Genome Resources for Seven Fungal Isolates That Cause Dollar Spot Disease in Turfgrass, Including Clarireedia jacksonii and C. monteithiana - Crouch, Jo Anne; Beirn, Lisa A.; Boehm, Michael J.; Carbone, Ignazio; Clarke, Bruce B.; Kerns, James P.; Malapi-Wight, Martha; Mitchell, Thomas K.; Venu, R. C.; Tredway, Lane P. (PLANT DISEASE, 2021)
Keywords: Agrostis stolonifera; Cynodon dactylon; dollar spot; Festuca rubra; fungi; Paspalum vaginatum; pathogen diversity; Rutstroemiaceae; Sclerotinia homoeocarpa; turf; turfgrass

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae - Nunes, C. C.; Gowda, M.; Sailsbery, J.; Xue, M. F.; Chen, F.; Brown, D. E.; Oh, Y.; Mitchell, T. K.; Dean, Ralph (BMC Genomics, 2011)

Gene Ontology annotation of the rice blast fungus, Magnaporthe oryzae - Meng, Shaowu; Brown, Douglas E.; Ebbole, Daniel J.; Torto-Alalibo, Trudy; Oh, Yeon Yee; Deng, Jixin; Mitchell, Thomas K.; Dean, Ralph A. (BMC MICROBIOLOGY, 2009)

Anastomosis is required for virulence of the fungal necrotroph Alternaria brassicicola - Craven, Kelly D.; Velez, Heriberto; Cho, Yangrae; Lawrence, Christopher B.; Mitchell, Thomas K. (EUKARYOTIC CELL, 2008)

Transcriptome analysis reveals new insight into appressorium formation and function in the rice blast fungus Magnaporthe oryzae - Oh, Yeonyee; Donofrio, Nicole; Pan, Huaqin; Coughlan, Sean; Brown, Douglas E.; Meng, Shaowu; Mitchell, Thomas; Dean, Ralph A. (GENOME BIOLOGY, 2008)

A systematic analysis of T-DNA insertion events in Magnaporthe oryzae - Meng, Yan; Patel, Gayatri; Heist, Melanie; Betts, Melania F.; Tucker, Sara L.; Galadima, Natalia; Donofrio, Nicole M.; Brown, Doug; Mitchell, Thomas K.; Li, Lei; Xu, Jin-Rong; Orbach, Marc; et al. (FUNGAL GENETICS AND BIOLOGY, 2007)
Keywords: agrobacterium-mediated transformation; insertional mutagenesis; inverse PCR

Development of a high throughput transformation system for insertional mutagenesis in Magnaporthe oryzae - Betts, Melania F.; Tucker, Sara L.; Galadima, Natalia; Meng, Yan; Patel, Gayatri; Li, Lei; Donofrio, Nicole; Floyd, Anna; Nolin, Shelly; Brown, Doug; Mandel, M. Alejandra; Mitchell, Thomas K.; et al. (FUNGAL GENETICS AND BIOLOGY, 2007)
Keywords: Magnaporthe oryzae; Insertional mutagenesis; Agrobacterium tumefaciens-mediated transformation; CaCl2/PEG-mediated transformation; pathogenicity

Expressed sequence tags from Phytophthora sojae reveal genes specific to development and infection - Torto-Alalibo, Trudy A.; Tripathy, Sucheta; Smith, Brian M.; Arredondo, Felipe D.; Zhou, Lecong; Li, Hua; Chibucos, Marcus C.; Qutob, Dinah; Gijzen, Mark; Mao, Chunhong; Sobral, Bruno W. S.; Waugh, Mark E.; et al. (MOLECULAR PLANT-MICROBE INTERACTIONS, 2007)
Keywords: effectors

The Fus3/Kss1 MAP kinase homolog Amk1 regulates the expression of genes encoding hydrolytic enzymes in Alternaria brassicicola - Cho, Yangrae; Cramer, Robert A., Jr.; Kim, Kwang-Hyung; Davis, Josh; Mitchell, Thomas K.; Figuli, Patricia; Pryor, Barry M.; Lemasters, Emily; Lawrence, Christopher B. (FUNGAL GENETICS AND BIOLOGY, 2007)
Keywords: necrotroph; pathogenicity factor; mitogen-activated protein kinase; gene disruptions; linear minimal element construct; alternaria

The Magnaporthe grisea snodprot1 homolog, MSPI, is required for virulence - Jeong, Jun Seop; Mitchell, Thomas K.; Dean, Ralph A. (FEMS MICROBIOLOGY LETTERS, 2007)
Keywords: rice blast; hydrophobin; pathogenicity; rice; infection

An oxidoreductase is involved in cercosporin degradation by the bacterium Xanthomonas campestris pv. zinniae - Taylor, Tanya V.; Mitchell, Thomas K.; Daub, Margaret E. (APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006)

Bioinformatic analysis of expressed sequence tags derived from a compatible Alternaria brassicicola-Brassica oleracea interaction - Cramer, RA; La Rota, CM; Cho, Y; Thon, M; Craven, KD; Knudson, DL; Mitchell, TK; Lawrence, CB (MOLECULAR PLANT PATHOLOGY, 2006)

Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea - Donofrio, N. M.; Oh, Y.; Lundy, R.; Pan, H.; Brown, D. E.; Jeong, J. S.; Coughlan, S.; Mitchell, T. K.; Dean, R. A. (FUNGAL GENETICS AND BIOLOGY, 2006)
Keywords: nitrogen limitation; GATA transcription factors; metabolism; SPM1; protease; targeted gene disruption; pathogenicity

Influence of temperature and time of year on colonization of bermudagrass roots by Ophiosphaerella herpotricha - Walker, N. R.; Mitchell, T. K.; Marek, S. M. (PLANT DISEASE, 2006)
Keywords: Cynodon dactylon; Ophiosphaerella korrae; O. narmari; spring dead spot

MGOS: A resource for studying Magnaporthe grisea and Oryza sativa interactions - Soderlund, Carol; Haller, Karl; Pampanwar, Vishal; Ebbole, Daniel; Farman, Mark; Orbach, Marc J.; Wang, Guo-Liang; Wing, Rod; Xu, Jin-Rong; Brown, Doug; Mitchell, Thomas; Dean, Ralph (MOLECULAR PLANT-MICROBE INTERACTIONS, 2006)
Keywords: host-pathogen

The role of transposable element clusters in genome evolution and loss of synteny in the rice blast fungus Magnaporthe oryzae - Thon, M. R.; Pan, H. Q.; Diener, S.; Papalas, J.; Taro, A.; Mitchell, T. K.; Dean, R. A. (Genome Biology, 2006)

Molecular identification of the turf grass rapid blight pathogen - Craven, KD; Peterson, PD; Windham, DE; Mitchell, TK; Martin, SB (MYCOLOGIA, 2005)
Keywords: cool-season grasses; Labyrinthula; phylogeny; stramenopile

PACLIMS: A component LIM system for high-throughput functional genomic analysis - Donofrio, N.; Rajagopalon, R.; Brown, D.; Diener, S.; Windham, D.; Nolin, S.; Floyd, A.; Mitchell, T.; Galadima, N.; Tucker, S.; Orbach, M. J.; Patel, G.; et al. (BMC Bioinformatics, 2005)

The genome sequence of the rice blast fungus Magnaporthe grisea - Dean, RA; Talbot, NJ; Ebbole, DJ; Farman, ML; Mitchell, TK; Orbach, MJ; Thon, M; Kulkarni, R; Xu, JR; Pan, HQ; Read, ND; Lee, YH; et al. (NATURE, 2005)

Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei - Diener, SE; Dunn-Coleman, N; Foreman, P; Houfek, TD; Teunissen, PJM; Solingen, P; Dankmeyer, L; Mitchell, TK; Ward, M; Dean, RA (FEMS MICROBIOLOGY LETTERS, 2004)
Keywords: secretion; protein processing; Trichoderma reesei; expressed sequence tag

Characterization of the protein processing and secretion pathways in a comprehensive set of expressed sequence tags from Trichoderma reesei (vol 230, pg 275, 2004) - Diener, S. E.; Dunn-Coleman, N.; Foreman, P.; Houfek, T. D.; Teunissen, P. J. M.; Solingen, P. Van; Dankmeyer, L.; Mitchell, T. K.; Ward, M.; Dean, Ralph (FEMS Microbiology Letters, 2004)

Insight into Trichoderma reesei's genome content, organization and evolution revealed through BAC library characterization - Diener, SE; Chellappan, MK; Mitchell, TK; Dunn-Coleman, N; Ward, M; Dean, RA (FUNGAL GENETICS AND BIOLOGY, 2004)
Keywords: Trichoderma reesei; bacterial artificial chromosome (BAC); physical map; genome organization; secretion; biomass degradation; repetitive element

Large scale parallel analysis of gene expression during infection-related morphogenesis of Magnaporthe grisea - Takano, Y; Choi, WB; Mitchell, TK; Okuno, T; Dean, RA (MOLECULAR PLANT PATHOLOGY, 2003)

The rice blast pathosystem as a case study for the development of new tools and raw materials for genome analysis of fungal plant pathogens - Mitchell, TK; Thon, MR; Jeong, JS; Brown, D; Deng, JX; Dean, RA (NEW PHYTOLOGIST, 2003)
Keywords: Magnaporthe grisea; rice blast; genomic tools; BAC; physical map; synteny; whole genome comparison; fungi

Transcriptional regulation of biomass-degrading enzymes in the filamentous fungus Trichoderma reesei - Foreman, PK; Brown, D; Dankmeyer, L; Dean, R; Diener, S; Dunn-Coleman, NS; Goedegebuur, F; Houfek, TD; England, GJ; Kelley, AS; Meerman, HJ; Mitchell, T; et al. (JOURNAL OF BIOLOGICAL CHEMISTRY, 2003)

Xanosporic acid, an intermediate in bacterial degradation of the fungal phototoxin cercosporin - Mitchell, TK; Alejos-Gonzalez, F; Gracz, HS; Danehower, DA; Daub, ME; Chilton, WS (PHYTOCHEMISTRY, 2003)
Keywords: Xanthomonas campestris pv. zinniae; bacterial detoxification; perylenequinone; phototoxin; xanosporolactone; xanosporic acid

Biodegradation of the polyketide toxin cercosporin - Mitchell, TK; Chilton, WS; Daub, ME (APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2002)

MagnaportheDB: a federated solution for integrating physical and genetic map data with BAC end derived sequences for the rice blast fungus Magnaporthe grisea - Martin, SL; Blackmon, BP; Rajagopalan, R; Houfek, TD; Sceeles, RG; Denn, SO; Mitchell, TK; Brown, DE; Wing, RA; Dean, RA (NUCLEIC ACIDS RESEARCH, 2002)