Works (8)

Updated: July 5th, 2023 15:46

2016 journal article

Composition of Rosenthal Fibers, the Protein Aggregate Hallmark of Alexander Disease

JOURNAL OF PROTEOME RESEARCH, 15(7), 2265–2282.

By: M. Heaven, D. Flint, S. Randall n, A. Sosunov, L. Wilson, S. Barnes, J. Goldman, D. Muddiman n , M. Brenner

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: Rosenthal fiber; Alexander disease; protein aggregates; neurodegenerative disease; astrocyte; proteomics; mass spectrometry (MS); stress granules
MeSH headings : Alexander Disease; Animals; Astrocytes; Cyclin D2 / analysis; DEAD-box RNA Helicases / analysis; GTP-Binding Proteins / analysis; Humans; Immunohistochemistry; Mice; Neoplasm Proteins / analysis; Neuropeptides / analysis; Protein Aggregates; Protein Aggregation, Pathological; Proteome / analysis; RNA Helicases / analysis; Receptors for Activated C Kinase; Receptors, Cell Surface / analysis
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 journal article

Identification of Epigenetic Factor Proteins Expressed in Human Embryonic Stem Cell-Derived Trophoblasts and in Human Placental Trophoblasts

JOURNAL OF PROTEOME RESEARCH, 15(8), 2433–2444.

By: P. Sarkar n, A. Mischler n, S. Randall n, T. Collier n, K. Dorman*, K. Boggess*, D. Muddiman n , B. Rao n

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: quantitative mass spectrometry; SILAC; human embryonic stem cell; trophoblast; epigenetic factor
MeSH headings : Cell Differentiation; DNA (Cytosine-5-)-Methyltransferases / genetics; Epigenomics; Female; Gene Expression / genetics; Human Embryonic Stem Cells / cytology; Humans; Placenta / chemistry; Placenta / cytology; Pregnancy; Transcription Factors / genetics; Trophoblasts / chemistry; Trophoblasts / cytology
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Accurate Identification of Deamidated Peptides in Global Proteomics Using a Quadrupole Orbitrap Mass Spectrometer

JOURNAL OF PROTEOME RESEARCH, 13(2), 777–785.

By: A. Nepomuceno n, R. Gibson n, S. Randall n & D. Muddiman n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: deamidation; post-translational modification; quadrupole orbitrap mass spectrometry
MeSH headings : Amides / chemistry; Chromatography, Liquid; Peptides / chemistry; Proteomics; Tandem Mass Spectrometry / instrumentation
Sources: Web Of Science, ORCID
Added: August 6, 2018

2014 journal article

Evaluating nonpolar surface area and liquid chromatography/mass spectrometry response: an application for site occupancy measurements for enzyme intermediates in polyketide biosynthesis

Rapid Communications in Mass Spectrometry, 28(23), 2511–2522.

By: S. Randall n, I. Koryakina n, G. Williams n  & D. Muddiman n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
MeSH headings : Acyltransferases / metabolism; Chromatography, Liquid / methods; Filtration; Hydrophobic and Hydrophilic Interactions; Mass Spectrometry / methods; Oligopeptides / chemistry; Oligopeptides / metabolism; Peptide Fragments / chemistry; Peptide Fragments / metabolism; Polyketides / chemistry; Polyketides / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2013 journal article

Factorial Experimental Designs Elucidate Significant Variables Affecting Data Acquisition on a Quadrupole Orbitrap Mass Spectrometer

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 24(10), 1501–1512.

By: S. Randall n, H. Cardasis* & D. Muddiman n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: Design of experiments; Data dependent acquisition; Proteome coverage; Q Exactive; FTMS
MeSH headings : Models, Chemical; Proteome / analysis; Proteome / chemistry; Proteomics / methods; Research Design; Saccharomyces cerevisiae Proteins / analysis; Saccharomyces cerevisiae Proteins / chemistry; Tandem Mass Spectrometry / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

Targeted Proteomics of the Secretory Pathway Reveals the Secretome of Mouse Embryonic Fibroblasts and Human Embryonic Stem Cells

MOLECULAR & CELLULAR PROTEOMICS, 11(12), 1829–1839.

By: P. Sarkar n, S. Randall n, D. Muddiman n  & B. Rao n

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
MeSH headings : Animals; Cell Differentiation; Cells, Cultured; Culture Media, Conditioned / analysis; Embryonic Stem Cells / cytology; Embryonic Stem Cells / metabolism; Fibroblasts / cytology; Fibroblasts / metabolism; Humans; Mice; Proteins / analysis; Secretory Pathway; Subcellular Fractions / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018

2012 journal article

The subcellular proteome of undifferentiated human embryonic stem cells

PROTEOMICS, 12(3), 421–430.

By: P. Sarkar n, T. Collier n, S. Randall n, D. Muddiman n  & B. Rao n

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
author keywords: Cell biology; Extracellular proteins; Human embryonic stem cells; Subcellular fractionation; Subcellular proteomics
MeSH headings : Animals; Cell Differentiation; Cells, Cultured; Culture Media, Conditioned; Cytosol / metabolism; Embryonic Stem Cells / cytology; Embryonic Stem Cells / metabolism; Endoplasmic Reticulum / genetics; Endoplasmic Reticulum / metabolism; Gene Expression Regulation, Developmental; Golgi Apparatus / genetics; Golgi Apparatus / metabolism; Humans; Membrane Proteins / genetics; Membrane Proteins / metabolism; Mice; Nuclear Proteins / genetics; Nuclear Proteins / metabolism; Signal Transduction / genetics; Subcellular Fractions / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 25(17), 2524–2532.

By: T. Collier n, S. Randall n, P. Sarkar n, B. Rao n, R. Dean n  & D. Muddiman n 

co-author countries: United States of America πŸ‡ΊπŸ‡Έ
MeSH headings : Amino Acid Sequence; Amino Acids / chemistry; Amino Acids / metabolism; Animals; Cell Differentiation; Cell Line; Ectoderm; Embryonic Stem Cells / cytology; Embryonic Stem Cells / metabolism; Humans; Isotope Labeling / methods; Mass Spectrometry; Mice; Molecular Sequence Data; Peptide Fragments; Peptide Mapping; Proteins / analysis; Proteins / chemistry; Proteins / metabolism; Proteomics / methods; Sensitivity and Specificity; Tandem Mass Spectrometry; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

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