Vincent L Chiang

Cell-type-specific PtrWOX4a and PtrVCS2 form a regulatory nexus with a histone modification system for stem cambium development in Populus trichocarpa

Dai, X., Zhai, R., Lin, J., Wang, Z., Meng, D., Li, M., … Li, W. (2023, January 9). NATURE PLANTS.

Dimerization of PtrMYB074 and PtrWRKY19 mediates transcriptional activation of PtrbHLH186 for secondary xylem development in Populus trichocarpa

Liu, H., Gao, J., Sun, J., Li, S., Zhang, B., Wang, Z., … Li, W. (2022, March 3). NEW PHYTOLOGIST.

The Manchurian Walnut Genome: Insights into Juglone and Lipid Biosynthesis

GIGASCIENCE, 11.

p A PtrLBD39-mediated transcriptional network regulates tension wood formation in Populus trichocarpa

PLANT COMMUNICATIONS, 3(1).

A multiscale model of lignin biosynthesis for predicting bioenergy traits in Populus trichocarpa

COMPUTATIONAL AND STRUCTURAL BIOTECHNOLOGY JOURNAL, 19, 168–182.

An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use

[Review of ]. HORTICULTURAE, 7(8).

CRISPR-Cas9 editing of CAFFEOYL SHIKIMATE ESTERASE 1 and 2 shows their importance and partial redundancy in lignification in Populus tremula x P. alba

Vries, L., Brouckaert, M., Chanoca, A., Kim, H., Regner, M. R., Timokhin, V. I., … Boerjan, W. (2021, August 6). PLANT BIOTECHNOLOGY JOURNAL.

Cooperative Regulation of Flavonoid and Lignin Biosynthesis in Plants

[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 40(2), 109–126.

Enzyme Complexes of Ptr4CL and PtrHCT Modulate Co-enzyme A Ligation of Hydroxycinnamic Acids for Monolignol Biosynthesis in Populus trichocarpa

FRONTIERS IN PLANT SCIENCE, 12.

Histone Acetylation Changes in Plant Response to Drought Stress

[Review of ]. GENES, 12(9).

MYB-Mediated Regulation of Anthocyanin Biosynthesis

[Review of ]. INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(6).

Molecular and Metabolic Insights into Anthocyanin Biosynthesis for Leaf Color Change in Chokecherry (Padus virginiana)

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 22(19).

Qu-2, a robust poplar suspension cell line for molecular biology

JOURNAL OF FORESTRY RESEARCH, 32(2), 733–740.

Transcriptional reprogramming of xylem cell wall biosynthesis in tension wood

PLANT PHYSIOLOGY, 186(1), 250–269.

Fungal Pretreatment and Enzymatic Hydrolysis of Genetically-modified Populus trichocarpa

BIORESOURCES, 15(3), 6488–6505.

Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease

[Review of ]. FRONTIERS IN MICROBIOLOGY, 11.

Use of the lignocellulose-degrading bacterium Caldicellulosiruptor bescii to assess recalcitrance and conversion of wild-type and transgenic poplar

BIOTECHNOLOGY FOR BIOFUELS, 13(1).

A novel synthetic-genetic-array-based yeast one-hybrid system for high discovery rate and short processing time

GENOME RESEARCH, 29(8), 1343–1351.

ANATOMICAL, PHYSICAL, AND MECHANICAL PROPERTIES OF TRANSGENIC LOBLOLLY PINE (PINUS TAEDA L.) MODIFIED FOR INCREASED DENSITY

WOOD AND FIBER SCIENCE, 51(2), 173–182.

Anatomy and Chemistry of Populus trichocarpa with Genetically Modified Lignin Content

BIORESOURCES, 14(3), 5729–5746.

CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa

NEW PHYTOLOGIST, 222(1), 244–260.

Certification for gene-edited forests

Strauss, S. H., Boerjan, W., Chiang, V., Costanza, A., Coleman, H., Davis, J. M., … Valenzuela, S. (2019, August 23).

Enzyme-Enzyme Interactions in Monolignol Biosynthesis

[Review of ]. FRONTIERS IN PLANT SCIENCE, 9.

Flux modeling for monolignol biosynthesis

Current Opinion in Biotechnology, 56, 187–192.

Quantitative fermentation of unpretreated transgenic poplar by Caldicellulosiruptor bescii

NATURE COMMUNICATIONS, 10(1).

Thermo-mechanical Behavior of Genetically Modified Populus trichocarpa

BIORESOURCES, 14(2), 4760–4773.

Altered Lignin Content and Composition in Transgenic Populus trichocarpa Results in a Decrease of Modulus of Elasticity

BIORESOURCES, 13(4), 7698–7708.

Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis

PLOS ONE, 13(3), e0193896.

Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis

Nature Communications, 9(1), 1579.

Characterization and enzymatic hydrolysis of wood from transgenic Pinus taeda engineered with syringyl lignin or reduced lignin content

CELLULOSE, 24(4), 1901–1914.

Field-Grown Transgenic Hybrid Poplar with Modified Lignin Biosynthesis to Improve Enzymatic Saccharification Efficiency

ACS SUSTAINABLE CHEMISTRY & ENGINEERING, 5(3), 2407–2414.

Reciprocal cross-regulation of VND and SND multigene TF families for wood formation in Populus trichocarpa

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(45), E9722–E9729.

Takayoshi Higuchi (1927–2017)

Journal of Wood Chemistry and Technology, 37(5), 405–406.

Tissue and cell-type co-expression networks of transcription factors and wood component genes in Populus trichocarpa

PLANTA, 245(5), 927–938.

A cell wall-bound anionic peroxidase, PtrPO21, is involved in lignin polymerization in Populus trichocarpa

Tree Genetics & Genomes, 12(2).

Bottom-up GGM algorithm for constructing multilayered hierarchical gene regulatory networks that govern biological pathways or processes

BMC BIOINFORMATICS, 17.

4-Coumaroyl and Caffeoyl Shikimic Acids Inhibit 4-Coumaric Acid: Coenzyme A Ligases and Modulate Metabolic Flux for 3-Hydroxylation in Monolignol Biosynthesis of Populus trichocarpa

MOLECULAR PLANT, 8(1), 176–187.

Elucidation of Xylem-Specific Transcription Factors and Absolute Quantification of Enzymes Regulating Cellulose Biosynthesis in Populus trichocarpa

JOURNAL OF PROTEOME RESEARCH, 14(10), 4158–4168.

Phosphorylation is an on/off switch for 5-hydroxyconiferaldehyde O-methyltransferase activity in poplar monolignol biosynthesis

Proceedings of the National Academy of Sciences, 112(27), 8481–8486.

Populus trichocarpa

AGROBACTERIUM PROTOCOLS, VOLUME 2, THIRD EDITION, Vol. 1224, pp. 357–363.

Wood characteristics and enzymatic saccharification efficiency of field-grown transgenic black cottonwood with altered lignin content and structure

CELLULOSE, 22(1), 683–693.

A new O-methyltransferase for monolignol synthesis in Carthamus tinctorius

Plant Biotechnology, 31(5), 545–553.

A robust chromatin immunoprecipitation protocol for studying transcription factor-DNA interactions and histone modifications in wood-forming tissue

NATURE PROTOCOLS, 9(9), 2180–2193.

A simple improved-throughput xylem protoplast system for studying wood formation

NATURE PROTOCOLS, 9(9), 2194–2205.

Establishing ion ratio thresholds based on absolute peak area for absolute protein quantification using protein cleavage isotope dilution mass spectrometry

ANALYST, 139(21), 5439–5450.

Improved Protocol for Alkaline Nitrobenzene Oxidation of Woody and Non-Woody Biomass

Journal of Wood Chemistry and Technology, 35(1), 52–61.

Phenolic Compounds and Expression of 4CL Genes in Silver Birch Clones and Pt4CL1a Lines

PLOS ONE, 9(12).

Pop's Pipes: poplar gene expression data analysis pipelines

TREE GENETICS & GENOMES, 10(4), 1093–1101.

Systems Biology of Lignin Biosynthesis in Populus trichocarpa: Heteromeric 4-Coumaric Acid:Coenzyme A Ligase Protein Complex Formation, Regulation, and Numerical Modeling

The Plant Cell, 26(3), 876–893.

The influence of lignin-carbohydrate complexes on the cellulase-mediated saccharification II: Transgenic hybrid poplars (Populus nigra L. and Populus maximowiczii A.)

FUEL, 116, 56–62.

Vibrational sum-frequency-generation (SFG) spectroscopy study of the structural assembly of cellulose microfibrils in reaction woods

CELLULOSE, 21(4), 2219–2231.

nnThe influence of lignin-carbohydrate complexes on the cellulase-mediated saccharification I: Transgenic black cottonwood (western balsam poplar, California poplar) P-trichocarpa including the xylan down-regulated and the lignin down-regulated lines

FUEL, 119, 207–213.

A lignan O-methyltransferase catalyzing the regioselective methylation of matairesinol in Carthamus tinctorius

PLANT BIOTECHNOLOGY, 30(2), 97–109.

High-level gene expression in differentiating xylem of tobacco driven by a 2.0 kb Poplar COMT2 promoter and a 4 x 35S enhancer

PLANT BIOTECHNOLOGY, 30(2), 191–198.

Monolignol Pathway 4-Coumaric Acid: Coenzyme A Ligases in Populus trichocarpa: Novel Specificity, Metabolic Regulation, and Simulation of Coenzyme A Ligation Fluxes

PLANT PHYSIOLOGY, 161(3), 1501–1516.

Ptr-miR397a is a negative regulator of laccase genes affecting lignin content in Populus trichocarpa

Proceedings of the National Academy of Sciences, 110(26), 10848–10853.

Regulation of phenylalanine ammonia-lyase (PAL) gene family in wood forming tissue of Populus trichocarpa

Planta, 238(3), 487–497.

SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa

PLANT CELL, 25(11), 4324–4341.

The Amborella Genome and the Evolution of Flowering Plants

Science, 342(6165), 1456–1457.

The elucidation of the lignin structure effect on the cellulase-mediated saccharification by genetic engineering poplars (Populus nigra L. x Populus maximowiczii A.)

BIOMASS & BIOENERGY, 58, 52–57.

Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments

JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829.

A standard reaction condition and a single HPLC separation system are sufficient for estimation of monolignol biosynthetic pathway enzyme activities

PLANTA, 236(3), 879–885.

Comprehensive Quantification of Monolignol-Pathway Enzymes in Populus trichocarpa by Protein Cleavage Isotope Dilution Mass Spectrometry

Journal of Proteome Research, 11(6), 3390–3404.

Functional redundancy of the two 5-hydroxylases in monolignol biosynthesis of Populus trichocarpa: LC-MS/MS based protein quantification and metabolic flux analysis

PLANTA, 236(3), 795–808.

MicroRNAs in trees

PLANT MOLECULAR BIOLOGY, 80(1), 37–53.

Peptide Production and Decay Rates Affect the Quantitative Accuracy of Protein Cleavage Isotope Dilution Mass Spectrometry (PC-IDMS)

Molecular & Cellular Proteomics, 11(9), 814–823.

Raman-spectroscopy-based noninvasive microanalysis of native lignin structure

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 402(2), 983–987.

Splice variant of the SND1 transcription factor is a dominant negative of SND1 members and their regulation in Populus trichocarpa

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(36), 14699–14704.

The Cellulase-Mediated Saccharification on Wood Derived from Transgenic Low-Lignin Lines of Black Cottonwood (Populus trichocarpa)

APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 168(4), 947–955.

The effects of transgenic samples on the enzymatic saccharification

Proceeding of the 4th International Conference on Pulping, Papermaking and Biotechnology (ICPPB '12), vols. I and II, 1058–1062.

effect of lignin on enzymatic saccharification of hardwood after green liquor and sulfuric acid pretreatments

BioResources, 7(2), 2272–2283.

Chemical and Spatial Differentiation of Syringyl and Guaiacyl Lignins in Poplar Wood via Time-of-Flight Secondary Ion Mass Spectrometry

ANALYTICAL CHEMISTRY, 83(18), 7020–7026.

Comparison of pretreatment protocols for cellulase-mediated saccharification of wood derived from transgenic low-xylan lines of cottonwood (P. trichocarpa)

Min, D., Li, Q., Jameel, H., Chiang, V., & Chang, H.-min. (2011, August). BIOMASS & BIOENERGY, Vol. 35, pp. 3514–3521.

Conservation and Diversity of MicroRNA-associated Copper-regulatory Networks in Populus trichocarpa

JOURNAL OF INTEGRATIVE PLANT BIOLOGY, 53(11), 879–891.

Down-regulation of glycosyltransferase 8D genes in Populus trichocarpa caused reduced mechanical strength and xylan content in wood

TREE PHYSIOLOGY, 31(2), 226–236.

Effects of lignin-modified Populus tremuloides on soil organic carbon

JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE, 174(5), 818–826.

Membrane protein complexes catalyze both 4-and 3-hydroxylation of cinnamic acid derivatives in monolignol biosynthesis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 108(52), 21253–21258.

Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees

PLANT PHYSIOLOGY, 154(2), 555–561.

Profiling of phenylpropanoid monomers in developing xylem tissue of transgenic aspen (Populus tremuloides)

JOURNAL OF WOOD SCIENCE, 56(1), 71–76.

Specific down-regulation of PAL genes by artificial microRNAs in Populus trichocarpa

PLANTA, 232(6), 1281–1288.

Towards a Systems Approach for Lignin Biosynthesis in Populus trichocarpa: Transcript Abundance and Specificity of the Monolignol Biosynthetic Genes

[Review of ]. PLANT AND CELL PHYSIOLOGY, 51(1), 144–163.

Adenylation of plant miRNAs

NUCLEIC ACIDS RESEARCH, 37(6), 1878–1885.

An update on the nomenclature for the cellulose synthase genes in Populus

[Review of ]. TRENDS IN PLANT SCIENCE, 14(5), 248–254.

Characterization of the tissue-specific expression of phenylalanine ammonia-lyase gene promoter from loblolly pine (Pinus taeda) in Nicotiana tabacum

PLANT CELL REPORTS, 28(9), 1309–1317.

Isolation of 4-coumarate Co-A ligase gene promoter from loblolly pine (Pinus taeda) and characterization of tissue-specific activity in transgenic tobacco

PLANT PHYSIOLOGY AND BIOCHEMISTRY, 47(11-12), 1031–1036.

Label-free in situ imaging of lignification in the cell wall of low lignin transgenic Populus trichocarpa

PLANTA, 230(3), 589–597.

Phenolic compounds in ectomycorrhizal interaction of lignin modified silver birch

BMC PLANT BIOLOGY, 9.

A novel O-Methyltransferase-like gene with a drastic extopic expression in response to tension wood formation in Poupulus trichocarpa

Cellulose Chemistry and Technology, 41(9-10), 521–528.

Differential expression of three eucalyptus secondary cell wall-related cellulose synthase genes in response to tension stress

Lu, S., Li, L., Yi, X., Joshi, C. P., & Chiang, V. L. (2008, February). JOURNAL OF EXPERIMENTAL BOTANY, Vol. 59, pp. 681–695.

Paxillus involutus Forms an Ectomycorrhizal Symbiosis and Enhances Survival of PtCOMT-modified Betula pendula in vitro

SILVAE GENETICA, 57(4-5), 235–242.

Roles of 5-hydroxyconiferylaldehyde and caffeoyl CoA O-methyltransferases in monolignol biosynthesis in Carthamus tinctorius

Cellulose Chemistry and Technology, 41(9-10), 511–520.

Stress-responsive microRNAs in Populus

PLANT JOURNAL, 55(1), 131–151.

MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development

[Review of ]. PLANT JOURNAL, 51(6), 1077–1098.

Microwave pretreatment of switchgrass to enhance enzymatic hydrolysis

Proceedings of the ASABE Annual International Meeting (Minneapolis, Minnesota), 077127.

Plant growth, biomass partitioning and soil carbon formation in response to altered lignin biosynthesis in Populus tremuloides

NEW PHYTOLOGIST, 173(4), 732–742.

The seasonal activity and the effect of mechanical bending and wounding on the PtCOMT promoter in Betula pendula Roth

PLANT CELL REPORTS, 26(8), 1205–1214.

A genomic and molecular view of wood formation

[Review of ]. CRITICAL REVIEWS IN PLANT SCIENCES, 25(3), 215–233.

Distinct roles of cinnamate 4-hydroxylase genes in Populus

PLANT AND CELL PHYSIOLOGY, 47(7), 905–914.

Genetic transformation of Populus trichocarpa genotype Nisqually-1: A functional genomic tool for woody plants

PLANT AND CELL PHYSIOLOGY, 47(11), 1582–1589.

Monolignol biosynthesis and genetic engineering of lignin in trees, a review

Chiang, V. L. (2006, August). ENVIRONMENTAL CHEMISTRY LETTERS, Vol. 4, pp. 143–146.

Rapid analysis of transgenic trees using transmittance near-infrared spectroscopy (NIR)

HOLZFORSCHUNG, 60(1), 24–28.

The cellulose synthase gene superfamily and biochemical functions of xylem-specific cellulose synthase-like genes in Populus trichocarpa

PLANT PHYSIOLOGY, 142(3), 1233–1245.

Clarification of cinnamoyl co-enzyme a reductase catalysis in monolignol biosynthesis of aspen

PLANT AND CELL PHYSIOLOGY, 46(7), 1073–1082.

Does lignin modification affect feeding preference or growth performance of insect herbivores in transgenic silver birch (Betula pendula Roth)?

PLANTA, 222(4), 699–708.

Facile means for quantifying microRNA expression by real-time PCR

BIOTECHNIQUES, 39(4), 519–525.

Methods for simultaneous control of lignin content and composition, and cellulose content in plants

Washington, DC: U.S. Patent and Trademark Office.

Novel and mechanical stress-responsive microRNAs in Populus trichocarpa that are absent from Arabidopsis

Plant Cell, 17(8), 2186–2203.

Rapid screening of wood chemical component variations using transmittance near-infrared spectroscopy

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 53(9), 3328–3332.

Genetic engineering of syringyl-enriched lignin in plants

Washington, DC: U.S. Patent and Trademark Office.

RNA silencing in plants by the expression of siRNA duplexes

NUCLEIC ACIDS RESEARCH, 32(21).

Combinatorial modification of multiple lignin traits in trees through multigene cotransformation

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 100(8), 4939–4944.

Differential substrate inhibition couples kinetically distinct 4-coumarate: Coenzyme A ligases with spatially distinct metabolic roles in quaking aspen

Plant Physiology, 128(2002), 428–438.

From rags to riches

NATURE BIOTECHNOLOGY, 20(6), 557–558.

Methods of modifying lignin in plants by transformation with a 4-coumarate coenzyme a ligase nucleic acid

Washington, DC: U.S. Patent and Trademark Office.

Genetic engineering of wood color in plants

Washington, DC: U.S. Patent and Trademark Office.