Thomas K. Mitchell

Works (28)

Updated: July 5th, 2023 16:00

2020 article

Genome Resources for Seven Fungal Isolates That Cause Dollar Spot Disease in Turfgrass, Including Clarireedia jacksonii and C. monteithiana

Crouch, J. A., Beirn, L. A., Boehm, M. J., Carbone, I., Clarke, B. B., Kerns, J. P., … Tredway, L. P. (2020, July 21). Plant Disease, Vol. 105, pp. 691–694.

By: J. Crouch *, L. Beirn*, M. Boehm *, I. Carbone n , B. Clarke*, J. Kerns n , M. Malapi-Wight *, T. Mitchell*, R. Venu*, L. Tredway n

author keywords: Agrostis stolonifera; Cynodon dactylon; dollar spot; Festuca rubra; fungi; Paspalum vaginatum; pathogen diversity; Rutstroemiaceae; Sclerotinia homoeocarpa; turf; turfgrass
MeSH headings : Agrostis; Ascomycota / genetics; Host-Pathogen Interactions; Poaceae
topics (OpenAlex): Turfgrass Adaptation and Management; Plant Pathogens and Fungal Diseases; Plant Disease Resistance and Genetics
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: July 6, 2021

2011 article

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

Nunes, C. C., Gowda, M., Sailsbery, J., Xue, M., Chen, F., Brown, D. E., … Dean, R. A. (2011, June 2). BMC Genomics, Vol. 12.

By: C. Nunes n, M. Gowda  n, J. Sailsbery n, M. Xue  n, F. Chen *, D. Brown n, Y. Oh n, T. Mitchell*, R. Dean n 

MeSH headings : Base Sequence; DNA, Intergenic / genetics; Gene Expression Profiling; Hyphae / genetics; Magnaporthe / genetics; Magnaporthe / physiology; Molecular Sequence Data; Plants / microbiology; RNA, Fungal / genetics; RNA, Small Untranslated / genetics; RNA, Transfer / genetics; Repetitive Sequences, Nucleic Acid / genetics; Sequence Analysis, RNA
topics (OpenAlex): Plant Disease Resistance and Genetics; Plant and Fungal Interactions Research; Plant-Microbe Interactions and Immunity
TL;DR: The authors' findings suggest M. oryzae small RNAs differentially accumulate in vegetative and specialized-infection tissues and may play an active role in genome integrity and regulating growth and development. (via Semantic Scholar)
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Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

2009 article

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae

Meng, S., Brown, D. E., Ebbole, D. J., Torto-Alalibo, T., Oh, Y. Y., Deng, J., … Dean, R. A. (2009, February 1). BMC Microbiology, Vol. 9.

By: S. Meng n, D. Brown n, D. Ebbole *, T. Torto-Alalibo*, Y. Oh n, J. Deng n, T. Mitchell n, R. Dean n 

MeSH headings : Computational Biology; Databases, Protein; Fungal Proteins / genetics; Genome, Fungal; Magnaporthe / genetics; Oryza / microbiology; Sequence Alignment; Sequence Analysis, Protein; Terminology as Topic; Vocabulary, Controlled
topics (OpenAlex): Fungal and yeast genetics research; Plant Pathogens and Fungal Diseases; Microbial Natural Products and Biosynthesis
TL;DR: This analysis provides comprehensive and robust GO annotations of the M. oryzae genome assemblies that will be solid foundations for further functional interrogation of M.oryzae. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2008 article

Anastomosis Is Required for Virulence of the Fungal NecrotrophAlternaria brassicicola

Craven, K. D., Vélëz Heriberto, Cho, Y., Lawrence, C. B., & Mitchell, T. K. (2008, March 1). Eukaryotic Cell.

By: K. Craven n, H. Vélëz  n, Y. Cho*, C. Lawrence* & T. Mitchell n

MeSH headings : Alternaria / cytology; Alternaria / genetics; Alternaria / metabolism; Alternaria / pathogenicity; Base Sequence; Brassica / microbiology; Fungal Proteins / genetics; Fungal Proteins / metabolism; Genetic Complementation Test; Hyphae / metabolism; Molecular Sequence Data; Plant Diseases / microbiology; Virulence
topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Plant Disease Resistance and Genetics
TL;DR: Targeted gene deletion and nitrate utilization mutants of the cruciferous pathogen Alternaria brassicicola and two closely related species are used to investigate hyphal fusion (anastomosis) and its role in the ability of fungi to cause disease. (via Semantic Scholar)
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6. Clean Water and Sanitation (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2008 article

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae

Oh, Y., Donofrio, N., Pan, H., Coughlan, S., Brown, D. E., Meng, S., … Dean, R. A. (2008, May 20). Genome Biology, Vol. 9.

By: Y. Oh n, N. Donofrio n, H. Pan n, S. Coughlan*, D. Brown n, S. Meng n, T. Mitchell n, R. Dean n 

MeSH headings : Cell Wall / chemistry; Cell Wall / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Lipid Metabolism; Magnaporthe / cytology; Magnaporthe / genetics; Magnaporthe / physiology; Signal Transduction; Spores, Fungal / cytology; Spores, Fungal / genetics
topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Microbial Natural Products and Biosynthesis
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 article

A systematic analysis of T-DNA insertion events in Magnaporthe oryzae

Meng, Y., Patel, G., Heist, M., Betts, M. F., Tucker, S. L., Galadima, N., … Farman, M. L. (2007, April 17). Fungal Genetics and Biology, Vol. 44, pp. 1050–1064.

By: Y. Meng *, G. Patel *, M. Heist*, M. Betts *, S. Tucker*, N. Galadima*, N. Donofrio n, D. Brown n ...

author keywords: agrobacterium-mediated transformation; insertional mutagenesis; inverse PCR
MeSH headings : 3' Flanking Region; 5' Flanking Region; Agrobacterium tumefaciens / genetics; Chromosomes, Fungal; DNA, Bacterial / analysis; DNA, Bacterial / genetics; Genome, Fungal; Magnaporthe / genetics; Mutagenesis, Insertional; Repetitive Sequences, Nucleic Acid; Transformation, Genetic
topics (OpenAlex): Protist diversity and phylogeny; Fungal and yeast genetics research; CRISPR and Genetic Engineering
TL;DR: Analysis of random T-DNA insertions that were generated as part of a large-scale insertional mutagenesis project for Magnaporthe oryzae found that the distribution of T- DNA inserts among the M.Oryzae chromosomes was not random and significant insertion bias was detected. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 article

Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae

Betts, M. F., Tucker, S. L., Galadima, N., Meng, Y., Patel, G., Li, L., … Orbach, M. J. (2007, May 19). Fungal Genetics and Biology, Vol. 44, pp. 1035–1049.

By: M. Betts *, S. Tucker*, N. Galadima*, Y. Meng *, G. Patel *, L. Li *, N. Donofrio n, A. Floyd n ...

author keywords: Magnaporthe oryzae; Insertional mutagenesis; Agrobacterium tumefaciens-mediated transformation; CaCl2/PEG-mediated transformation; pathogenicity
MeSH headings : 3' Flanking Region; 5' Flanking Region; Agrobacterium tumefaciens / genetics; Magnaporthe / genetics; Mutagenesis, Insertional / methods; Phenotype; Protoplasts; Transformation, Genetic
topics (OpenAlex): Plant Pathogens and Fungal Diseases; Fungal Biology and Applications; Plant tissue culture and regeneration
TL;DR: A description of the high throughput transformation and analysis pipeline used to create the most comprehensive insertional mutagenesis analysis of a fungal pathogen is provided. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 article

Expressed Sequence Tags fromPhytophthora sojaeReveal Genes Specific to Development and Infection

Torto-Alalibo, T. A., Tripathy, S., Smith, B. M., Arredondo, F. D., Zhou, L., Li, H., … Tyler, B. M. (2007, June 18). Molecular Plant-Microbe Interactions, Vol. 20, pp. 781–793.

By: T. Torto-Alalibo*, S. Tripathy, B. Smith, F. Arredondo, L. Zhou, H. Li*, M. Chibucos, D. Qutob ...

author keywords: effectors
MeSH headings : Cluster Analysis; Expressed Sequence Tags; Gene Expression Profiling; Gene Library; Genes, Fungal; Molecular Sequence Data; Phytophthora / genetics; Phytophthora / growth & development; Sequence Analysis, DNA; Soybeans / microbiology
topics (OpenAlex): Plant Pathogens and Resistance; Plant-Microbe Interactions and Immunity; Genomics and Phylogenetic Studies
TL;DR: Six unique expressed sequence tag libraries were generated from four developmental stages of Phytophthora sojae and revealed genes that were specific to or highly represented in particular growth conditions and life stages, indicating that, during infection, the pathogen derives most of its carbon and energy via glycolysis of sugars in the plant. (via Semantic Scholar)
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2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2007 article

The Fus3/Kss1 MAP kinase homolog Amk1 regulates the expression of genes encoding hydrolytic enzymes in Alternaria brassicicola

Cho, Y., Cramer, R. A., Kim, K.-H., Davis, J., Mitchell, T. K., Figuli, P., … Lawrence, C. B. (2007, February 6). Fungal Genetics and Biology.

By: Y. Cho*, R. Cramer *, K. Kim *, J. Davis*, T. Mitchell n, P. Figuli*, B. Pryor *, E. Lemasters*, C. Lawrence*

author keywords: necrotroph; pathogenicity factor; mitogen-activated protein kinase; gene disruptions; linear minimal element construct; alternaria
MeSH headings : Alternaria / enzymology; Alternaria / genetics; Alternaria / pathogenicity; Brassica / microbiology; Gene Expression Regulation, Fungal; Hydrolases / genetics; Hydrolysis; Mitogen-Activated Protein Kinases / genetics; Mitogen-Activated Protein Kinases / physiology; Plant Diseases / microbiology; Virulence / genetics
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Fungal and yeast genetics research; Fungal Plant Pathogen Control
TL;DR: Results imply a correlation between virulence and the expression level of specific hydrolytic enzyme genes plus the presence of an unidentified pathway controlling these genes in addition to or in conjunction with the Amk1 pathway. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2007 article

TheMagnaporthe griseasnodprot1 homolog, MSP1, is required for virulence

Jeong, J. S., Mitchell, T. K., & Dean, R. A. (2007, June 22). FEMS Microbiology Letters, Vol. 273, pp. 157–165.

By: J. Jeong n, T. Mitchell n & R. Dean n 

author keywords: rice blast; hydrophobin; pathogenicity; rice; infection
MeSH headings : Blotting, Western; Fungal Proteins / chemistry; Fungal Proteins / genetics; Fungal Proteins / physiology; Gene Deletion; Hordeum / microbiology; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Molecular Sequence Data; Mutation; Recombinant Fusion Proteins / physiology; Sequence Alignment; Sequence Analysis, Protein; Virulence / genetics; Virulence Factors / chemistry; Virulence Factors / genetics; Virulence Factors / physiology
topics (OpenAlex): Plant-Microbe Interactions and Immunity; Plant Pathogens and Fungal Diseases; Fungal and yeast genetics research
TL;DR: This is the first report to the authors' knowledge that directly implicates a snodprot1 protein as a virulence factor in the rice blast fungus Magnaporthe grisea. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2006 article

An Oxidoreductase Is Involved in Cercosporin Degradation by the Bacterium Xanthomonas campestris pv. zinniae

Taylor, T. V., Mitchell, T. K., & Daub, M. E. (2006, September 1). Applied and Environmental Microbiology.

By: T. Taylor*, T. Mitchell* & M. Daub n

MeSH headings : Ascomycota / metabolism; Ascomycota / pathogenicity; Base Sequence; Biodegradation, Environmental; DNA, Bacterial / genetics; Genes, Bacterial; Genetic Complementation Test; Molecular Sequence Data; Mutagenesis; Mycotoxins / metabolism; Oxidoreductases / genetics; Oxidoreductases / metabolism; Perylene / analogs & derivatives; Perylene / chemistry; Perylene / metabolism; Plants / microbiology; Xanthomonas campestris / enzymology; Xanthomonas campestris / genetics; Xanthomonas campestris / metabolism
topics (OpenAlex): Plant Pathogenic Bacteria Studies; Plant-Microbe Interactions and Immunity; Plant Pathogens and Fungal Diseases
TL;DR: Five non-cercosporin-degrading mutants of a strain that rapidly degrades cercosporin were generated by ethyl methanesulfonate mutagenesis and then transformed with a genomic library from the wild-type strain to determine if they are sufficient for cercOSporin degradation. (via Semantic Scholar)
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15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2006 article

Bioinformatic analysis of expressed sequence tags derived from a compatible Alternaria brassicicola – Brassica oleracea interaction

CRAMER, R. O. B. E. R. T. A., ROTA, C. M. A. U. R. I. C. I. O. L. A., YANGRAE, C. H. O., THON, M. I. C. H. A. E. L., CRAVEN, K. E. L. L. Y. D., KNUDSON, D. E. N. N. I. S. L., … LAWRENCE, C. H. R. I. S. T. O. P. H. E. R. B. (2006, February 14). Molecular Plant Pathology.

By: R. Cramer *, C. Rota*, C. Yangrae*, M. Thon *, K. Craven n, D. Knudson*, T. Mitchell n, C. Lawrence*

topics (OpenAlex): Plant Disease Resistance and Genetics; Plant-Microbe Interactions and Immunity; Fungal and yeast genetics research
TL;DR: The results indicated that even a small number of organism-specific EST sequences can be very helpful to identify pathogen genes in a library derived from infected tissue, partially overcoming the limitation of the public databases for little studied organisms. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2006 article

Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea

Donofrio, N. M., Oh, Y., Lundy, R., Pan, H., Brown, D. E., Jeong, J. S., … Dean, R. A. (2006, June 1). Fungal Genetics and Biology, Vol. 43, pp. 605–617.

By: N. Donofrio n, Y. Oh  n, R. Lundy n, H. Pan n, D. Brown n, J. Jeong n, S. Coughlan*, T. Mitchell n, R. Dean n 

author keywords: nitrogen limitation; GATA transcription factors; metabolism; SPM1; protease; targeted gene disruption; pathogenicity
MeSH headings : Amino Acids / metabolism; Binding Sites; Biological Transport / genetics; DNA-Binding Proteins / genetics; GATA Transcription Factors / metabolism; Gene Expression; Gene Expression Regulation, Fungal; Genes, Fungal; Magnaporthe / genetics; Magnaporthe / pathogenicity; Nitrogen / metabolism; Oligonucleotide Array Sequence Analysis; Oryza / metabolism; Oryza / microbiology; Plant Diseases / microbiology; Promoter Regions, Genetic; Serine Endopeptidases / genetics
topics (OpenAlex): Fungal and yeast genetics research; Mycorrhizal Fungi and Plant Interactions; Plant-Microbe Interactions and Immunity
TL;DR: A genome-wide analysis of gene expression under nitrogen-limiting conditions in the rice blast pathogen Magnaporthe grisea resulted in targeted gene replacement on the vacuolar serine protease, SPM1, resulting in decreased sporulation and appressorial development as well as a greatly attenuated ability to cause disease. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2006 article

Influence of Temperature and Time of Year on Colonization of Bermudagrass Roots by Ophiosphaerella herpotricha

Walker, N. R., Mitchell, T. K., Morton, A. N., & Marek, S. M. (2006, October 1). Plant Disease.

By: N. Walker *, T. Mitchell n, A. Morton* & S. Marek *

author keywords: Cynodon dactylon; Ophiosphaerella korrae; O. narmari; spring dead spot
topics (OpenAlex): Plant Pathogens and Fungal Diseases; Plant Disease Resistance and Genetics; Plant Pathogens and Resistance
TL;DR: These studies suggest that infection and colonization of bermudagrass roots by O. herpotricha occurs over a wide range of cool soil temperatures, occurs in the spring, and can be variable in the autumn. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2006 article

MGOS: A Resource for Studying Magnaporthe grisea and Oryza sativa Interactions

Soderlund, C., Haller, K., Pampanwar, V., Ebbole, D., Farman, M., Orbach, M. J., … Dean, R. (2006, October 1). Molecular Plant-Microbe Interactions, Vol. 19, pp. 1055–1061.

By: C. Soderlund *, K. Haller*, V. Pampanwar*, D. Ebbole *, M. Farman *, M. Orbach *, G. Wang *, R. Wing * ...

author keywords: host-pathogen
MeSH headings : Computational Biology; DNA, Complementary / chemistry; Databases, Genetic; Expressed Sequence Tags; Gene Expression Profiling; Genome, Fungal; Genome, Plant; Internet; Magnaporthe / genetics; Magnaporthe / physiology; Mutation; Oligonucleotide Array Sequence Analysis; Oryza / genetics; Oryza / microbiology; Phenotype
topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Plant Pathogens and Fungal Diseases
TL;DR: The MGOS (Magnaporthe grisea Oryza sativa) web-based database contains data from interaction experiments in which M.grisea is the fungal pathogen that causes the rice blast disease and a consortium of fungal and rice geneticists was formed to study the interactions. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2006 journal article

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae

Genome Biology, 7(2).

By: M. Thon, H. Pan, S. Diener, J. Papalas, A. Taro, T. Mitchell, R. Dean 

Source: NC State University Libraries
Added: August 6, 2018

2005 article

Molecular identification of the turf grass rapid blight pathogen

Craven, K. D., Peterson, P. D., Windham, D. E., Mitchell, T. K., & Martin, S. B. (2005, January 1). Mycologia.

By: K. Craven n, P. Peterson*, D. Windham*, T. Mitchell n & S. Martin*

author keywords: cool-season grasses; Labyrinthula; phylogeny; stramenopile
MeSH headings : Genes, rRNA; Molecular Sequence Data; Myxomycetes / classification; Myxomycetes / genetics; Myxomycetes / isolation & purification; Myxomycetes / pathogenicity; Phylogeny; Plant Diseases / microbiology; Poaceae / microbiology; RNA, Ribosomal, 18S / genetics; Sequence Analysis, DNA; Zosteraceae / microbiology
topics (OpenAlex): Plant Disease Resistance and Genetics; Plant Pathogens and Fungal Diseases; Plant Pathogenic Bacteria Studies
TL;DR: It is found that rapid blight isolates indeed are placed firmly within the genus Labyrinthula and that they lack detectable genetic diversity in the 18S rDNA region. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
14. Life Below Water (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

PACLIMS: A component LIM system for high-throughput functional genomic analysis

BMC Bioinformatics, 6.

By: N. Donofrio, R. Rajagopalon, D. Brown, S. Diener, D. Windham, S. Nolin, A. Floyd, T. Mitchell ...

Source: NC State University Libraries
Added: August 6, 2018

2005 article

The genome sequence of the rice blast fungus Magnaporthe grisea

Dean, R. A., Talbot, N. J., Ebbole, D. J., Farman, M. L., Mitchell, T. K., Orbach, M. J., … Birren, B. W. (2005, April 1). Nature, Vol. 434, pp. 980–986.

By: R. Dean n , N. Talbot *, D. Ebbole *, M. Farman *, T. Mitchell n, M. Orbach *, M. Thon *, R. Kulkarni n ...

MeSH headings : Fungal Proteins / genetics; Fungal Proteins / metabolism; Genes, Fungal / genetics; Genome, Fungal; Guanosine Diphosphate / metabolism; Guanosine Triphosphate / metabolism; Magnaporthe / classification; Magnaporthe / genetics; Magnaporthe / metabolism; Magnaporthe / pathogenicity; Oryza / microbiology; Plant Diseases / microbiology; Point Mutation / genetics; Proteome / genetics; Proteome / metabolism; Receptors, G-Protein-Coupled / genetics; Repetitive Sequences, Nucleic Acid / genetics; Saccharomyces cerevisiae / metabolism; Signal Transduction; Virulence / genetics
topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Microbial Natural Products and Biosynthesis
TL;DR: The draft sequence of the M. grisea genome is reported, reflecting the clonal nature of this fungus imposed by widespread rice cultivation and analysis of the gene set provides an insight into the adaptations required by a fungus to cause disease. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 article

Corrigendum to âCharacterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags fromTrichoderma reeseiâ [FEMS Microbiol. Lett. 230 (2004) 275â282]

Diener, S. E., Dunn-Coleman, N., Foreman, P., Houfek, T. D., Teunissen, P. J. M., Solingen, P., … Dean, R. A. (2004, June 1). FEMS Microbiology Letters, Vol. 235, p. 209.

By: S. Diener n, N. Dunn-Coleman, P. Foreman, T. Houfek n, P. Teunissen, P. Solingen, L. Dankmeyer, T. Mitchell n, M. Ward, R. Dean n 

topics (OpenAlex): Microbial Community Ecology and Physiology
Sources: NC State University Libraries, NC State University Libraries
Added: August 6, 2018

2004 article

Insight into Trichoderma reesei’s genome content, organization and evolution revealed through BAC library characterization

Diener, S. E., Chellappan, M. K., Mitchell, T. K., Dunn-Coleman, N., Ward, M., & Dean, R. A. (2004, November 6). Fungal Genetics and Biology, Vol. 41, pp. 1077–1087.

By: S. Diener n, M. Chellappan n, T. Mitchell n, N. Dunn-Coleman, M. Ward & R. Dean n 

author keywords: Trichoderma reesei; bacterial artificial chromosome (BAC); physical map; genome organization; secretion; biomass degradation; repetitive element
MeSH headings : Chromosome Mapping; Chromosomes, Artificial, Bacterial; Contig Mapping; DNA Fingerprinting; DNA Transposable Elements / genetics; DNA, Fungal / chemistry; DNA, Fungal / genetics; DNA, Fungal / isolation & purification; Fungal Proteins / genetics; Fungal Proteins / physiology; Genome, Fungal; Genomic Library; Molecular Sequence Data; Nucleic Acid Hybridization; Podospora / genetics; Polymorphism, Restriction Fragment Length; Sequence Analysis, DNA; Sequence Homology; Trichoderma / enzymology; Trichoderma / genetics
topics (OpenAlex): Biofuel production and bioconversion; RNA and protein synthesis mechanisms; Genomics and Phylogenetic Studies
TL;DR: A genomic framework for Trichoderma reesei is created and several copies of an element with similarity to the Podospora anserina transposon, PAT are identified. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2003 article

Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags fromTrichoderma reesei

Diener, S. E., Dunn-Coleman, N., Foreman, P., Houfek, T. D., Teunissen, P. J. M., Solingen, P., … Dean, R. A. (2003, December 30). FEMS Microbiology Letters, Vol. 230, pp. 275–282.

By: S. Diener n, N. Dunn-Coleman, P. Foreman, T. Houfek n, P. Teunissen, P. Solingen, L. Dankmeyer, T. Mitchell n, M. Ward, R. Dean n 

author keywords: secretion; protein processing; Trichoderma reesei; expressed sequence tag
MeSH headings : Computational Biology; Expressed Sequence Tags; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Library; Protein Processing, Post-Translational; Protein Transport; Sequence Analysis, DNA; Trichoderma / genetics
topics (OpenAlex): Fungal and yeast genetics research; Biofuel production and bioconversion; Bioinformatics and Genomic Networks
TL;DR: In an attempt to identify genes involved in protein folding and ornamentation steps in Trichoderma reesei, the 5' ends of 21888 cDNA clones were sequenced from which a unique set of over 5000 were also 3' sequenced. (via Semantic Scholar)
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2003 article

Large scale parallel analysis of gene expression during infection‐related morphogenesis of Magnaporthe grisea

Takano, Y., Choi, W., Mitchell, T. K., Okuno, T., & Dean, R. A. (2003, August 6). Molecular Plant Pathology, Vol. 4, pp. 337–346.

By: Y. Takano *, W. Choi n, T. Mitchell n, T. Okuno* & R. Dean n 

topics (OpenAlex): Fungal and yeast genetics research; Plant-Microbe Interactions and Immunity; Fungal Biology and Applications
TL;DR: Gene expression in ungerminated conidia, during appressorium formation, and during mycelial growth was investigated with a novel highly sensitive dendrimer based detection system and results provide a powerful resource for furthering understanding of gene expression during infection-related morphogenesis and for the functional analysis of M. grisea genes involved in fungal infection. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2003 article

The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens

Mitchell, T. K., Thon, M. R., Jeong, J. S., Brown, D., Deng, J., & Dean, R. A. (2003, June 12). New Phytologist, Vol. 159, pp. 53–61.

By: T. Mitchell n, M. Thon  n, J. Jeong n, D. Brown n, J. Deng n & R. Dean n 

author keywords: Magnaporthe grisea; rice blast; genomic tools; BAC; physical map; synteny; whole genome comparison; fungi
topics (OpenAlex): Wheat and Barley Genetics and Pathology; Mycotoxins in Agriculture and Food; Plant-Microbe Interactions and Immunity
TL;DR: This review will describe the recent development of tools for whole or partial genome analysis and multigenome comparisons and focuses on the rice blast pathosystem as a case study. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2003 article

Transcriptional Regulation of Biomass-degrading Enzymes in the Filamentous Fungus Trichoderma reesei

Foreman, P. K., Brown, D., Dankmeyer, L., Dean, R., Diener, S., Dunn-Coleman, N. S., … Ward, M. (2003, August 1). Journal of Biological Chemistry, Vol. 278, pp. 31988–31997.

By: P. Foreman *, D. Brown n, L. Dankmeyer, R. Dean n , S. Diener n, N. Dunn-Coleman, F. Goedegebuur, T. Houfek n ...

MeSH headings : Biomass; DNA, Complementary; Enzymes / genetics; Enzymes / metabolism; Expressed Sequence Tags; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Fungal; Hydrolysis; Molecular Sequence Data; Transcription, Genetic; Trichoderma / enzymology
topics (OpenAlex): Biofuel production and bioconversion; Fungal and yeast genetics research; Microbial Metabolic Engineering and Bioproduction
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Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2003 article

Xanosporic acid, an intermediate in bacterial degradation of the fungal phototoxin cercosporin

Mitchell, T. K., Alejos-Gonzalez, F., Gracz, H. S., Danehower, D. A., Daub, M. E., & Chilton, W. S. (2003, March 1). Phytochemistry.

By: T. Mitchell n, F. Alejos-Gonzalez n, H. Gracz n, D. Danehower n, M. Daub n & W. Chilton n

author keywords: Xanthomonas campestris pv. zinniae; bacterial detoxification; perylenequinone; phototoxin; xanosporolactone; xanosporic acid
MeSH headings : Benz(a)Anthracenes / chemistry; Benz(a)Anthracenes / isolation & purification; Benz(a)Anthracenes / metabolism; Biodegradation, Environmental; Carboxylic Acids / chemistry; Carboxylic Acids / metabolism; Circular Dichroism; Fungi / chemistry; Lactones / chemistry; Lactones / isolation & purification; Nuclear Magnetic Resonance, Biomolecular; Oxidation-Reduction; Perylene / analogs & derivatives; Perylene / chemistry; Perylene / metabolism; Stereoisomerism; Xanthomonas campestris / metabolism
topics (OpenAlex): Photodynamic Therapy Research Studies; Protist diversity and phylogeny; Microbial Natural Products and Biosynthesis
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UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2002 article

Biodegradation of the Polyketide Toxin Cercosporin

Mitchell, T. K., Chilton, W. S., & Daub, M. E. (2002, August 28). Applied and Environmental Microbiology.

By: T. Mitchell*, W. Chilton n & M. Daub n

MeSH headings : Benz(a)Anthracenes / toxicity; Biodegradation, Environmental; Biological Assay; Carboxylic Acids / toxicity; Kinetics; Lactones / toxicity; Perylene / analogs & derivatives; Perylene / metabolism; Phenotype; Pseudomonas / metabolism; Time Factors; Xanthomonas / metabolism
topics (OpenAlex): Plant Disease Resistance and Genetics; Plant Pathogens and Fungal Diseases; Plant-Microbe Interactions and Immunity
TL;DR: Xanosporic acid and its more stable lactone derivative, xanosporolactone, are nontoxic to cercosporin-sensitive fungi and to plant tissue and are labile in the presence of light. (via Semantic Scholar)
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15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2002 article

MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea

Martin, S. L., Blackmon, B. P., Rajagopalan, R., Houfek, T. D., Sceeles, R. G., Denn, S. O., … Dean, R. (2002, January 1). Nucleic Acids Research, Vol. 30, pp. 121–124.

By: S. Martin  n, B. Blackmon, R. Rajagopalan, T. Houfek, R. Sceeles, S. Denn, T. Mitchell, D. Brown, R. Wing, R. Dean 

MeSH headings : Base Sequence; Chromosome Mapping; Chromosomes, Artificial, Bacterial; Chromosomes, Fungal; Database Management Systems; Databases, Genetic; Forecasting; Genetic Markers; Genome, Fungal; Genomic Library; Information Storage and Retrieval; Internet; Magnaporthe / genetics; Oryza / microbiology; Plant Diseases
topics (OpenAlex): Fungal and yeast genetics research; Plant Pathogens and Fungal Diseases; Genomics and Phylogenetic Studies
TL;DR: A federated database for genome studies of Magnaporthe grisea, the causal agent of rice blast disease, is created by integrating end sequence data from BAC clones, genetic marker data and BAC contig assembly data. (via Semantic Scholar)
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UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

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