Works (27)
Updated: July 5th, 2023 15:59
2014 journal article
In Vivo Mapping of Arabidopsis Scaffold/Matrix Attachment Regions Reveals Link to Nucleosome-Disfavoring Poly(dA:dT) Tracts
PLANT CELL, 26(1), 102–120.
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Arabidopsis Proteins / physiology; Chromatin / metabolism; Gene Expression Regulation, Plant; Matrix Attachment Regions; Nucleosomes / metabolism; Nucleotide Motifs; Poly dA-dT / metabolism; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription Factors / physiology
TL;DR:
This work uses tiling microarrays to map S/MARs on Arabidopsis chromosome 4, found to be spaced more closely than in the large plant and animal genomes studied to date and preferentially enriched in poly(dA:dT) tracts, sequences that resist nucleosome formation.
(via Semantic Scholar)
www.plantcell.org (publisher PDF)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Quantitative trait locus analysis of tolerance to temperature fluctuations in winter, fruit characteristics, flower color, and prickle-free canes in raspberry
MOLECULAR BREEDING, 33(2), 267–280.
author keywords: Chilling requirement; Rest completion; Gene s; Spinelessness
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution
NATURE GENETICS, 45(5), 487–U47.
MeSH headings : Agriculture; Biological Evolution; Chromosome Mapping; Chromosomes, Plant / genetics; Genetic Variation; Genome, Plant / genetics; Molecular Sequence Data; Polymers / metabolism; Propanols / metabolism; Prunus / classification; Prunus / genetics
TL;DR:
Comparisons showed that peach has not undergone recent whole-genome duplication, and even though the ancestral triplicated blocks in peach are fragmentary compared to those in grape, all seven paleosets of paralogs from the putative paleoancestor are detectable.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2012 journal article
Development and Evaluation of a 9K SNP Array for Peach by Internationally Coordinated SNP Detection and Validation in Breeding Germplasm
PLOS ONE, 7(4).
MeSH headings : Breeding; Chromosome Mapping; Chromosomes, Plant; Gene Frequency; Genetic Markers; High-Throughput Nucleotide Sequencing; International Cooperation; Oligonucleotide Array Sequence Analysis; Polymorphism, Single Nucleotide; Prunus / genetics; Sequence Analysis, DNA
TL;DR:
The almost 7,000 SNPs verified as polymorphic through extensive empirical evaluation represent an excellent source of markers for future studies in genetic relatedness, genetic mapping, and dissecting the genetic architecture of complex agricultural traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2012 review
The peach genome
[Review of ]. Tree Genetics & Genomes, 8(3), 531–547.
Source: NC State University Libraries
Added: August 6, 2018
2012 journal article
Whole genome comparisons of Fragaria, Prunus and Malus reveal different modes of evolution between Rosaceous subfamilies
BMC Genomics, 13.
MeSH headings : Algorithms; Chromosomes, Plant / genetics; Conserved Sequence / genetics; Evolution, Molecular; Fragaria / genetics; Genome, Plant / genetics; Genomics; Malus / genetics; Phylogeny; Prunus / genetics; Rosacea / genetics; Sequence Homology, Nucleic Acid
TL;DR:
The analysis shows that different modes of evolution may have played major roles in different subfamilies of Rosaceae, and reconstructs a hypothetical ancestral genome for the Rosaceae 7 composed of nine chromosomes and proposes the evolutionary steps from the ancestral genome to the extant Fragaria, Prunus and Malus genomes.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Source: NC State University Libraries
Added: August 6, 2018
2011 journal article
A protocol to assess heat tolerance in a segregating population of raspberry using chlorophyll fluorescence
SCIENTIA HORTICULTURAE, 130(3), 524–530.
author keywords: Breeding; Rubus idaeus; Rubus parvifolius; Critical temperature; Dark adaptation test; Heat shock; Heat screen
TL;DR:
The distribution of heat tolerance within the population was essentially normal, and thus quantitative trait analysis is a plausible approach for studying heat tolerance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
Identification of quantitative trait loci for dry-matter, starch, and beta-carotene content in sweetpotato
MOLECULAR BREEDING, 28(2), 201–216.
author keywords: Ipomoea batatas; Sweetpotato; Sweetpotato breeding; QTL; Molecular marker; Molecular mapping; Polyploid mapping; Marker-assisted breeding; Vitamin A
TL;DR:
This work identifies quantitative trait loci (QTL) for dry-matter, starch, and β-carotene content in a hexaploid sweetpotato mapping population derived from a cross between Tanzania and Beauregard, an orange-fleshed, low dry- Mattersweetpotato cultivar popular in the USA.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
Linkage Mapping and QTL Analysis of Agronomic Traits in Tetraploid Potato (Solanum tuberosum subsp tuberosum)
CROP SCIENCE, 51(2), 771–785.
TL;DR:
A linkage map using amplified fragment length polymorphism and simple sequence repeat markers is developed, and quantitative trait loci (QTL) are searched for via interval mapping and single-marker analysis of variance.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
On the Identity of the Weedy Bittercresses (Cardamine: Brassicaceae) in United States Nurseries: Evidence from Molecules and Morphology
WEED SCIENCE, 59(1), 123–135.
author keywords: Cardamine; bittercress; CIP7; ITS; molecular genetics; taxonomy; key
TL;DR:
To aid nurserymen and botanists in identification of these four closely related bittercress species, a key was developed and is accompanied by detailed descriptions and illustrations.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
QTL mapping of internal heat necrosis in tetraploid potato
THEORETICAL AND APPLIED GENETICS, 122(1), 129–142.
author keywords: QTL; Internal heat necrosis; Linkage mapping; Potato; Tetraploid; Solanum tuberosum
MeSH headings : Agriculture; Chromosome Mapping / methods; Genetic Linkage; Genetic Markers; Hot Temperature; Necrosis; Plant Diseases / genetics; Quantitative Trait Loci / genetics; Quantitative Trait, Heritable; Solanum tuberosum / genetics; Tetraploidy
TL;DR:
A linkage map of tetraploid potato using AFLP and SSR markers is developed, and QTL for mean severity and percent incidence of internal heat necrosis is mapped, representing the first molecular genetic research of IHN in potato.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
14. Life Below Water
(OpenAlex)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
Starch Self-Processing in Transgenic Sweet Potato Roots Expressing a Hyperthermophilic alpha-Amylase
BIOTECHNOLOGY PROGRESS, 27(2), 351–359.
author keywords: hyperthermophilic enzymes; starch conversion; transgenic plants; sweet potato; biofuels
MeSH headings : Crops, Agricultural / genetics; Hot Temperature; Ipomoea batatas / genetics; Ipomoea batatas / metabolism; Plant Roots / metabolism; Plants, Genetically Modified / enzymology; Plants, Genetically Modified / metabolism; Southeastern United States; Starch / metabolism; Thermotoga maritima / enzymology; alpha-Amylases / genetics; alpha-Amylases / physiology
TL;DR:
The results presented here demonstrate that engineering plants with hyperthermophilic glycoside hydrolases can facilitate cost effective starch conversion to fermentable sugars and the use of sweet potato as an alternative near‐term energy crop should be considered.
(via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2010 journal article
Arabidopsis thaliana Chromosome 4 Replicates in Two Phases That Correlate with Chromatin State
PLoS Genetics, 6(6), e1000982.
Ed(s): G. Copenhaver
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Chromatin / genetics; Chromosomes, Plant; DNA Replication; Epigenesis, Genetic; Flow Cytometry; Oligonucleotide Array Sequence Analysis; Replicon; S Phase
TL;DR:
The similarity of the replication profiles for early and mid S phase cells indicates that replication origin activation in euchromatin is stochastic, and distinct patterns of association of H3K56ac with gene expression and early replication provide evidence that H3k56ac may be associated with initiation zones and replication origins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
15. Life on Land
(OpenAlex)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2009 journal article
New Zealand Bittercress (Cardamine corymbosa; Brassicaceae): New to the United States
WEED TECHNOLOGY, 23(4), 604–607.
author keywords: Bittercress; Cardamine; new species; weed
TL;DR:
It is confirmed that New Zealand bittercress also occurs in a nursery in Clackamas County, Oregon, and has likely been distributed throughout the United States as a contaminant in container grown ornamental plants.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
14. Life Below Water
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Plant cell calcium-rich environment enhances thermostability of recombinantly produced α-amylase from the hyperthermophilic bacterium Thermotoga maritime
Biotechnology and Bioengineering, 104(5), 947–956.
author keywords: hyperthermophilic enzymes; starch processing; transgenic plants; tobacco NT1 Cell cultures; biofuel
MeSH headings : Calcium / pharmacology; Coenzymes / pharmacology; Enzyme Stability; Escherichia coli / enzymology; Escherichia coli / genetics; Hot Temperature; Plants, Genetically Modified / enzymology; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Recombinant Proteins / metabolism; Thermotoga maritima / enzymology; Thermotoga maritima / genetics; Tobacco / enzymology; Tobacco / genetics; alpha-Amylases / chemistry; alpha-Amylases / genetics; alpha-Amylases / metabolism
TL;DR:
In a proof of concept study, tobacco cell cultures were used as model system to test in planta production of a hyperthermophilic α‐amylase from Thermotoga maritima, demonstrating the importance of a calcium‐rich environment for thermostability, as well as the advantage of producing this enzyme directly in plant cells where calcium is readily available.
(via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2009 journal article
Rapid shoot regeneration in industrial 'high starch' sweetpotato (Ipomoea batatas L.) genotypes
PLANT CELL TISSUE AND ORGAN CULTURE, 97(1), 109–117.
author keywords: Meristem culture; High dry matter; Organogenesis; Storage roots; Sweet potato; Virus indexing
TL;DR:
The results led to the establishment of optimized in vitro regeneration procedures for the novel high-starch sweetpotato (SP) genotypes ‘DM01-158’, ‘FTA94’ , ‘FT489’ and ‘PDM P4’ that are rapid and reliable.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Synteny of Prunus and other model plant species
BMC GENOMICS, 10.
MeSH headings : Arabidopsis / genetics; Chromosomes, Artificial, Bacterial; Conserved Sequence; DNA, Plant / genetics; Evolution, Molecular; Genes, Plant; Genome, Plant; Medicago / genetics; Populus / genetics; Prunus / genetics; Quantitative Trait Loci; Sequence Analysis, DNA; Synteny
TL;DR:
A more complex network of synteny between Prunus-Arabidopsis is observed, indicative of multiple genome duplication and subsequence gene loss in Arabidopsis, and shows the striking microsynteny between thePrunus BACs and the genome of Populus and Medicago.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
A framework physical map for peach, a model Rosaceae species
TREE GENETICS & GENOMES, 4(4), 745–756.
author keywords: Prunus persica; HICF fingerprinting; BAC-based physical/genetic map
TL;DR:
A genome-wide framework physical map of peach was constructed using high-information content fingerprinting (HICF) and FPC software and 2,636 markers were incorporated into the physical framework and supported the accuracy of contig assembly.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Detection of quantitative trait loci and inheritance of root-knot nematode resistance in sweetpotato
Journal of the American Society for Horticultural Science, 133(6), 844–851.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Development of a genetic linkage map and identification of homologous linkage groups in sweetpotato using multiple-dose AFLP markers
MOLECULAR BREEDING, 21(4), 511–532.
author keywords: ipomoea batatas; molecular marker; molecular mapping; polyploid mapping; autopolyploid
TL;DR:
The research supports the hypothesis that sweetpotato is an autopolyploid and suggests that some preferential pairing occurs insweetpotato.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2008 review
Epigenomic consequences of immortalized plant cell suspension culture
[Review of ]. PLoS Biology, 6(12), 2880–2895.
Source: NC State University Libraries
Added: August 6, 2018
2008 review
Multiple models for Rosaceae genomics
[Review of ]. Plant Physiology, 147(3), 985–1003.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 105(39), 14802–14807.
Contributors: C. Opperman n, D. Bird n , V. Williamson *, D. Rokhsar *, M. Burke n, J. Cohn n, J. Cromer n, S. Diener n
author keywords: compaction; dauer; development; horizontal gene transfer; gene
MeSH headings : Animals; Base Sequence; Caenorhabditis elegans / genetics; Chromosome Mapping; Evolution, Molecular; Gene Duplication; Gene Transfer, Horizontal; Genome, Helminth; Host-Parasite Interactions / genetics; Molecular Sequence Data; Multigene Family; Operon; Phylogeny; Plants / parasitology; Synteny; Tylenchoidea / genetics
TL;DR:
Meloidogyne hapla is established as a tractable model plant-parasitic nematode amenable to forward and reverse genetics, and a complete genome sequence is presented that defines a platform to elucidate mechanisms of parasitism by what is the largest uncontrolled group of plant pathogens worldwide.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID
Added: August 6, 2018
2005 journal article
Candidate gene database and transcript map for peach, a model species for fruit trees
THEORETICAL AND APPLIED GENETICS, 110(8), 1419–1428.
MeSH headings : Breeding / methods; Chromosome Mapping; Chromosomes, Artificial, Bacterial; Databases, Genetic; Expressed Sequence Tags; Gene Library; Genome, Plant; Plasmids / genetics; Prunus / genetics; Sequence Analysis, DNA
TL;DR:
To develop an extensive Prunus expressed sequence tag (EST) database for identifying and cloning the genes important to fruit and tree development, 9,984 high-quality ESTs from a peach cDNA library of developing fruit mesocarp were generated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
The effect of replicate number and image analysis method on sweetpotato [Ipomoea batatas (L.) Lam.] cDNA microarray results
Plant Molecular Biology Reporter, 23(4), 367–381.
Source: NC State University Libraries
Added: August 6, 2018
2002 conference paper
Grower-participatory sweetpotato breeding efforts in North Carolina
Proceedings of the first international conference on sweetpotato food and health: Lima, Peru 26-29 July, 2001, 583(583), 69–76.
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2002 article
Sweetpotato Genomics at North Carolina State University
PROCEEDINGS OF THE FIRST INTERNATIONAL CONFERENCE ON SWEETPOTATO: FOOD AND HEALTH FOR THE FUTURE, Vol. 8, pp. 51–60.
author keywords: Ipomoea batatas; molecular markers; sequencing; DNA library; database; gene expression
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
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