2024 journal article
Characterizing PFAS hazards and risks: a human population-based in vitro cardiotoxicity assessment strategy
HUMAN GENOMICS, 18(1).
2024 journal article
Control of false discoveries in grouped hypothesis testing for eQTL data
BMC BIOINFORMATICS, 25(1).
2024 journal article
Control of false discoveries in grouped hypothesis testing for eQTL data
Springer Nature.
2024 article
Genetic variation in severe cystic fibrosis liver disease is associated with novel mechanisms for disease pathogenesis
Stonebraker, J., Pace, R., Gallins, P., Dang, H., Aksit, M., Faino, A., … Knowles, M. (2024, March 27). HEPATOLOGY, Vol. 3.
2024 journal article
Hazard and risk characterization of 56 structurally diverse PFAS using a targeted battery of broad coverage assays using six human cell types
TOXICOLOGY, 503.
2024 journal article
Liver eQTL meta-analysis illuminates potential molecular mechanisms of cardiometabolic traits
AMERICAN JOURNAL OF HUMAN GENETICS, 111(9).
2024 journal article
Predicting Microbiome Growth Dynamics under Environmental Perturbations
Applied Microbiology.
2023 review
AI in healthcare: navigating opportunities and challenges in digital communication
[Review of ]. FRONTIERS IN DIGITAL HEALTH, 5.
2023 journal article
Association of Pseudomonas aeruginosa infection stage with lung function trajectory in children with cystic fibrosis
JOURNAL OF CYSTIC FIBROSIS, 22(5), 857–863.
2023 journal article
Genetic Modifiers of Cystic Fibrosis Lung Disease Severity
AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE, 207(10), 1324–1333.
2023 journal article
Integrative Chemical-Biological Grouping of Complex High Production Volume Substances from Lower Olefin Manufacturing Streams
TOXICS, 11(7).
2023 journal article
Leveraging Scheme for Cross-Study Microbiome Machine Learning Prediction and Feature Evaluations
BIOENGINEERING-BASEL, 10(2).
2023 article
Simultaneous modeling of multivariate heterogeneous responses and heteroskedasticity via a two-stage composite likelihood
Ting, B. W. W., Wright, F. A., & Zhou, Y.-H. (2023, May 22). BIOMETRICAL JOURNAL.
2022 journal article
A Double Penalty Model for Ensemble Learning
MATHEMATICS, 10(23).
2022 journal article
A Machine Learning Pipeline for Mortality Prediction in the ICU
International Journal of Digital Health, 2(1).
2022 journal article
A Population-Based Human In Vitro Approach to Quantify Inter-Individual Variability in Responses to Chemical Mixtures
TOXICS, 10(8).
2022 journal article
A resource for integrated genomic analysis of the human liver
SCIENTIFIC REPORTS, 12(1).
2022 journal article
Accounting for population structure in genetic studies of cystic fibrosis
HUMAN GENETICS AND GENOMICS ADVANCES, 3(3).
2022 journal article
C3NA: correlation and consensus-based cross-taxonomy network analysis for compositional microbial data
BMC BIOINFORMATICS, 23(1).
2022 journal article
Comparing encounter-based and annualized chronic pseudomonas infection definitions in cystic fibrosis
JOURNAL OF CYSTIC FIBROSIS, 21(1), 40–44.
2022 article
Fast Multivariate Probit Estimation via a Two-Stage Composite Likelihood
Ting, B., Wright, F., & Zhou, Y.-H. (2022, February 15). STATISTICS IN BIOSCIENCES, Vol. 2.
2022 journal article
Improve the Colorectal Cancer Diagnosis Using Gut Microbiome Data
FRONTIERS IN MOLECULAR BIOSCIENCES, 9.
2022 journal article
Leveraging TOPMed imputation server and constructing a cohort-specific imputation reference panel to enhance genotype imputation among cystic fibrosis patients
HUMAN GENETICS AND GENOMICS ADVANCES, 3(2).
2022 journal article
MagicalRsq: Machine-learning-based genotype imputation quality calibration
AMERICAN JOURNAL OF HUMAN GENETICS, 109(11), 1986–1997.
2022 journal article
Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis
AMERICAN JOURNAL OF HUMAN GENETICS, 109(10), 1894–1908.
2021 journal article
Complete CFTR gene sequencing in 5,058 individuals with cystic fibrosis informs variant-specific treatment
JOURNAL OF CYSTIC FIBROSIS, 21(1), 463–470.
2021 journal article
Eigenvector-based sparse canonical correlation analysis: Fast computation for estimation of multiple canonical vectors
JOURNAL OF MULTIVARIATE ANALYSIS, 185.
2021 journal article
ImputEHR: A Visualization Tool of Imputation for the Prediction of Biomedical Data
FRONTIERS IN GENETICS, 12.
2021 journal article
Potential Human Health Hazard of Post-Hurricane Harvey Sediments in Galveston Bay and Houston Ship Channel: A Case Study of Using In Vitro Bioactivity Data to Inform Risk Management Decisions
INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 18(24).
2021 journal article
Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes
FOOD AND CHEMICAL TOXICOLOGY, 149.
2021 personal communication
The COVID-19 Pandemic Vulnerability Index (PVI) Dashboard: Monitoring County-Level Vulnerability Using Visualization, Statistical Modeling, and Machine Learning
Marvel, S. W., House, J. S., Wheeler, M., Song, K., Zhou, Y.-H., Wright, F. A., … Reif, D. M. (2021, January).
Contributors: S. Marvel n, J. House* , M. Wheeler *, K. Song n, n , F. Wright n, W. Chiu *, I. Rusyn *, A. Motsinger-Reif*, D. Reif n
2020 journal article
Exploring the Limits of Combined Image/'omics Analysis for Non-cancer Histological Phenotypes
FRONTIERS IN GENETICS, 11.
2020 journal article
Systematic Comparisons for Composition Profiles, Taxonomic Levels, and Machine Learning Methods for Microbiome-Based Disease Prediction
FRONTIERS IN MOLECULAR BIOSCIENCES, 7.
2019 journal article
A New Liver Expression Quantitative Trait Locus Map From 1,183 Individuals Provides Evidence for Novel Expression Quantitative Trait Loci of Drug Response, Metabolic, and Sex-Biased Phenotypes
CLINICAL PHARMACOLOGY & THERAPEUTICS, 107(6), 1383–1393.
2019 review
A Review and Tutorial of Machine Learning Methods for Microbiome Host Trait Prediction
[Review of ]. FRONTIERS IN GENETICS, 10.
2019 journal article
A note on cyclic shift permutation testing for large eigenvalues
Stat, 8(1).
2019 article
Marker-Trait Complete Analysis
Zhou, Y.-H., Gallins, P., & Wright, F. (2019, November 9). (Vol. 11). Vol. 11.
2019 journal article
Set‐based differential covariance testing for genomics
Stat, 8(1).
2018 journal article
A common allele in FGF21 associated with sugar intake is associated with body shape, lower total body-fat percentage, and higher blood pressure
Cell Reports, 23(2), 327–336.
2018 journal article
A common allele in FGF21 associated with sugar intake is associated with body shape, lower total body-fat percentage, and higher blood pressure
Cell Reports, 23(2), 327–336.
2018 journal article
A survey of high dimension low sample size asymptotics
AUSTRALIAN & NEW ZEALAND JOURNAL OF STATISTICS, 60(1), 4–19.
2018 journal article
A zero-inflated beta-binomial model for microbiome data analysis
STAT, 7(1).
2018 journal article
Airway mucosal host defense is key to genomic regulation of cystic fibrosis lung disease severity
American Journal of Respiratory and Critical Care Medicine, 197(1), 79–93.
2018 journal article
Airway mucosal host defense is key to genomic regulation of cystic fibrosis lung disease severity
American Journal of Respiratory and Critical Care Medicine, 197(1), 79–93.
2017 journal article
A Pipeline for High-Throughput Concentration Response Modeling of Gene Expression for Toxicogenomics
Frontiers in Genetics, 8, 168.
2017 journal article
A Two-Stage Hidden Markov Model Design for Biomarker Detection, with Application to Microbiome Research
Statistics in Biosciences, 10(1), 41–58.
2017 journal article
A procedure to detect general association based on concentration of ranks
Stat, 6(1), 88–101.
2017 journal article
Changes in vaginal community state types reflect major shifts in the microbiome
Microbial Ecology in Health and Disease, 28(1), 1303265.
2017 journal article
Changes in vaginal community state types reflect major shifts in the microbiome
Microbial Ecology in Health and Disease, 28(1), 1303265.
2017 journal article
Computation of ancestry scores with mixed families and unrelated individuals
BIOMETRICS, 74(1), 155–164.
2017 journal article
Dynamic landscape and regulation of RNA editing in mammals
Nature, 550(7675), 249–254.
2017 journal article
Editor's Highlight: Comparative Dose-Response Analysis of Liver and Kidney Transcriptomic Effects of Trichloroethylene and Tetrachloroethylene in B6C3F1 Mouse
TOXICOLOGICAL SCIENCES, 160(1), 95–110.
2017 journal article
Eigenvalue Significance Testing for Genetic Association
Biometrics.
2017 journal article
Estimation of cis-eQTL effect sizes using a log of linear model
BIOMETRICS, 74(2), 616–625.
2017 journal article
Genetic effects on gene expression across human tissues
Nature, 550(7675), 204–213.
Ed(s): A. Battle *, C. Brown *, B. Engelhardt * & S. Montgomery *
2017 journal article
The impact of rare variation on gene expression across tissues
Nature, 550(7675), 239–243.
2016 journal article
Estimation of interpretable eQTL effect sizes using a log of linear model
ArXiv Preprint ArXiv:1605.08799.
2016 journal article
Genomic characterization of metformin hepatic response
PLoS Genetics, 12(11), e1006449.
2016 journal article
Homologous recombination and translesion DNA synthesis play critical roles on tolerating DNA damage caused by trace levels of hexavalent chromium
PLoS One, 11(12).
2016 journal article
Homologous recombination and translesion DNA synthesis play critical roles on tolerating DNA damage caused by trace levels of hexavalent chromium
PloS One, 11(12), e0167503.
2016 conference paper
Poster: risk-based attack surface approximation
Symposium and Bootcamp on the Science of Security, 121–123.
2016 journal article
The projack: a resampling approach to correct for ranking bias in high-throughput studies
Biostatistics (Oxford, England), 17(1), 54–64.
2016 journal article
Visualization of robust L1PCA
Stat, 5(1), 173–184.
2015 journal article
Effect of predicted protein-truncating genetic variants on the human transcriptome
Science, 348(6235), 666–669.
2015 journal article
Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci
Human Molecular Genetics, 24(15), 4464–4479.
2015 journal article
Epigenome-wide association study (EWAS) of BMI, BMI change and waist circumference in African American adults identifies multiple replicated loci
Human Molecular Genetics, 24(15), 4464–4479.
2015 journal article
Gene Expression in Transformed Lymphocytes Reveals Variation in Endomembrane and HLA Pathways Modifying Cystic Fibrosis Pulmonary Phenotypes
The American Journal of Human Genetics, 96(2), 318–328.
2015 journal article
Gene expression in transformed lymphocytes reveals variation in endomembrane and HLA pathways modifying cystic fibrosis pulmonary phenotypes
The American Journal of Human Genetics, 96(2), 318–328.
2015 journal article
Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis
Nature Communications, 6(1).
2015 journal article
Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis
Nature Communications, 6.
2015 journal article
Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis
Nature Communications, 6, 8382.
2015 journal article
High dimension low sample size asymptotics of robust PCA
ELECTRONIC JOURNAL OF STATISTICS, 9(1), 204–218.
2015 journal article
High dimension low sample size asymptotics of robust PCA
Electronic Journal of Statistics, 9(1), 204–218.
2015 journal article
Hypothesis testing at the extremes: fast and robust association for high-throughput data
BIOSTATISTICS, 16(3), 611–625.
2015 journal article
Identification of Novel Gene Targets and Putative Regulators of Arsenic-Associated DNA Methylation in Human Urothelial Cells and Bladder Cancer
Chemical Research in Toxicology, 28(6), 1144–1155.
2015 journal article
Identification of novel gene targets and putative regulators of arsenic-associated DNA methylation in human urothelial cells and bladder cancer
Chemical Research in Toxicology, 28(6), 1144–1155.
2015 journal article
Identification of novel gene targets and putative regulators of arsenic-associated DNA methylation in human urothelial cells and bladder cancer
Chemical Research in Toxicology, 28(6), 1144–1155.
2015 journal article
Metabolomic evaluation of neutrophilic airway inflammation in cystic fibrosis
Chest, 148(2), 507–515.
2015 journal article
Pathway Analysis for RNA-Seq Data Using a Score-Based Approach
BIOMETRICS, 72(1), 165–174.
2015 journal article
PathwaySeq: Pathway analysis for RNA-Seq data using a score-based approach
Dim (Data. Test), 1(1000), 448.
2015 journal article
Population-Based in Vitro Hazard and Concentration-Response Assessment of Chemicals: The 1000 Genomes High-Throughput Screening Study
ENVIRONMENTAL HEALTH PERSPECTIVES, 123(5), 458–466.
2015 journal article
Population-based in vitro hazard and concentration--response assessment of chemicals: the 1000 genomes high-throughput screening study
Environmental Health Perspectives, 123(5), 458.
2015 journal article
The Genotype-Tissue Expression (GTEx) pilot analysis: Multitissue gene regulation in humans
Science, 348(6235), 648–660.
2015 journal article
The projack: a resampling approach to correct for ranking bias in high-throughput studies
Biostatistics, 17(1), 54–64.
2014 journal article
Cadmium exposure and the epigenome: Exposure-associated patterns of DNA methylation in leukocytes from mother-baby pairs
Epigenetics, 9(2), 212–221.
2014 journal article
Heritability and genomics of gene expression in peripheral blood
Nature Genetics, 46(5), 430–437.
2014 journal article
Heritability and genomics of gene expression in peripheral blood
Nature Genetics, 46(5), 430–437.
2014 journal article
Heritability and genomics of gene expression in peripheral blood
Nature Genetics, 46(5), 430.
2014 journal article
Physiologically Based Pharmacokinetic (PBPK) Modeling of Interstrain Variability in Trichloroethylene Metabolism in the Mouse
ENVIRONMENTAL HEALTH PERSPECTIVES, 122(5), 456–463.
2014 journal article
Physiologically based pharmacokinetic (PBPK) modeling of interstrain variability in trichloroethylene metabolism in the mouse
Environmental Health Perspectives, 122(5), 456.
2014 journal article
RNA-Seq pathway analysis
2013 journal article
Empirical pathway analysis, without permutation
Biostatistics, (doi:10.1093/biostatistics/kxt004), 1–13.
2013 chapter
Metabolomic Evaluation Of Cystic Fibrosis Airways Disease
In A26. PEDIATRIC CYSTIC FIBROSIS (pp. A1165–A1165). American Thoracic Society.
2013 journal article
Skill-assessments of statistical and Ensemble Kalman Filter data assimilative analyses using surface and deep observations in the Gulf of Mexico
Frontiers of Earth Science, 7(3), 271–281.
2013 journal article
Space-time clustering and the permutation moments of quadratic forms
Stat, 2(1), 292–302.
2013 journal article
Stochastic comparisons in a price-quantity setting firm with uncertain demand and emergency procurement
Journal of Systems Science and Systems Engineering, 22(4), 401–420.
2013 journal article
Stochastic comparisons in a price-quantity setting firm with uncertain demand and emergency procurement
Journal of Systems Science and Systems Engineering, 22(4), 401–420.
2012 journal article
Quantitative high-throughput screening for chemical toxicity in a population-based in vitro model
Toxicological Sciences.
2012 journal article
Simple and accurate trend tests using a permutation approximation
2012 journal article
Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data
Statistics in Biosciences, 5(1), 3–25.
2012 journal article
Single Nucleotide Polymorphism (SNP) Detection and Genotype Calling from Massively Parallel Sequencing (MPS) Data
Statistics in Biosciences, 1–23.
2012 journal article
Supplementary material for: Empirical Pathway Analysis, Without Permutation
2011 journal article
A powerful and flexible approach to the analysis of RNA sequence count data
Bioinformatics, 27(19), 2672–2678.
2011 journal article
seeQTL: a searchable database for human eQTLs
Bioinformatics, 28(3), 451–452.
2009 journal article
On the finiteness of the cone spectrum of certain linear transformations on Euclidean Jordan algebras
Linear Algebra and Its Applications, 431(5-7), 772–782.
journal article
Medical Center, New York, NY 10032, USA. 18Wellcome Trust Centre for Human Genetics Research, Nuffield Department of Clinical Medicine, University of Oxford, Oxford OX3 7BN, UK. 19Department of Computer Science, Stanford University, Stanford, CA 94305, USA. 20Department of Computer Science, Johns
journal article
Significant Chlorinated Paraffin Concentrations Together with Traditional and Emerging Pollutants in Wildlife from a Yangtze River Delta Area Site
Yin, G., Zhou, Y., Asplund, L., Athanassiadis, I., Wideqvist, U., Qiu, Y., … Bergman, Å.
journal article
Supplemental Material Physiologically Based Pharmacokinetic (PBPK) Modeling of Interstrain Variability in Trichloroethylene Metabolism in the Mouse
journal article
Supplementary Appendix to: Hypothesis testing at the extremes: fast and robust association for high-throughput data
Zhou, Y.-H., & Wright, F. A.
journal article
on July 8, 2015
DeLuca, D. S., Segrè, A. V., Sullivan, T. J., Young, T. R., Gelfand, E. T., Trowbridge, C. A., … others.
Updated: June 10th, 2024 09:18
2018 - 2024
2018 - 2024
Updated: August 31st, 2018 19:20
2007 - 2011
Funding history based on the linked ORCID record. Updated: January 3rd, 2024 13:54
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