Wei Shi Hu, J., Miller, G., & Shi, W. (2023). Abundance, diversity, and composition of root-associated microbial communities varied with tall fescue cultivars under water deficit. FRONTIERS IN MICROBIOLOGY, 13. https://doi.org/10.3389/fmicb.2022.1078836 Zhou, W., Shi, W., Soltis, P. S., Soltis, D. E., & Xiang, Q.-Y. (2023). Foliar endophyte diversity in Eastern Asian-Eastern North American disjunct tree species - influences of host identity, environment, phylogeny, and geographic isolation. FRONTIERS IN PLANT SCIENCE, 14. https://doi.org/10.3389/fpls.2023.1274746 Huang, Y., Shi, W., Fu, Q., Qiu, Y., Zhao, J., Li, J., … Chen, H. (2023). Soil development following glacier retreat shapes metagenomic and metabolomic functioning associated with asynchronous C and N accumulation. SCIENCE OF THE TOTAL ENVIRONMENT, 892. https://doi.org/10.1016/j.scitotenv.2023.164405 Xia, Q., Heitman, J. L., & Shi, W. (2023). Soil macroporosity modulates the extent of negative microbial associations during organic substance decomposition. SOIL BIOLOGY & BIOCHEMISTRY, 187. https://doi.org/10.1016/j.soilbio.2023.109202 Hu, J., Cyle, K. T., Miller, G., & Shi, W. (2023). Water deficits shape the microbiome of Bermudagrass roots to be Actinobacteria rich. FEMS MICROBIOLOGY ECOLOGY, 99(5). https://doi.org/10.1093/femsec/fiad036 Ramotowski, D., & Shi, W. (2022). Nitrapyrin-based nitrification inhibitors shaped the soil microbial community via controls on soil pH and inorganic N composition. APPLIED SOIL ECOLOGY, 170. https://doi.org/10.1016/j.apsoil.2021.104295 Xia, Q., Zheng, N., Heitman, J. L., & Shi, W. (2022). Soil pore size distribution shaped not only compositions but also networks of the soil microbial community. APPLIED SOIL ECOLOGY, 170. https://doi.org/10.1016/j.apsoil.2021.104273 Xia, Q., Rufty, T., & Shi, W. (2021). Predominant Microbial Colonizers in the Root Endosphere and Rhizosphere of Turfgrass Systems: Pseudomonas veronii, Janthinobacterium lividum, and Pseudogymnoascus spp. FRONTIERS IN MICROBIOLOGY, 12. https://doi.org/10.3389/fmicb.2021.643904 Xiao, R., Qiu, Y., Tao, J., Zhang, X., Chen, H., Reberg-Horton, S. C., … Hu, S. (2020). Biological controls over the abundances of terrestrial ammonia oxidizers. GLOBAL ECOLOGY AND BIOGEOGRAPHY, 29(2), 384–399. https://doi.org/10.1111/geb.13030 Xia, Q., Rufty, T., & Shi, W. (2020). Soil microbial diversity and composition: Links to soil texture and associated properties. SOIL BIOLOGY & BIOCHEMISTRY, 149. https://doi.org/10.1016/j.soilbio.2020.107953 Zheng, N., Yu, Y., Shi, W., & Yao, H. (2019). Biochar suppresses N2O emissions and alters microbial communities in an acidic tea soil. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH, 26(35), 35978–35987. https://doi.org/10.1007/s11356-019-06704-8 Xia, Q., Chen, H., Yang, T., Miller, G., & Shi, W. (2019). Defoliation management and grass growth habits modulated the soil microbial community of turfgrass systems. PLOS ONE, 14(6). https://doi.org/10.1371/journal.pone.0218967 Cacho, J. F., Youssef, M. A., Shi, W., Chescheir, G. M., Skaggs, R. W., Tian, S., … Arellano, C. (2019). Impacts on soil nitrogen availability of converting managed pine plantation into switchgrass monoculture for bioenergy. SCIENCE OF THE TOTAL ENVIRONMENT, 654, 1326–1336. https://doi.org/10.1016/j.scitotenv.2018.11.133 Chen, H., Xia, Q., Yang, T., Bowman, D., & Shi, W. (2019). The soil microbial community of turf: linear and nonlinear changes of taxa and N-cycling gene abundances over a century-long turf development. FEMS MICROBIOLOGY ECOLOGY, 95(2). https://doi.org/10.1093/femsec/fiy224 Cacho, J. F., Youssef, M. A., Shi, W., Chescheir, G. M., Skaggs, R. W., Tian, S., … Arellano, C. (2018). Impacts of forest-based bioenergy feedstock production on soil nitrogen cycling. Forest Ecology and Management, 419-420, 227–239. https://doi.org/10.1016/J.FORECO.2018.04.002 Chen, H., Yang, T., Xia, Q., Bowman, D., Williams, D., Walker, J. T., & Shi, W. (2018). The extent and pathways of nitrogen loss in turfgrass systems: Age impacts. SCIENCE OF THE TOTAL ENVIRONMENT, 637, 746–757. https://doi.org/10.1016/j.scitotenv.2018.05.053 Franzluebbers, A. J., Chappell, J. C., Shi, W., & Cubbage, F. W. (2017). Greenhouse gas emissions in an agroforestry system of the southeastern USA. NUTRIENT CYCLING IN AGROECOSYSTEMS, 108(1), 85–100. https://doi.org/10.1007/s10705-016-9809-7 Yuan, Y., Chen, H., Yuan, W., Williams, D., Walker, J. T., & Shi, W. (2017). Is biochar-manure co-compost a better solution for soil health improvement and N2O emissions mitigation? Soil Biology and Biochemistry, 113, 14–25. https://doi.org/10.1016/j.soilbio.2017.05.025 Barnes, J., Nelson, P. V., Hesterberg, D., Shi, W., & Whipker, B. E. (2017). Modeling impact of nitrogen carrier and concentration on root substrate pH. JOURNAL OF PLANT NUTRITION, 40(15), 2101–2108. https://doi.org/10.1080/01904167.2016.1143502 Chen, H., & Shi, W. (2017). Opening up the N2O-producing fungal community in an agricultural soil with a cytochrome p450nor-based primer tool. APPLIED SOIL ECOLOGY, 119, 392–395. https://doi.org/10.1016/j.apsoil.2017.07.022 Chen, H. H., Yu, F. B., & Shi, W. (2016). Detection of N2O-producing fungi in environment using nitrite reductase gene (nirK)-targeting primers. Fungal Biology, 120(12), 1479–1492. https://doi.org/10.1016/j.funbio.2016.07.012 Jia, X., Wang, M., Yuan, W., Shah, S., Shi, W., Meng, X., … Yang, B. (2016). N2O EMISSION AND NITROGEN TRANSFORMATION IN CHICKEN MANURE AND BIOCHAR CO-COMPOSTING. TRANSACTIONS OF THE ASABE, 59(5), 1277–1283. https://doi.org/10.13031/trans.59.11685 Chen, H., Williams, D., Walker, J. T., & Shi, W. (2016). Probing the biological sources of soil N2O emissions by quantum cascade laser-based N-15 isotopocule analysis. SOIL BIOLOGY & BIOCHEMISTRY, 100, 175–181. https://doi.org/10.1016/j.soilbio.2016.06.015 O'Connell, S., Grossman, J. M., Hoyt, G. D., Shi, W., Bowen, S., Marticorena, D. C., … Creamer, N. G. (2015). A survey of cover crop practices and perceptions of sustainable farmers in North Carolina and the surrounding region. Renewable Agriculture and Food Systems, 30(6), 550–562. https://doi.org/10.1017/s1742170514000398 Chen, H., Mothapo, N. V., & Shi, W. (2015). Fungal and bacterial N2O production regulated by soil amendments of simple and complex substrates. SOIL BIOLOGY & BIOCHEMISTRY, 84, 116–126. https://doi.org/10.1016/j.soilbio.2015.02.018 Mothapo, N., Chen, H., Cubeta, M. A., Grossman, J. M., Fuller, F., & Shi, W. (2015). Phylogenetic, taxonomic and functional diversity of fungal denitrifiers and associated N2O production efficacy. Soil Biology and Biochemistry, 83, 160–175. https://doi.org/10.1016/j.soilbio.2015.02.001 Lu, C., Bowman, D., Rufty, T., & Shi, W. (2015). Reactive Nitrogen in Turfgrass Systems: Relations to Soil Physical, Chemical, and Biological Properties. JOURNAL OF ENVIRONMENTAL QUALITY, 44(1), 210–218. https://doi.org/10.2134/jeq2014.06.0247 O’Connell, S., Shi, W., Grossman, J. M., Hoyt, G. D., Fager, K. L., & Creamer, N. G. (2015). Short-term nitrogen mineralization from warm-season cover crops in organic farming systems. Plant and Soil, 396(1-2), 353–367. https://doi.org/10.1007/s11104-015-2594-2 Chen, H., Mothapo, N. V., & Shi, W. (2015). Soil Moisture and pH Control Relative Contributions of Fungi and Bacteria to N2O Production. MICROBIAL ECOLOGY, 69(1), 180–191. https://doi.org/10.1007/s00248-014-0488-0 Tian, L., & Shi, W. (2014). Short-term effects of plant litter on the dynamics, amount, and stoichiometry of soil enzyme activity in agroecosystems. EUROPEAN JOURNAL OF SOIL BIOLOGY, 65, 23–29. https://doi.org/10.1016/j.ejsobi.2014.08.004 Liang, S., Grossman, J., & Shi, W. (2014). Soil microbial responses to winter, legume cover crop management during organic transition. EUROPEAN JOURNAL OF SOIL BIOLOGY, 65, 15–22. https://doi.org/10.1016/j.ejsobi.2014.08.007 Tian, L., & Shi, W. (2014). Soil peroxidase regulates organic matter decomposition through improving the accessibility of reducing sugars and amino acids. BIOLOGY AND FERTILITY OF SOILS, 50(5), 785–794. https://doi.org/10.1007/s00374-014-0903-1 Barnes, J., Nelson, P., Whipker, B. E., Dickey, D. A., Hesterberg, D., & Shi, W. (2014). Statistical model for describing macronutrient impacts on container substrate pH over time. HortScience, 49(2), 207–214. Chen, H., Mothapo, N. V., & Shi, W. (2014). The significant contribution of fungi to soil N2O production across diverse ecosystems. APPLIED SOIL ECOLOGY, 73, 70–77. https://doi.org/10.1016/j.apsoil.2013.08.011 Mothapo, N. V., Grossman, J. M., Sooksa-nguan, T., Maul, J., Bräuer, S. L., & Shi, W. (2013). Cropping history affects nodulation and symbiotic efficiency of distinct hairy vetch (Vicia villosa Roth.) genotypes with resident soil rhizobia. Biology and Fertility of Soils, 49(7), 871–879. https://doi.org/10.1007/S00374-013-0781-Y Mothapo, N. V., Grossman, J. M., Maul, J. E., Shi, W., & Isleib, T. (2013). Genetic diversity of resident soil rhizobia isolated from nodules of distinct hairy vetch (Vicia villosa Roth) genotypes. APPLIED SOIL ECOLOGY, 64, 201–213. https://doi.org/10.1016/j.apsoil.2012.12.010 Mothapo, N. V., Chen, H., Cubeta, M. A., & Shi, W. (2013). Nitrous oxide producing activity of diverse fungi from distinct agroecosystems. SOIL BIOLOGY & BIOCHEMISTRY, 66, 94–101. https://doi.org/10.1016/j.soilbio.2013.07.004 Li, X., Hu, F., Bowman, D., & Shi, W. (2013). Nitrous oxide production in turfgrass systems: Effects of soil properties and grass clipping recycling. Applied Soil Ecology, 67, 61–69. https://doi.org/10.1016/j.apsoil.2013.03.002 Li, X., Hu, F., & Shi, W. (2013). Plant material addition affects soil nitrous oxide production differently between aerobic and oxygen-limited conditions. APPLIED SOIL ECOLOGY, 64, 91–98. https://doi.org/10.1016/j.apsoil.2012.10.003 Chen, H., Li, X., Hu, F., & Shi, W. (2013). [Review of Soil nitrous oxide emissions following crop residue addition: a meta-analysis]. GLOBAL CHANGE BIOLOGY, 19(10), 2956–2964. https://doi.org/10.1111/gcb.12274 Gannon, T. W., Hixson, A. C., Weber, J. B., Shi, W., Yelverton, F. H., & Rufty, T. W. (2013). Sorption of Simazine and S-Metolachlor to Soils from a Chronosequence of Turfgrass Systems. WEED SCIENCE, 61(3), 508–514. https://doi.org/10.1614/ws-d-12-00173.1 Yang, K., Shi, W., & Zhu, J.-J. (2013). The impact of secondary forests conversion into larch plantations on soil chemical and microbiological properties. PLANT AND SOIL, 368(1-2), 535–546. https://doi.org/10.1007/s11104-012-1535-6 Dell, E. A., Carley, D. S., Rufty, T., & Shi, W. (2012). Heat stress and N fertilization affect soil microbial and enzyme activities in the creeping bentgrass (Agrostis Stolonifera L.) rhizosphere. Applied Soil Ecology, 56, 19–26. https://doi.org/10.1016/j.apsoil.2012.02.002 Taggart, M., Heitman, J. L., Shi, W., & Vepraskas, M. (2012). Temperature and Water Content Effects on Carbon Mineralization for Sapric Soil Material. Wetlands, 32(5), 939–944. https://doi.org/10.1007/S13157-012-0327-3 Richter, B. S., Ivors, K., Shi, W., & Benson, D. M. (2011). Cellulase Activity as a Mechanism for Suppression of Phytophthora Root Rot in Mulches. PHYTOPATHOLOGY, 101(2), 223–230. https://doi.org/10.1094/phyto-04-10-0125 Wherley, B., Bowman, D., Shi, W., & Rufty, T., Jr. (2011). Effect of Soil Saturation on Development and 15N-Nitrate Uptake Efficiency of Two Warm Season Grasses Emerging from Dormancy. Journal of Plant Nutrition, 34(13), 2039–2054. https://doi.org/10.1080/01904167.2011.610489 Liu, Y., Dell, E., Yao, H., Rufty, T., & Shi, W. (2011). Microbial and soil properties in bentgrass putting greens: Impacts of nitrogen fertilization rates. GEODERMA, 162(1-2), 215–221. https://doi.org/10.1016/j.geoderma.2011.02.009 Yao, H., Bowman, D., & Shi, W. (2011). Seasonal variations of soil microbial biomass and activity in warm- and cool-season turfgrass systems. SOIL BIOLOGY & BIOCHEMISTRY, 43(7), 1536–1543. https://doi.org/10.1016/j.soilbio.2011.03.031 Carley, D. S., Goodman, D., Sermons, S., Shi, W., Bowman, D., Miller, G., & Rufty, T. (2011). Soil Organic Matter Accumulation in Creeping Bentgrass Greens: A Chronosequence with Implications for Management and Carbon Sequestration. Agronomy Journal, 103(3), 604. https://doi.org/10.2134/agronj2010.0335 Tian, L., Dell, E., & Shi, W. (2010). Chemical composition of dissolved organic matter in agroecosystems: Correlations with soil enzyme activity and carbon and nitrogen mineralization. APPLIED SOIL ECOLOGY, 46(3), 426–435. https://doi.org/10.1016/j.apsoil.2010.09.007 Yao, H., & Shi, W. (2010). Soil organic matter stabilization in turfgrass ecosystems: Importance of microbial processing. SOIL BIOLOGY & BIOCHEMISTRY, 42(4), 642–648. https://doi.org/10.1016/j.soilbio.2010.01.003 Dell, E. A., Bowman, D., Rufty, T., & Shi, W. (2010). The community composition of soil-denitrifying bacteria from a turfgrass environment. RESEARCH IN MICROBIOLOGY, 161(5), 315–325. https://doi.org/10.1016/j.resmic.2010.03.010 Wherley, B. G., Shi, W., Bowman, D. C., & Rufty, T. W. (2009). Fate of N-15-Nitrate Applied to a Bermudagrass System: Assimilation Profiles in Different Seasons. CROP SCIENCE, 49(6), 2291–2301. https://doi.org/10.2135/cropsci2008.08.0468 Yao, H., Bowman, D., Rufty, T., & Shi, W. (2009). Interactions between N fertilization, grass clipping addition and pH in turf ecosystems: Implications for soil enzyme activities and organic matter decomposition. Soil Biology and Biochemistry, 41(7), 1425–1432. https://doi.org/10.1016/j.soilbio.2009.03.020 Hixson, A. C., Shi, W., Weber, J. B., Yelverton, F. H., & Rufty, T. W. (2009). Soil Organic Matter Changes in Turfgrass Systems Affect Binding and Biodegradation of Simazine. CROP SCIENCE, 49(4), 1481–1488. https://doi.org/10.2135/cropsci2008.09.0541 Dell, E. A., Bowman, D., Rufty, T., & Shi, W. (2008). Intensive management affects composition of betaproteobacterial ammonia oxidizers in turfgrass systems. MICROBIAL ECOLOGY, 56(1), 178–190. https://doi.org/10.1007/s00248-007-9335-x Iyyemperumal, K., Green, J., Jr., Israel, D. W., Ranells, N. N., & Shi, W. (2008). Soil chemical and microbiological properties in hay production systems: residual effects of contrasting N fertilization of swine lagoon effluent versus ammonium nitrate. BIOLOGY AND FERTILITY OF SOILS, 44(3), 425–434. https://doi.org/10.1007/s00374-007-0221-y Lyyemperumal, K., & Shi, W. (2008). Soil enzyme activities in two forage systems following application of different rates of swine lagoon effluent or ammonium nitrate. APPLIED SOIL ECOLOGY, 38(2), 128–136. https://doi.org/10.1016/j.apsoil.2007.10.001 Iyyemperumal, K., Israel, D. W., & Shi, W. (2007). Soil microbial biomass, activity and potential nitrogen mineralization in a pasture: Impact of stock camping activity. SOIL BIOLOGY & BIOCHEMISTRY, 39(1), 149–157. https://doi.org/10.1016/j.soilbio.2006.07.002 Iyyemperumal, K., & Shi, W. (2007). Soil microbial community composition and structure: residual effects of contrasting N fertilization of swine lagoon effluent versus ammonium nitrate. PLANT AND SOIL, 292(1-2), 233–242. https://doi.org/10.1007/s11104-007-9219-3 Shi, W., Dell, E., Bowman, D., & Iyyemperumal, K. (2006). Soil enzyme activities and organic matter composition in a turfgrass chronosequence. PLANT AND SOIL, 288(1-2), 285–296. https://doi.org/10.1007/s11104-006-9116-1 Shi, W., Muruganandam, S., & Bowman, D. (2006). Soil microbial biomass and nitrogen dynamics in a turfgrass chronosequence: A short-term response to turfgrass clipping addition. SOIL BIOLOGY & BIOCHEMISTRY, 38(8), 2032–2042. https://doi.org/10.1016/j.soilbio.2006.01.005 Shi, W., Yao, H. Y., & Bowman, D. (2006). Soil microbial biomass, activity and nitrogen transformations in a turfgrass chronosequence. SOIL BIOLOGY & BIOCHEMISTRY, 38(2), 311–319. https://doi.org/10.1016/j.soilbio.2005.05.008 Yao, H., Bowman, D., & Shi, W. (2006). Soil microbial community structure and diversity in a turfgrass chronosequence: Land-use change versus turfgrass management. APPLIED SOIL ECOLOGY, 34(2-3), 209–218. https://doi.org/10.1016/j.apsoil.2006.01.009 Shi, W., Bischoff, M., Turco, R., & Konopka, A. (2005). Microbial Catabolic Diversity in Soils Contaminated with Hydrocarbons and Heavy Metals. Environmental Science & Technology, 39(7), 1974–1979. https://doi.org/10.1021/es049034n Shi, W., Miller, B. E., Stark, J. M., & Norton, J. M. (2004). Microbial nitrogen transformations in response to treated dairy waste in agricultural soils. SOIL SCIENCE SOCIETY OF AMERICA JOURNAL, 68(6), 1867–1874. https://doi.org/10.2136/sssaj2004.1867 Shi, W., Morrison, J. M., & Bryden, H. L. (2002). Water, heat and freshwater flux out of the northern Indian Ocean in September-October 1995. DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY, 49(7-8), 1231–1252. https://doi.org/10.1016/S0967-0645(01)00154-0