Vincent L C Chiang
Is this your profile?
Claim your Citation Index profile in order to display more information about you and gain access to Libraries services. Just create or connect your ORCID iD.
Create or connect your ORCID iD
Works (116)
Updated: August 18th, 2023 21:18
2023 article
Cell-type-specific PtrWOX4a and PtrVCS2 form a regulatory nexus with a histone modification system for stem cambium development in Populus trichocarpa
Dai, X., Zhai, R., Lin, J., Wang, Z., Meng, D., Li, M., … Li, W. (2023, January 9). NATURE PLANTS.
MeSH headings : Cambium / genetics; Populus / genetics; Epigenesis, Genetic; Histone Code; Wood; Gene Expression Regulation, Plant
www.nature.com (publisher PDF)
Source: Web Of Science
Added: January 23, 2023
2023 article
Exceptionally high genetic variance of the doubled haploid (DH) population of poplar
Liu, C., Wang, S., Liu, Y., Wang, M., Fan, E., Liu, C., … Qu, G. (2023, May 4). JOURNAL OF FORESTRY RESEARCH, Vol. 5.
author keywords: Populus; Anther culture; Doubled haploid; Genetic variance; Flow cytometry
Sources: Web Of Science, ORCID
Added: May 30, 2023
2022 article
Dimerization of PtrMYB074 and PtrWRKY19 mediates transcriptional activation of PtrbHLH186 for secondary xylem development in Populus trichocarpa
Liu, H., Gao, J., Sun, J., Li, S., Zhang, B., Wang, Z., … Li, W. (2022, March 3). NEW PHYTOLOGIST, Vol. 5.
author keywords: Populus trichocarpa; protein-protein interaction; secondary xylem development; transcription factor; wood formation
MeSH headings : Cell Wall / metabolism; Dimerization; Gene Expression Regulation, Plant; Plant Proteins / genetics; Plant Proteins / metabolism; Populus; Transcriptional Activation; Wood; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: March 21, 2022
2022 journal article
The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis
GIGASCIENCE, 11.
author keywords: Juglans mandshurica; PacBio SMART; Hi-C; HiFi; genome assembly; comparative genomics; juglone; lipid
MeSH headings : Chromosomes; Genome; Juglans / genetics; Lipids; Naphthoquinones
Source: Web Of Science
Added: September 19, 2022
2022 journal article
p A PtrLBD39-mediated transcriptional network regulates tension wood formation in Populus trichocarpa
PLANT COMMUNICATIONS, 3(1).
author keywords: tension wood; cellulose; lignin; transcriptional regulatory network; transcriptomics; chromatin immunoprecipitation sequencing
MeSH headings : Biomechanical Phenomena; Gene Expression Regulation, Plant / physiology; Gene Regulatory Networks / physiology; Genes, Plant / genetics; Genes, Plant / physiology; Laser Capture Microdissection; Populus / genetics; Populus / physiology; Wood / genetics; Wood / physiology; Xylem
Sources: Web Of Science, ORCID
Added: January 31, 2022
2021 journal article
A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa
COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182.
author keywords: Lignin biosynthesis; Multiscale modeling; Cross-regulatory influences; Random forests
Sources: Web Of Science, ORCID
Added: September 20, 2021
2021 review
An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use
[Review of ]. HORTICULTURAE, 7(8).
author keywords: conifers; flowering; seed production; pollination; phytohormones; tree management; nutrient fertilization
Sources: Web Of Science, ORCID
Added: September 7, 2021
2021 article
CRISPR-Cas9 editing of CAFFEOYL SHIKIMATE ESTERASE 1 and 2 shows their importance and partial redundancy in lignification in Populus tremula x P. alba
Vries, L., Brouckaert, M., Chanoca, A., Kim, H., Regner, M. R., Timokhin, V. I., … Boerjan, W. (2021, August 6). PLANT BIOTECHNOLOGY JOURNAL, Vol. 11.
author keywords: poplar; CRISPR-Cas9; CSE; lignin; phenylpropanoids; metabolic engineering
MeSH headings : CRISPR-Cas Systems / genetics; Carboxylesterase; Gene Expression Regulation, Plant; Lignin / metabolism; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Populus / genetics; Populus / metabolism
Sources: Web Of Science, ORCID
Added: August 23, 2021
2021 review
Cooperative Regulation of Flavonoid and Lignin Biosynthesis in Plants
[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 109–126.
author keywords: Cooperative regulation; transcription factor; flavonoid; lignin; phenylpropanoid pathway
Source: Web Of Science
Added: April 19, 2021
2021 journal article
Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa
FRONTIERS IN PLANT SCIENCE, 12.
author keywords: protein interaction; monolignol biosynthesis; wood formation; Populus trichocarpa; BiFC; metabolic flux
Sources: Web Of Science, ORCID
Added: November 8, 2021
2021 review
Histone Acetylation Changes in Plant Response to Drought Stress
[Review of ]. GENES, 12(9).
author keywords: drought stress; histone acetylation; histone acetyltransferases (HATs); histone deacetylases (HDACs)
MeSH headings : Acetylation; Adaptation, Biological / genetics; Adaptation, Biological / physiology; Dehydration / genetics; Dehydration / metabolism; Dehydration / physiopathology; Droughts; Histone Acetyltransferases / metabolism; Histone Deacetylases / metabolism; Histones / metabolism; Plant Development / genetics; Plant Development / physiology; Protein Processing, Post-Translational
Source: Web Of Science
Added: October 4, 2021
2021 review
MYB-Mediated Regulation of Anthocyanin Biosynthesis
[Review of ]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6).
author keywords: MYB; transcription factor; anthocyanin; positive regulation; negative regulation; environment; MBW complexes
MeSH headings : Anthocyanins / biosynthesis; Gene Expression Regulation, Plant; Gene Regulatory Networks; Phylogeny; Plant Proteins / chemistry; Plant Proteins / metabolism; Transcription Factors / chemistry; Transcription Factors / metabolism
Source: Web Of Science
Added: May 24, 2021
2021 journal article
Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana)
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(19).
author keywords: Padus virginiana; leaf color; anthocyanin biosynthesis; transcriptomics; metabolomic
MeSH headings : Anthocyanins / biosynthesis; Biosynthetic Pathways; Chlorophyll / biosynthesis; Color; Computational Biology / methods; Gene Expression Profiling; Gene Expression Regulation, Plant; Metabolome; Metabolomics / methods; Pigmentation / genetics; Plant Leaves / genetics; Plant Leaves / metabolism; Prunus / physiology; Transcriptome
Source: Web Of Science
Added: October 26, 2021
2021 journal article
Qu-2, a robust poplar suspension cell line for molecular biology
JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740.
author keywords: Qu-2 cell line; Suspension cell; Poplar; Protoplast isolation; Transient transformation
Sources: Web Of Science, ORCID
Added: January 4, 2021
2021 journal article
Transcriptional reprogramming of xylem cell wall biosynthesis in tension wood
PLANT PHYSIOLOGY, 186(1), 250–269.
MeSH headings : Cell Wall / metabolism; Gene Expression Regulation, Plant; Populus / anatomy & histology; Populus / genetics; Transcription, Genetic; Wood / genetics; Wood / metabolism; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: May 27, 2021
2020 journal article
Fungal Pretreatment and Enzymatic Hydrolysis of Genetically-modified Populus trichocarpa
BIORESOURCES, 15(3), 6488–6505.
author keywords: Transgenic poplar; Fungal treatment; Ceriporiopsis; Pretreatment; Enzymatic hydrolysis; Lignin
Sources: Web Of Science, ORCID
Added: August 24, 2020
2020 review
Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease
[Review of ]. FRONTIERS IN MICROBIOLOGY, 11.
author keywords: microbial interaction; biological control agents; soil-borne disease; consortia; microbiome and community
Sources: Web Of Science, ORCID
Added: November 16, 2020
2020 journal article
Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar
BIOTECHNOLOGY FOR BIOFUELS, 13(1).
author keywords: Caldicellulosiruptor; Extreme thermophiles; Lignocellulose; Biofuel; Poplar
Sources: Web Of Science, ORCID
Added: April 6, 2020
2019 journal article
A novel synthetic-genetic-array-based yeast one-hybrid system for high discovery rate and short processing time
GENOME RESEARCH, 29(8), 1343–1351.
MeSH headings : Animals; DNA / genetics; DNA / metabolism; Gene Expression Regulation; Gene Regulatory Networks; Genetic Markers; Humans; Meiosis; Microarray Analysis / instrumentation; Microarray Analysis / methods; Plasmids / chemistry; Plasmids / metabolism; Ploidies; Populus / cytology; Protein Binding; Protoplasts / cytology; Protoplasts / metabolism; Saccharomyces cerevisiae / genetics; Saccharomyces cerevisiae / metabolism; Time Factors; Transcription Factors / genetics; Transcription Factors / metabolism; Two-Hybrid System Techniques
Sources: Web Of Science, ORCID
Added: September 16, 2019
2019 journal article
ANATOMICAL, PHYSICAL, AND MECHANICAL PROPERTIES OF TRANSGENIC LOBLOLLY PINE (PINUS TAEDA L.) MODIFIED FOR INCREASED DENSITY
WOOD AND FIBER SCIENCE, 51(2), 173–182.
author keywords: Density; specific gravity; quantitative wood anatomy; tracheid; MOE; MOR; transgenic; Pinus taeda L.
Sources: Web Of Science, ORCID
Added: August 12, 2019
2019 journal article
Anatomy and Chemistry of Populus trichocarpa with Genetically Modified Lignin Content
BIORESOURCES, 14(3), 5729–5746.
author keywords: Populus trichocarpa; Lignin content; Syringyl-to-guaiacyl (S/G) ratio; Stem diameter; CAD; C3H; C4H
Sources: Web Of Science, ORCID
Added: July 22, 2019
2019 journal article
CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa
NEW PHYTOLOGIST, 222(1), 244–260.
author keywords: co-immunoprecipitation; enzyme activity; monolignol biosynthetic pathway; nuclear magnetic resonance (NMR); Populus trichocarpa; stem-differentiating xylem protein
MeSH headings : Aldehyde Oxidoreductases / genetics; Aldehyde Oxidoreductases / metabolism; Down-Regulation / genetics; Gene Expression Regulation, Plant; Lignin / metabolism; Magnetic Resonance Spectroscopy; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified; Populus / genetics; Populus / metabolism; RNA Interference; Recombinant Proteins / metabolism; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: December 17, 2018
2019 personal communication
Certification for gene-edited forests
Strauss, S. H., Boerjan, W., Chiang, V., Costanza, A., Coleman, H., Davis, J. M., … Valenzuela, S. (2019, August 23).
MeSH headings : Certification; Climate Change; Consumer Behavior; Forests; Gene Editing; Pest Control, Biological; Trees / genetics; Wood
Source: Web Of Science
Added: September 16, 2019
2019 review
Enzyme-Enzyme Interactions in Monolignol Biosynthesis
[Review of ]. FRONTIERS IN PLANT SCIENCE, 9.
author keywords: monolignol biosynthesis; protein-protein interaction; lignin; enzyme kinetics; BiFC; co-immunoprecipitation
Sources: Web Of Science, ORCID
Added: January 28, 2019
2019 journal article
Flux modeling for monolignol biosynthesis
Current Opinion in Biotechnology, 56, 187–192.
MeSH headings : Biosynthetic Pathways; Kinetics; Lignin / biosynthesis; Metabolic Engineering; Metabolic Flux Analysis; Models, Biological
Sources: Crossref, ORCID
Added: April 24, 2019
2019 journal article
Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii
NATURE COMMUNICATIONS, 10(1).
MeSH headings : Biomass; Cellulose / metabolism; Clostridiales / genetics; Clostridiales / metabolism; Ethanol / metabolism; Fermentation; Industrial Microbiology; Lignin / metabolism; Metabolic Engineering; Plants, Genetically Modified / chemistry; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Polysaccharides / metabolism; Populus / chemistry; Populus / genetics; Populus / metabolism
Sources: Web Of Science, ORCID
Added: August 26, 2019
2019 journal article
Thermo-mechanical Behavior of Genetically Modified Populus trichocarpa
BIORESOURCES, 14(2), 4760–4773.
author keywords: Genetically modified poplar; Lignin; Viscoelastic properties; Glass transition temperature; Dynamic mechanical analysis; Cinnamyl alcohol dehydrogenase (CAD); Cinnamate 3-hydroxylase (C3H); Cinnamate 4-hydroxylase (C4H)
Sources: Web Of Science, ORCID
Added: April 20, 2020
2018 journal article
Altered Lignin Content and Composition in Transgenic Populus trichocarpa Results in a Decrease of Modulus of Elasticity
BIORESOURCES, 13(4), 7698–7708.
author keywords: CAD; C3H; C4H; Lignin; Glucose; Xylose; Modulus of Elasticity
Sources: Web Of Science, ORCID
Added: January 14, 2019
2018 journal article
Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis
PLOS ONE, 13(3), e0193896.
Ed(s): D. Cullen
MeSH headings : Biosynthetic Pathways; Homeostasis; Lignin / biosynthesis; Metabolic Networks and Pathways; Monte Carlo Method; Plant Proteins / metabolism; Populus / enzymology; Populus / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2018 journal article
Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis
Nature Communications, 9(1), 1579.
MeSH headings : Gene Expression Regulation, Plant; Lignin / biosynthesis; Lignin / genetics; Plants, Genetically Modified / genetics; Populus / genetics; Populus / metabolism; Transcriptome / genetics; Trees / genetics; Trees / metabolism; Wood / chemistry; Wood / physiology; Xylem / metabolism
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2017 journal article
Characterization and enzymatic hydrolysis of wood from transgenic Pinus taeda engineered with syringyl lignin or reduced lignin content
CELLULOSE, 24(4), 1901–1914.
author keywords: Softwood; Lignin modification; Lignocellulose; Pyrolysis-molecular beam mass spectroscopy; Solid-state NMR
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Field-Grown Transgenic Hybrid Poplar with Modified Lignin Biosynthesis to Improve Enzymatic Saccharification Efficiency
ACS SUSTAINABLE CHEMISTRY & ENGINEERING, 5(3), 2407–2414.
author keywords: Transgenic; 4CL gene; Enzymatic saccharification; Hybrid poplar; Field-grown; Lignin
Source: Web Of Science
Added: August 6, 2018
2017 journal article
Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729.
author keywords: reciprocal cross-regulation; NAC transcription factors; alternative splicing; wood formation; Populus trichocarpa
MeSH headings : Alternative Splicing; Cell Wall / genetics; Cell Wall / metabolism; Cloning, Molecular; DNA, Plant; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks; Genes, Plant; Homeostasis; Multigene Family; Nuclear Proteins; Plant Leaves / genetics; Plant Leaves / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Shoots / genetics; Plant Shoots / metabolism; Populus / genetics; Populus / metabolism; Recombinant Proteins / genetics; Transcription Factors / genetics; Transcription Factors / metabolism; Transcriptional Activation / genetics; Transcriptome; Wood / genetics; Wood / growth & development; Xylem / genetics; Xylem / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Takayoshi Higuchi (1927–2017)
Journal of Wood Chemistry and Technology, 37(5), 405–406.
Source: Crossref
Added: August 28, 2020
2017 journal article
Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa
PLANTA, 245(5), 927–938.
author keywords: Wood formation; Transcriptome; Fiber cells; Vessel elements; Cell wall biosynthesis; Co-expression network
MeSH headings : Cell Wall / metabolism; Cellulose / metabolism; Cluster Analysis; Gene Expression Regulation, Plant; Lignin / metabolism; Molecular Sequence Annotation; Organ Specificity; Phloem / genetics; Phloem / growth & development; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Proteins / genetics; Populus / genetics; Populus / growth & development; Sequence Analysis, RNA; Transcription Factors / genetics; Transcriptome; Wood / genetics; Wood / growth & development; Xylem / genetics; Xylem / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018
2016 journal article
A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa
Tree Genetics & Genomes, 12(2).
author keywords: Lignin polymerization; Populus trichocarpa; Lignin peroxidase; LC-MS/MS; Lignin systems biology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2016 journal article
Bottom-up GGM algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways or processes
BMC BIOINFORMATICS, 17.
author keywords: Multilayered gene regulatory network; Pathway; Microarray or RNA-seq data
MeSH headings : Algorithms; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Computational Biology / methods; Gene Regulatory Networks; Humans; Metabolic Networks and Pathways / genetics; Signal Transduction / genetics; Transcriptome
Source: Web Of Science
Added: August 6, 2018
2015 journal article
4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa
MOLECULAR PLANT, 8(1), 176–187.
author keywords: monolignol biosynthesis; Populus trichocarpa; metabolic flux; reaction and inhibition kinetics; LC-MS/MS; 4-coumaroyl and caffeoyl shikimic acids
MeSH headings : Acyl Coenzyme A / metabolism; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Hydroxylation / drug effects; Plant Proteins / metabolism; Populus / drug effects; Populus / enzymology; Populus / metabolism; Propionates; Shikimic Acid / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa
JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168.
author keywords: shotgun discovery proteomics; absolute quantification; PC-IDMS; cellulose biosynthesis; transcription factor; targeted mass spectrometiry; SRM
MeSH headings : Carbohydrate Metabolism; Cellulose / biosynthesis; Cellulose / genetics; Chromatography, Liquid; Gene Expression Regulation, Plant; Molecular Sequence Annotation; Plant Proteins / genetics; Plant Proteins / isolation & purification; Plant Proteins / metabolism; Populus / genetics; Populus / metabolism; Proteome / genetics; Proteome / isolation & purification; Proteome / metabolism; Proteomics; Tandem Mass Spectrometry; Transcription Factors / genetics; Transcription Factors / isolation & purification; Transcription Factors / metabolism; Wood / chemistry; Wood / metabolism; Xylem / genetics; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2015 journal article
Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis
Proceedings of the National Academy of Sciences, 112(27), 8481–8486.
author keywords: AldOMT; COMT; lignin; phosphoproteomics; phosphoregulation
MeSH headings : Acrolein / analogs & derivatives; Acrolein / metabolism; Amino Acid Sequence; Binding Sites / genetics; Biocatalysis; Catechols / metabolism; Chromatography, Liquid; Electrophoresis, Polyacrylamide Gel; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Isoenzymes / genetics; Isoenzymes / metabolism; Lignin / biosynthesis; Methyltransferases / genetics; Methyltransferases / metabolism; Microscopy, Confocal; Molecular Sequence Data; Mutation; Phosphoproteins / metabolism; Phosphorylation; Plant Proteins / genetics; Plant Proteins / metabolism; Populus / enzymology; Populus / genetics; Populus / metabolism; Proteomics / methods; Protoplasts / enzymology; Protoplasts / metabolism; Sequence Homology, Amino Acid; Tandem Mass Spectrometry
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2015 article
Populus trichocarpa
AGROBACTERIUM PROTOCOLS, VOLUME 2, THIRD EDITION, Vol. 1224, pp. 357–363.
author keywords: Agrobacterium tumefaciens; Genetic transformation; Populus trichocarpa; Transgenic trees
MeSH headings : Agrobacterium tumefaciens / genetics; Agrobacterium tumefaciens / growth & development; Coculture Techniques; Genetic Engineering / methods; Plant Roots / growth & development; Plant Shoots / growth & development; Populus / genetics; Populus / growth & development; Populus / physiology; Regeneration; Transformation, Genetic
Source: Web Of Science
Added: August 6, 2018
2015 journal article
Wood characteristics and enzymatic saccharification efficiency of field-grown transgenic black cottonwood with altered lignin content and structure
CELLULOSE, 22(1), 683–693.
author keywords: Black cotton wood; Enzymatic saccharification; Field-grown; Lignin; Pretreatment; S/V ratio; Sugar yield; Transgenic
Source: Web Of Science
Added: August 6, 2018
2014 journal article
A new O-methyltransferase for monolignol synthesis in Carthamus tinctorius
Plant Biotechnology, 31(5), 545–553.
author keywords: O-Methyltransferase; Carthamus tinctorius; lignin; monolignol; flavonoid
Source: Web Of Science
Added: August 6, 2018
2014 journal article
A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue
NATURE PROTOCOLS, 9(9), 2180–2193.
MeSH headings : Base Sequence; Chromatin Immunoprecipitation / methods; DNA / metabolism; DNA Fragmentation; Histones / metabolism; Immunoprecipitation; Molecular Sequence Data; Populus / cytology; Populus / metabolism; Sequence Analysis, DNA; Transcription Factors / metabolism; Wood / cytology; Xylem / genetics; Xylem / metabolism
Source: Web Of Science
Added: August 6, 2018
2014 journal article
A simple improved-throughput xylem protoplast system for studying wood formation
NATURE PROTOCOLS, 9(9), 2194–2205.
MeSH headings : Cell Wall / metabolism; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Green Fluorescent Proteins; Populus / cytology; Populus / growth & development; Protoplasts / metabolism; Transfection / methods; Wood / cytology; Wood / growth & development; Xylem / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry
ANALYST, 139(21), 5439–5450.
MeSH headings : Chromatography, Liquid; Isotopes / chemistry; Proteins / analysis; Tandem Mass Spectrometry / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
Improved Protocol for Alkaline Nitrobenzene Oxidation of Woody and Non-Woody Biomass
Journal of Wood Chemistry and Technology, 35(1), 52–61.
author keywords: Nitrobenzene oxidation; survivival factors; lignin model compounds; Sr/V and B/V ratios
Sources: Crossref, Web Of Science
Added: August 6, 2018
2014 journal article
Phenolic Compounds and Expression of 4CL Genes in Silver Birch Clones and Pt4CL1a Lines
PLOS ONE, 9(12).
MeSH headings : Betula / enzymology; Betula / genetics; Betula / metabolism; Biomechanical Phenomena; Cloning, Molecular; Coenzyme A Ligases / deficiency; Coenzyme A Ligases / genetics; Gene Expression Regulation, Plant; Phenols / chemistry; Phenols / metabolism; Plant Leaves / genetics; Plants, Genetically Modified; Populus / genetics; RNA, Messenger / genetics; RNA, Messenger / metabolism; Solubility
Source: Web Of Science
Added: August 6, 2018
2014 journal article
Pop's Pipes: poplar gene expression data analysis pipelines
TREE GENETICS & GENOMES, 10(4), 1093–1101.
author keywords: Poplar; Microarray; RNA-seq data; Differentially expressed genes; Pathway enrichment analysis; Gene ontology enrichment analysis; Protein domain enrichment analysis; Pipeline; Gene ontology tree
Source: Web Of Science
Added: August 6, 2018
2014 journal article
Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling
The Plant Cell, 26(3), 876–893.
MeSH headings : Coenzyme A Ligases / genetics; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Immunoprecipitation; Lignin / biosynthesis; Mass Spectrometry; Models, Biological; Populus / metabolism; Propionates; RNA, Messenger / genetics; Substrate Specificity; Systems Biology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2014 journal article
The influence of lignin-carbohydrate complexes on the cellulase-mediated saccharification II: Transgenic hybrid poplars (Populus nigra L. and Populus maximowiczii A.)
FUEL, 116, 56–62.
author keywords: Hybrid P. trichocarpa; Lignin carbohydrate complexes (LCCs); Enzymatic saccharification; Syringaldehyde/vanillin ratio; 1H-13C NMR
Source: Web Of Science
Added: August 6, 2018
2014 journal article
Vibrational sum-frequency-generation (SFG) spectroscopy study of the structural assembly of cellulose microfibrils in reaction woods
CELLULOSE, 21(4), 2219–2231.
author keywords: Reaction wood; Tension wood; Compression wood; Cellulose microfibril assembly; Sum; frequency; generation spectroscopy; X-ray; diffraction
Sources: Web Of Science, ORCID
Added: August 6, 2018
2014 journal article
nnThe influence of lignin-carbohydrate complexes on the cellulase-mediated saccharification I: Transgenic black cottonwood (western balsam poplar, California poplar) P-trichocarpa including the xylan down-regulated and the lignin down-regulated lines
FUEL, 119, 207–213.
author keywords: Transgenic P. trichocarpa; Lignin-carbohydrate complexes (LCCs); Enzymatic saccharification; Fermentable sugars; H-1-C-13 HSQC NMR
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
A lignan O-methyltransferase catalyzing the regioselective methylation of matairesinol in Carthamus tinctorius
PLANT BIOTECHNOLOGY, 30(2), 97–109.
author keywords: Carthamus tinctorius; lignan; matairesinol; O-methyltransferase; regioselective methylation
Source: Web Of Science
Added: August 6, 2018
2013 journal article
High-level gene expression in differentiating xylem of tobacco driven by a 2.0 kb Poplar COMT2 promoter and a 4 x 35S enhancer
PLANT BIOTECHNOLOGY, 30(2), 191–198.
author keywords: PtrCOMT2 promoter; xylem-specific; 4 x 35S enhancer; woody plants; genetic engineering
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes
PLANT PHYSIOLOGY, 161(3), 1501–1516.
MeSH headings : Allosteric Regulation / drug effects; Binding Sites; Biosynthetic Pathways / drug effects; Blotting, Western; Caffeic Acids / pharmacology; Coenzyme A / metabolism; Coenzyme A Ligases / antagonists & inhibitors; Coenzyme A Ligases / metabolism; Computer Simulation; Coumaric Acids / chemistry; Coumaric Acids / metabolism; Coumaric Acids / pharmacology; Kinetics; Lignin / biosynthesis; Lignin / chemistry; Phenylpropionates / metabolism; Phosphoproteins / metabolism; Phosphorylation / drug effects; Plant Extracts; Populus / drug effects; Populus / enzymology; Propionates; Proteomics; Recombinant Fusion Proteins / metabolism; Sequence Homology, Amino Acid; Substrate Specificity / drug effects; Xylem / drug effects; Xylem / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa
Proceedings of the National Academy of Sciences, 110(26), 10848–10853.
MeSH headings : Base Sequence; Down-Regulation / genetics; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Gene Regulatory Networks; Genes, Plant; Laccase / antagonists & inhibitors; Laccase / genetics; Lignin / antagonists & inhibitors; Lignin / chemistry; Lignin / metabolism; MicroRNAs / genetics; MicroRNAs / metabolism; Phylogeny; Plant Proteins / genetics; Populus / enzymology; Populus / genetics; RNA, Plant / genetics; RNA, Plant / metabolism
Sources: Web Of Science, Crossref, ORCID
Added: August 6, 2018
2013 journal article
Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa
Planta, 238(3), 487–497.
MeSH headings : Gene Expression Regulation, Plant / physiology; Mass Spectrometry; Phenylalanine Ammonia-Lyase / metabolism; Populus / enzymology; Populus / metabolism
Sources: NC State University Libraries, ORCID
Added: August 6, 2018
2013 journal article
SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa
PLANT CELL, 25(11), 4324–4341.
MeSH headings : Algorithms; Cell Wall / genetics; Chromatin Immunoprecipitation; Gene Expression Regulation, Plant; Gene Ontology; Gene Regulatory Networks; High-Throughput Nucleotide Sequencing; Models, Genetic; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified; Polymerase Chain Reaction / methods; Populus / genetics; Populus / metabolism; Protoplasts; Reproducibility of Results; Transcription Factors / genetics; Transcription Factors / metabolism; Transfection; Wood / genetics; Wood / metabolism; Xylem / cytology; Xylem / genetics
Source: Web Of Science
Added: August 6, 2018
2013 journal article
The Amborella Genome and the Evolution of Flowering Plants
Science, 342(6165), 1456–1457.
MeSH headings : Conservation of Natural Resources; Contig Mapping; Evolution, Molecular; Flowers / genetics; Gene Duplication; Genetic Variation; Genome, Plant; Metagenomics / statistics & numerical data; Molecular Sequence Annotation; Multigene Family; New Caledonia; Phylogeny; Sequence Analysis, DNA; Tracheophyta / classification; Tracheophyta / genetics; Tracheophyta / growth & development
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
The elucidation of the lignin structure effect on the cellulase-mediated saccharification by genetic engineering poplars (Populus nigra L. x Populus maximowiczii A.)
BIOMASS & BIOENERGY, 58, 52–57.
author keywords: Transgenic hybrid poplar; Pretreatment; S to V Ratio; Delignification; Enzymatic saccharification
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments
JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829.
author keywords: design of experiments; proteolytic digestion; LC-MS/MS; Populus trichocarpa
MeSH headings : Amino Acid Sequence; Animals; Cattle; Chromatography, Liquid / standards; Factor Analysis, Statistical; Hydrogen-Ion Concentration; Isotope Labeling; Molecular Sequence Annotation; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / isolation & purification; Plant Proteins / chemistry; Plant Proteins / isolation & purification; Populus / chemistry; Protein Stability; Proteolysis; Proteomics / methods; Proteomics / standards; Research Design; Swine; Tandem Mass Spectrometry / standards; Trypsin / chemistry; Xylem / chemistry
Sources: Web Of Science, ORCID
Added: August 6, 2018
2012 journal article
A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities
PLANTA, 236(3), 879–885.
author keywords: Monolignols; Enzyme activity; Populus trichocarpa; Pinus taeda; Angiosperm; Gymnosperm
MeSH headings : Biosynthetic Pathways; Chromatography, High Pressure Liquid; Enzyme Assays; Lignin / biosynthesis; Methyltransferases / metabolism; Mixed Function Oxygenases / metabolism; Oxidoreductases / metabolism; Pinus taeda / enzymology; Plant Proteins / analysis; Plant Stems / enzymology; Populus / enzymology; Substrate Specificity; Xylem / enzymology
Source: Web Of Science
Added: August 6, 2018
2012 journal article
Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry
Journal of Proteome Research, 11(6), 3390–3404.
author keywords: quantification; isotope dilution mass spectrometry; selected reaction monitoring; filter-aided sample preparation; monolignol biosynthesis
MeSH headings : Amino Acid Sequence; Biosynthetic Pathways; Isotope Labeling; Molecular Sequence Data; Plant Proteins / chemistry; Plant Proteins / metabolism; Populus / enzymology; Proteome / chemistry; Proteome / metabolism; Reference Standards; Spectrometry, Mass, Electrospray Ionization / standards; Xylem / enzymology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2012 journal article
Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis
PLANTA, 236(3), 795–808.
author keywords: Lignin; Syringyl lignin; Angiosperm; Kinetics; Subcellular localization
MeSH headings : Cloning, Molecular; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Hydroxylation; Kinetics; Lignin / analysis; Lignin / biosynthesis; Mixed Function Oxygenases / metabolism; Plants, Genetically Modified; Populus / metabolism; Xylem / enzymology; Yeasts / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2012 journal article
MicroRNAs in trees
PLANT MOLECULAR BIOLOGY, 80(1), 37–53.
author keywords: MicroRNA; Woody plant; Gene regulation; Plant development; Plant stress response; Artificial microRNA
MeSH headings : Gene Expression Regulation, Plant; MicroRNAs / genetics; MicroRNAs / metabolism; Models, Genetic; Phylogeny; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / genetics; RNA, Plant / metabolism; Trees / classification; Trees / genetics; Trees / metabolism
Source: Web Of Science
Added: August 6, 2018
2012 journal article
Peptide Production and Decay Rates Affect the Quantitative Accuracy of Protein Cleavage Isotope Dilution Mass Spectrometry (PC-IDMS)
Molecular & Cellular Proteomics, 11(9), 814–823.
MeSH headings : Indicator Dilution Techniques; Isotope Labeling; Mass Spectrometry; Peptide Biosynthesis; Peptides / analysis; Peptides / chemistry; Peptides / metabolism; Populus / enzymology; Populus / metabolism; Proteolysis; Xylem / enzymology
Sources: Crossref, Web Of Science, ORCID
Added: August 6, 2018
2012 journal article
Raman-spectroscopy-based noninvasive microanalysis of native lignin structure
ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 402(2), 983–987.
author keywords: Lignin; Entropy minimization; Chemometrics; Cell wall; Monolignol; Raman
MeSH headings : Arabidopsis / chemistry; Lignin / analysis; Lignin / chemistry; Molecular Structure; Spectrum Analysis, Raman / methods
Source: Web Of Science
Added: August 6, 2018
2012 journal article
Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(36), 14699–14704.
MeSH headings : Blotting, Western; Cloning, Molecular; DNA Primers / genetics; Dimerization; Electrophoresis, Polyacrylamide Gel; Gene Regulatory Networks / genetics; Homeostasis / physiology; Models, Biological; Plasmids / genetics; Populus / genetics; Protein Isoforms / genetics; Protein Transport; Real-Time Polymerase Chain Reaction; Transcription Factors / genetics
Source: Web Of Science
Added: August 6, 2018
2012 journal article
The Cellulase-Mediated Saccharification on Wood Derived from Transgenic Low-Lignin Lines of Black Cottonwood (Populus trichocarpa)
APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 168(4), 947–955.
author keywords: Transgenic hardwood; Downregulated lignin; Pretreatment; Enzymatic saccharification
MeSH headings : Cellulase / metabolism; Down-Regulation; Hydrogen-Ion Concentration; Hydrolysis; Lignin / chemistry; Lignin / metabolism; Ozone / chemistry; Plants, Genetically Modified; Polysaccharides / chemistry; Populus / genetics; Populus / metabolism; Sulfuric Acids / chemistry; Wood / chemistry
Source: Web Of Science
Added: August 6, 2018
2012 conference paper
The effects of transgenic samples on the enzymatic saccharification
Proceeding of the 4th International Conference on Pulping, Papermaking and Biotechnology (ICPPB '12), vols. I and II, 1058–1062.
Source: NC State University Libraries
Added: August 6, 2018
2012 journal article
effect of lignin on enzymatic saccharification of hardwood after green liquor and sulfuric acid pretreatments
BioResources, 7(2), 2272–2283.
Source: NC State University Libraries
Added: August 6, 2018
2011 journal article
Chemical and Spatial Differentiation of Syringyl and Guaiacyl Lignins in Poplar Wood via Time-of-Flight Secondary Ion Mass Spectrometry
ANALYTICAL CHEMISTRY, 83(18), 7020–7026.
MeSH headings : Cell Wall / chemistry; Fullerenes / chemistry; Lignin / analysis; Plant Stems / chemistry; Populus / chemistry; Spectrometry, Mass, Secondary Ion / methods
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 article
Comparison of pretreatment protocols for cellulase-mediated saccharification of wood derived from transgenic low-xylan lines of cottonwood (P. trichocarpa)
Min, D., Li, Q., Jameel, H., Chiang, V., & Chang, H.-min. (2011, August). BIOMASS & BIOENERGY, Vol. 35, pp. 3514–3521.
author keywords: Transgenic tree; Low xylan content; Pretreatment; Enzymatic saccharification; Fermentable sugar
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Conservation and Diversity of MicroRNA-associated Copper-regulatory Networks in Populus trichocarpa
JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 53(11), 879–891.
author keywords: copper; Cu-response element; microRNA; Populus; SPB domain protein
MeSH headings : Copper / pharmacology; Gene Expression Regulation, Plant / drug effects; Gene Expression Regulation, Plant / genetics; MicroRNAs / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Populus / genetics; Populus / metabolism; Promoter Regions, Genetic / genetics
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa caused reduced mechanical strength and xylan content in wood
TREE PHYSIOLOGY, 31(2), 226–236.
author keywords: glycosyltransferase; Populus trichocarpa; wood formation; xylan
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Cell Wall / metabolism; Down-Regulation; Elastic Modulus; Gene Expression Regulation, Plant; Genes, Plant; Genetic Variation; Glycosyltransferases / genetics; Glycosyltransferases / metabolism; Plant Stems / chemistry; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Populus / genetics; Populus / metabolism; Stress, Mechanical; Transcription Factors; Wood / analysis; Xylans / biosynthesis; Xylans / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2011 journal article
Effects of lignin-modified Populus tremuloides on soil organic carbon
JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, 174(5), 818–826.
author keywords: C-13; carbon storage; soil C formation; transgenic aspen; lignin modifications
Source: Web Of Science
Added: August 6, 2018
2011 journal article
Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258.
MeSH headings : Carboxylic Ester Hydrolases / chemistry; Carboxylic Ester Hydrolases / metabolism; Chromatography, Liquid; Coumaric Acids; DNA Primers / genetics; Hydroxylation; Immunoprecipitation; Kinetics; Lignin / biosynthesis; Mass Spectrometry; Membrane Proteins / chemistry; Membrane Proteins / metabolism; Microscopy, Confocal; Molecular Structure; Multiprotein Complexes / chemistry; Multiprotein Complexes / metabolism; Phenols; Phenylpropionates; Plasmids / genetics; Populus / metabolism; Propionates; Trans-Cinnamate 4-Monooxygenase / chemistry; Trans-Cinnamate 4-Monooxygenase / metabolism; Xylem / metabolism; Yeasts
Sources: Web Of Science, ORCID
Added: August 6, 2018
2010 journal article
Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees
PLANT PHYSIOLOGY, 154(2), 555–561.
MeSH headings : Biomass; Gene Expression Regulation, Plant; Lignin / biosynthesis; Lignin / chemistry; Transcription Factors / metabolism; Trees / genetics; Trees / growth & development; Trees / metabolism; Wood / genetics; Wood / growth & development; Wood / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018
2010 journal article
Profiling of phenylpropanoid monomers in developing xylem tissue of transgenic aspen (Populus tremuloides)
JOURNAL OF WOOD SCIENCE, 56(1), 71–76.
author keywords: Aspen; Transgenic; 4-Coumarate:CoA ligase; Coniferaldehyde 5-hydroxylase; Metabolic profiling
Source: Web Of Science
Added: August 6, 2018
2010 journal article
Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa
PLANTA, 232(6), 1281–1288.
author keywords: Artificial microRNA; Phenylalanine ammonia-lyase; Populus trichocarpa transformation; Down-regulation; PolyA tailing-based real time RT-PCR; Quantitation
MeSH headings : Base Sequence; DNA Primers; Down-Regulation; Genes, Plant; MicroRNAs / physiology; Mutation; Populus / genetics; Reverse Transcriptase Polymerase Chain Reaction; Sequence Homology, Nucleic Acid
Source: Web Of Science
Added: August 6, 2018
2010 review
Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes
[Review of ]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163.
author keywords: Lignin systems biology; Monolignol biosynthesis; Populus trichocarpa; Promoter motifs; Transcript abundance; Xylem-specific expression
MeSH headings : Amino Acid Motifs / genetics; Biosynthetic Pathways / genetics; Enzymes / biosynthesis; Enzymes / genetics; Gene Expression Regulation, Enzymologic / physiology; Gene Expression Regulation, Plant / physiology; Genome, Plant / genetics; Lignin / biosynthesis; Lignin / genetics; Phloem / enzymology; Phloem / genetics; Plant Shoots / enzymology; Plant Shoots / genetics; Populus / genetics; Populus / metabolism; Promoter Regions, Genetic / genetics; RNA, Messenger / analysis; RNA, Messenger / genetics; RNA, Messenger / metabolism; RNA, Plant / analysis; RNA, Plant / genetics; RNA, Plant / metabolism; Transcription, Genetic / physiology; Xylem / enzymology; Xylem / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2009 journal article
Adenylation of plant miRNAs
NUCLEIC ACIDS RESEARCH, 37(6), 1878–1885.
MeSH headings : Adenosine Monophosphate / analysis; Genetic Variation; MicroRNAs / chemistry; MicroRNAs / metabolism; Populus / genetics; RNA 3' End Processing; RNA Stability; RNA, Plant / chemistry; RNA, Plant / metabolism; Sequence Analysis, RNA
Source: Web Of Science
Added: August 6, 2018
2009 review
An update on the nomenclature for the cellulose synthase genes in Populus
[Review of ]. TRENDS IN PLANT SCIENCE, 14(5), 248–254.
MeSH headings : Glucosyltransferases / genetics; Phylogeny; Plant Proteins / classification; Populus / enzymology; Terminology as Topic
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Characterization of the tissue-specific expression of phenylalanine ammonia-lyase gene promoter from loblolly pine (Pinus taeda) in Nicotiana tabacum
PLANT CELL REPORTS, 28(9), 1309–1317.
author keywords: PtaPAL; Lignin; Pinus taeda; AC element
MeSH headings : Base Sequence; DNA, Plant / genetics; Gene Expression Regulation, Plant; Genomic Library; Molecular Sequence Data; Phenylalanine Ammonia-Lyase / genetics; Pinus taeda / genetics; Plant Proteins / genetics; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Promoter Regions, Genetic; Tobacco / genetics; Tobacco / metabolism; Xylem / metabolism
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Isolation of 4-coumarate Co-A ligase gene promoter from loblolly pine (Pinus taeda) and characterization of tissue-specific activity in transgenic tobacco
PLANT PHYSIOLOGY AND BIOCHEMISTRY, 47(11-12), 1031–1036.
author keywords: Pta4CL alpha; Lignin; Pinus taeda; AC element
MeSH headings : Adaptation, Physiological / genetics; Base Sequence; Coenzyme A Ligases / genetics; Coenzyme A Ligases / metabolism; DNA, Plant; Gene Expression; Gene Expression Regulation, Plant; Gene Library; Genes, Plant; Molecular Sequence Data; Nuclear Proteins / metabolism; Pinus taeda / enzymology; Pinus taeda / genetics; Plant Stems / cytology; Plant Stems / genetics; Plants, Genetically Modified / genetics; Promoter Regions, Genetic / physiology; Sequence Homology, Nucleic Acid; Tobacco / genetics; Tobacco / metabolism; Xylem / enzymology; Xylem / genetics; Xylem / growth & development
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Label-free in situ imaging of lignification in the cell wall of low lignin transgenic Populus trichocarpa
PLANTA, 230(3), 589–597.
author keywords: Populus trichocarpa (black cottonwood); Cell wall; Lignin; Microspectroscopy; Raman imaging; Transgenic
MeSH headings : Cell Wall / metabolism; Lignin / metabolism; Plants, Genetically Modified / cytology; Plants, Genetically Modified / metabolism; Populus / cytology; Populus / metabolism; Spectrum Analysis, Raman
Source: Web Of Science
Added: August 6, 2018
2009 journal article
Phenolic compounds in ectomycorrhizal interaction of lignin modified silver birch
BMC PLANT BIOLOGY, 9.
MeSH headings : Betula / genetics; Betula / metabolism; Betula / microbiology; Gene Expression Regulation, Plant; Lignin / biosynthesis; Methyltransferases / genetics; Methyltransferases / metabolism; Mycorrhizae / physiology; Phenols / metabolism; Plant Roots / genetics; Plant Roots / metabolism; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Populus / genetics; RNA, Plant / genetics; Sequence Analysis, DNA; Symbiosis; Tannins / biosynthesis
Source: Web Of Science
Added: August 6, 2018
2008 journal article
A novel O-Methyltransferase-like gene with a drastic extopic expression in response to tension wood formation in Poupulus trichocarpa
Cellulose Chemistry and Technology, 41(9-10), 521–528.
Source: NC State University Libraries
Added: August 6, 2018
2008 article
Differential expression of three eucalyptus secondary cell wall-related cellulose synthase genes in response to tension stress
Lu, S., Li, L., Yi, X., Joshi, C. P., & Chiang, V. L. (2008, February). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 59, pp. 681–695.
author keywords: cellulose; cellulose synthase; cell wall; Eucalyptus grandis; tension stress; wood formation
MeSH headings : Adaptation, Physiological; Cell Wall / enzymology; Cloning, Molecular; DNA, Complementary; Eucalyptus / enzymology; Eucalyptus / genetics; Eucalyptus / physiology; Gene Expression Regulation, Plant; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Isoenzymes / genetics; Isoenzymes / metabolism; Promoter Regions, Genetic; Sequence Alignment; Sequence Homology, Nucleic Acid; Stress, Mechanical; Trees / enzymology; Trees / genetics; Trees / physiology; Wood / metabolism; Xylem / enzymology; Xylem / growth & development
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Paxillus involutus Forms an Ectomycorrhizal Symbiosis and Enhances Survival of PtCOMT-modified Betula pendula in vitro
SILVAE GENETICA, 57(4-5), 235–242.
author keywords: Betula pendula; COMT; ecological impacts of gmtrees; ectomycorrhiza; lignin modification; Paxillus involutus
Source: Web Of Science
Added: August 6, 2018
2008 journal article
Roles of 5-hydroxyconiferylaldehyde and caffeoyl CoA O-methyltransferases in monolignol biosynthesis in Carthamus tinctorius
Cellulose Chemistry and Technology, 41(9-10), 511–520.
Source: NC State University Libraries
Added: August 6, 2018
2008 journal article
Stress-responsive microRNAs in Populus
PLANT JOURNAL, 55(1), 131–151.
author keywords: microRNA; Populus trichocarpa; abiotic stress; cold stress; trees
MeSH headings : Base Sequence; Blotting, Northern; Cloning, Molecular; Cold Temperature; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Expression Regulation, Plant; Genes, Plant; Hot Temperature; MicroRNAs / metabolism; Molecular Sequence Data; Oligonucleotide Array Sequence Analysis; Populus / genetics; Populus / physiology; Salinity; Stress, Mechanical; Water / physiology
Source: Web Of Science
Added: August 6, 2018
2007 review
MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development
[Review of ]. PLANT JOURNAL, 51(6), 1077–1098.
author keywords: microRNA; Pinus taeda L.; Cronartium quercuum f. sp fusiforme; fusiform rust gall; non-protein coding transcript; ta-siRNA
MeSH headings : Base Sequence; Basidiomycota / physiology; Cloning, Molecular; Conserved Sequence; Genomics; MicroRNAs / chemistry; MicroRNAs / metabolism; MicroRNAs / physiology; Molecular Sequence Data; Pinus taeda / genetics; Pinus taeda / microbiology; Plant Diseases / genetics; Polymerase Chain Reaction; Sequence Analysis, RNA; Xylem / genetics
Source: Web Of Science
Added: August 6, 2018
2007 conference paper
Microwave pretreatment of switchgrass to enhance enzymatic hydrolysis
Proceedings of the ASABE Annual International Meeting (Minneapolis, Minnesota), 077127.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Plant growth, biomass partitioning and soil carbon formation in response to altered lignin biosynthesis in Populus tremuloides
NEW PHYTOLOGIST, 173(4), 732–742.
author keywords: carbon cycling; leaf area; lignin; photosynthesis; plant production; Populus; tissue quality; transgenic aspen
MeSH headings : Biomass; Carbon / metabolism; Carbon Isotopes / metabolism; Lignin / biosynthesis; Nitrogen / metabolism; Photosynthesis; Plant Leaves / growth & development; Plant Leaves / metabolism; Plant Stems / metabolism; Plants, Genetically Modified; Populus / growth & development; Populus / metabolism; Soil; Soil Microbiology; Trees
Source: Web Of Science
Added: August 6, 2018
2007 journal article
The seasonal activity and the effect of mechanical bending and wounding on the PtCOMT promoter in Betula pendula Roth
PLANT CELL REPORTS, 26(8), 1205–1214.
author keywords: Betula pendula; COMT; expression pattern; GUS; promoter
MeSH headings : Betula / genetics; Betula / metabolism; Gene Expression Regulation, Plant; Plant Roots / genetics; Plant Roots / metabolism; Plant Stems / anatomy & histology; Plant Stems / genetics; Plant Stems / metabolism; Plants, Genetically Modified; Promoter Regions, Genetic / genetics; Seasons; Stress, Mechanical
Source: Web Of Science
Added: August 6, 2018
2006 review
A genomic and molecular view of wood formation
[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 25(3), 215–233.
author keywords: secondary growth; wood formation; xylem differentiation; lignin; cellulose; hemicellulose; cambium meristem; cell wall
Source: Web Of Science
Added: August 6, 2018
2006 journal article
Distinct roles of cinnamate 4-hydroxylase genes in Populus
PLANT AND CELL PHYSIOLOGY, 47(7), 905–914.
author keywords: cinnamate 4-hydroxylase (C4H); lignin; phenylpropanoid; Populus tremuloides; Populus trichocarpa
MeSH headings : DNA, Plant / genetics; Gene Expression Regulation, Enzymologic / genetics; Gene Expression Regulation, Plant / genetics; Genes, Plant / genetics; Genes, Plant / physiology; Isoenzymes / genetics; Isoenzymes / physiology; Lignin / biosynthesis; Molecular Sequence Data; Populus / enzymology; Populus / genetics; Reverse Transcriptase Polymerase Chain Reaction; Trans-Cinnamate 4-Monooxygenase / genetics; Trans-Cinnamate 4-Monooxygenase / metabolism
Source: Web Of Science
Added: August 6, 2018
2006 journal article
Genetic transformation of Populus trichocarpa genotype Nisqually-1: A functional genomic tool for woody plants
PLANT AND CELL PHYSIOLOGY, 47(11), 1582–1589.
author keywords: Agrobacterium tumefaciens; black cottonwood; functional genomics; genetic transformation; Nisqually-1; Populus trichocarpa
MeSH headings : Agrobacterium tumefaciens; Genome, Plant / genetics; Genomics / methods; Genotype; Glucuronidase / metabolism; Plants, Genetically Modified; Populus / genetics; Populus / microbiology; Populus / physiology; Regeneration; Transformation, Genetic; Wood / genetics; Wood / microbiology; Wood / physiology
Source: Web Of Science
Added: August 6, 2018
2006 article
Monolignol biosynthesis and genetic engineering of lignin in trees, a review
Chiang, V. L. (2006, August). ENVIRONMENTAL CHEMISTRY LETTERS, Vol. 4, pp. 143–146.
Source: Web Of Science
Added: August 6, 2018
2006 journal article
Rapid analysis of transgenic trees using transmittance near-infrared spectroscopy (NIR)
HOLZFORSCHUNG, 60(1), 24–28.
author keywords: cellulose; lignin; near-infrared spectroscopy (NIR); S/G ratio; transgenic tree; transmittance; xylose
Source: Web Of Science
Added: August 6, 2018
2006 journal article
The cellulose synthase gene superfamily and biochemical functions of xylem-specific cellulose synthase-like genes in Populus trichocarpa
PLANT PHYSIOLOGY, 142(3), 1233–1245.
MeSH headings : Animals; Cell Line; Cloning, Molecular; Drosophila / cytology; Gene Expression Profiling; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; Genome, Plant; Glucosyltransferases / genetics; Glucosyltransferases / metabolism; Multigene Family; Phylogeny; Populus / enzymology; Xylem / enzymology
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Clarification of cinnamoyl co-enzyme a reductase catalysis in monolignol biosynthesis of aspen
PLANT AND CELL PHYSIOLOGY, 46(7), 1073–1082.
author keywords: cinnamoyl co-enzyme A reductase (CCR); lignin; monolignol biosynthesis; xylem
MeSH headings : Acyl Coenzyme A / chemistry; Acyl Coenzyme A / metabolism; Aldehyde Oxidoreductases / genetics; Aldehyde Oxidoreductases / isolation & purification; Aldehyde Oxidoreductases / metabolism; Catalysis; Chromatography, High Pressure Liquid; Cloning, Molecular; Esters / chemistry; Esters / metabolism; Gene Expression Profiling; Gene Expression Regulation, Plant; Genome, Plant; Hydrogen-Ion Concentration; Kinetics; Lignin / biosynthesis; Mass Spectrometry; Molecular Sequence Data; Populus / classification; Populus / enzymology; Populus / genetics; Populus / metabolism; Sequence Homology, Nucleic Acid; Substrate Specificity
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Does lignin modification affect feeding preference or growth performance of insect herbivores in transgenic silver birch (Betula pendula Roth)?
PLANTA, 222(4), 699–708.
author keywords: Betula; insect herbivores; lignin modification; O-methyltransferase; syringyl/guaiacyl ratio
MeSH headings : Animals; Betula / genetics; Betula / metabolism; Coleoptera / growth & development; Coleoptera / physiology; Feeding Behavior; Genes, Plant; Insecta / growth & development; Insecta / physiology; Lepidoptera / growth & development; Lepidoptera / physiology; Lignin / metabolism; Plant Leaves / anatomy & histology; Plants, Genetically Modified / metabolism
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Facile means for quantifying microRNA expression by real-time PCR
BIOTECHNIQUES, 39(4), 519–525.
MeSH headings : Arabidopsis / genetics; Base Sequence; Benzothiazoles; Blotting, Northern; DNA Primers / chemistry; DNA, Complementary / metabolism; Diamines; Fluorescent Dyes / pharmacology; Genes, Plant / genetics; MicroRNAs / analysis; Molecular Sequence Data; Organic Chemicals / pharmacology; Plant Leaves / metabolism; Plant Stems / metabolism; Polymerase Chain Reaction; Quinolines; RNA / metabolism; Reverse Transcriptase Polymerase Chain Reaction / methods; Sensitivity and Specificity; Temperature; Tissue Distribution; Transcription, Genetic
Source: Web Of Science
Added: August 6, 2018
2005 patent
Methods for simultaneous control of lignin content and composition, and cellulose content in plants
Washington, DC: U.S. Patent and Trademark Office.
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis
Plant Cell, 17(8), 2186–2203.
MeSH headings : Arabidopsis / genetics; Base Sequence; Conserved Sequence; Gene Expression Regulation, Plant; MicroRNAs / chemistry; MicroRNAs / genetics; Molecular Sequence Data; Plant Stems / genetics; Populus / genetics; RNA, Plant / genetics; Species Specificity; Transcription, Genetic
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
Rapid screening of wood chemical component variations using transmittance near-infrared spectroscopy
JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 53(9), 3328–3332.
author keywords: Loblolly pine (Pinus taeda); aspen (Populus trichocarpa); transmittance near-infrared spectroscopy (NIR); increment cores; wood wafer; alpha-cellulose content; lignin content; screening
MeSH headings : Cellulose / analysis; Lignin / analysis; Pinus taeda / chemistry; Populus / chemistry; Spectroscopy, Near-Infrared / methods; Wood
Source: Web Of Science
Added: August 6, 2018
2004 patent
Genetic engineering of syringyl-enriched lignin in plants
Washington, DC: U.S. Patent and Trademark Office.
Source: NC State University Libraries
Added: August 6, 2018
2004 journal article
RNA silencing in plants by the expression of siRNA duplexes
NUCLEIC ACIDS RESEARCH, 32(21).
MeSH headings : Gene Expression Regulation, Plant; Genetic Vectors; Glucuronidase / analysis; Glucuronidase / genetics; Humans; Molecular Sequence Data; Promoter Regions, Genetic; RNA / genetics; RNA Interference; RNA, Small Cytoplasmic / genetics; RNA, Small Interfering / biosynthesis; RNA, Small Interfering / chemistry; RNA, Small Interfering / genetics; Signal Recognition Particle / genetics; Tobacco / genetics; Tobacco / metabolism
Source: Web Of Science
Added: August 6, 2018
2003 journal article
Combinatorial modification of multiple lignin traits in trees through multigene cotransformation
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(8), 4939–4944.
MeSH headings : Base Sequence; Coenzyme A Ligases / genetics; Cytochrome P-450 Enzyme System / genetics; DNA, Plant / genetics; Genes, Plant; Immunohistochemistry; Lignin / chemistry; Lignin / metabolism; Magnetic Resonance Spectroscopy; Mixed Function Oxygenases / genetics; Models, Biological; Plant Proteins; Plants, Genetically Modified; Populus / genetics; Populus / metabolism; Rhizobium / genetics; Transformation, Genetic
Source: Web Of Science
Added: August 6, 2018
2002 journal article
Differential substrate inhibition couples kinetically distinct 4-coumarate: Coenzyme A ligases with spatially distinct metabolic roles in quaking aspen
Plant Physiology, 128(2002), 428–438.
MeSH headings : Acyl Coenzyme A / metabolism; Caffeic Acids / metabolism; Cloning, Molecular; Coenzyme A Ligases / genetics; Coenzyme A Ligases / metabolism; Coumaric Acids / metabolism; Flavonoids / biosynthesis; Flavonoids / chemistry; Gene Expression Regulation, Enzymologic; Gene Expression Regulation, Plant; In Situ Hybridization; Isoenzymes / genetics; Isoenzymes / metabolism; Kinetics; Lignin / biosynthesis; Lignin / chemistry; Pinus / enzymology; Pinus / genetics; Plant Stems / cytology; Plant Stems / enzymology; Plant Stems / genetics; Promoter Regions, Genetic; Recombinant Proteins / metabolism; Salicaceae / enzymology; Salicaceae / genetics
Source: NC State University Libraries
Added: August 6, 2018
2002 journal article
From rags to riches
NATURE BIOTECHNOLOGY, 20(6), 557–558.
MeSH headings : Ecosystem; Environmental Pollution; Industrial Waste / prevention & control; Lignin / genetics; Lignin / metabolism; Models, Chemical; Paper; Plants, Genetically Modified; Trees / genetics; Trees / metabolism; Wood
Source: Web Of Science
Added: August 6, 2018
2002 patent
Methods of modifying lignin in plants by transformation with a 4-coumarate coenzyme a ligase nucleic acid
Washington, DC: U.S. Patent and Trademark Office.
Source: NC State University Libraries
Added: August 6, 2018
1999 patent
Genetic engineering of wood color in plants
Washington, DC: U.S. Patent and Trademark Office.
Source: NC State University Libraries
Added: August 6, 2018
