vol. 7, p. e7744. https://doi.org/10.7717/peerj.7744