Zhe Lyu

Lyu, Z., Rotaru, A.-E., Pimentel, M., Zhang, C.-J., & Rittmann, S. K.-M. R. (2022). Editorial: The methane moment - Cross-boundary significance of methanogens: Preface. Frontiers in Microbiology, 13. https://doi.org/10.3389/fmicb.2022.1055494

Lyu, Z. (2021). Back to the Source: Molecular Identification of Methanogenic Archaea as Markers of Colonic Methane Production. Digestive Diseases and Sciences, 66(11), 3661–3664. https://doi.org/10.1007/s10620-021-06839-0

Akinyemi, T. S., Shao, N., Lyu, Z., Drake, I. J., Liu, Y., & Whitman, W. B. (2021). Tuning Gene Expression by Phosphate in the Methanogenic Archaeon Methanococcus maripaludis. ACS Synthetic Biology, 10(11), 3028–3039. https://doi.org/10.1021/acssynbio.1c00322

Zhang, Z., Cotter, C. R., Lyu, Z., Shimkets, L. J., & Igoshin, O. A. (2020). Data-Driven Models Reveal Mutant Cell Behaviors Important for Myxobacterial Aggregation. MSystems, 5(4). https://doi.org/10.1128/mSystems.00518-20

Zhang, Z., Cotter, C. R., Lyu, Z., Shimkets, L. J., & Igoshin, O. A. (2020, February 10). Data-driven models reveal mutant cell behaviors important for myxobacterial aggregation. [], Vol. 2. https://doi.org/10.1101/2020.02.08.939462

Lyu, Z., Shao, N., Chou, C.-W., Shi, H., Patel, R., Duin, E. C., & Whitman, W. B. (2020). Posttranslational Methylation of Arginine in Methyl Coenzyme M Reductase Has a Profound Impact on both Methanogenesis and Growth of Methanococcus maripaludis. Journal of Bacteriology, 202(3). https://doi.org/10.1128/jb.00654-19

Lyu, Z., & Liu, Y. (2019, July). Diversity and Taxonomy of Methanogens. Biogenesis of Hydrocarbons, pp. 19–77. https://doi.org/10.1007/978-3-319-78108-2_5

Zhao, C., Lyu, Z., Long, F., Akinyemi, T., Manakongtreecheep, K., Söll, D., … Liu, Y. (2019). The Nbp35/ApbC homolog acts as a nonessential [4Fe‐4S] transfer protein in methanogenic archaea. FEBS Letters, 594(5), 924–932. https://doi.org/10.1002/1873-3468.13673

Lyu, Z., & Whitman, W. B. (2019). Transplanting the pathway engineering toolbox to methanogens. Current Opinion in Biotechnology, 59, 46–54. https://doi.org/10.1016/j.copbio.2019.02.009

Lyu, Z., Chou, C.-W., Shi, H., Wang, L., Ghebreab, R., Phillips, D., … Whitman, W. B. (2018). Assembly of Methyl Coenzyme M Reductase in the Methanogenic Archaeon Methanococcus maripaludis. Journal of Bacteriology, 200(7). https://doi.org/10.1128/JB.00746-17

Lyu, Z., & Liu, Y. (2018). Diversity and Taxonomy of Methanogens. Biogenesis of Hydrocarbons, pp. 1–59. https://doi.org/10.1007/978-3-319-53114-4_5-2

Lyu, Z., & Lu, Y. (2018). Metabolic shift at the class level sheds light on adaptation of methanogens to oxidative environments. The ISME Journal. https://doi.org/10.1038/ismej.2017.173

Lyu, Z., Shao, N., Akinyemi, T., & Whitman, W. B. (2018). Methanogenesis. Current Biology, 28(13), R727–R732. https://doi.org/10.1016/j.cub.2018.05.021

Lyu, Z., Li, Z.-G., He, F., & Zhang, Z. (2017). An Important Role for Purifying Selection in Archaeal Genome Evolution. MSystems, 2(5), e00112–17. https://doi.org/10.1128/msystems.00112-17

Lyu, Z., Chou, C.-wen, Shi, H., Patel, R., Duin, E. C., & Whitman, W. B. (2017, October 30). Mmp10 is required for post-translational methylation of arginine at the active site of methyl-coenzyme M reductase (Vol. 10). Vol. 10. https://doi.org/10.1101/211441

Pikuta, E. V., Lyu, Z., Williams, M. D., Patel, N. B., Liu, Y., Hoover, R. B., … Whitman, W. B. (2017). Sanguibacter gelidistatuariae sp. nov., a novel psychrotolerant anaerobe from an ice sculpture in Antarctica, and emendation of descriptions for the family Sanguibacteraceae, the genus Sanguibacter and species S. antarcticus, S. inulinus, S. kedieii, S. marinus, S.soli and S. suarezii. International Journal of Systematic and Evolutionary Microbiology. https://doi.org/10.1099/ijsem.0.001838

Williamwhitmania taraxaci gen. nov., sp. nov., a proteolytic anaerobe with a novel type of cytology from Lake Untersee in Antarctica, description of Williamwhitmaniaceae fam. nov., and emendation of the order Bacteroidales Krieg 2012. (2017). International Journal of Systematic and Evolutionary Microbiology, 9. https://doi.org/10.1099/ijsem.0.002266

Lyu, Z., Jain, R., Smith, P., Fetchko, T., Yan, Y., & Whitman, W. B. (2016). Engineering the Autotroph Methanococcus maripaludis for Geraniol Production. ACS Synthetic Biology. Retrieved from http://europepmc.org/abstract/med/26886063

Lyu, Z., & Whitman, W. B. (2016). Evolution of the archaeal and mammalian information processing systems: towards an archaeal model for human disease. Retrieved from http://europepmc.org/abstract/med/27261368

Pikuta, E. V., Menes, R. J., Bruce, A. M., Lyu, Z., Patel, N. B., Liu, Y., … Whitman, W. B. (2016). Raineyella antarctica gen. nov., sp. nov., a psychrotolerant, d-amino-acid-utilizing anaerobe isolated from two geographic locations of the Southern Hemisphere. International Journal of Systematic and Evolutionary Microbiology, 66(12), 5529–5536, https://doi.org/10.1099/ijsem.0.001552

Lyu, Z., & Lu, Y. (2015). Comparative genomics of three Methanocellales strains reveal novel taxonomic and metabolic features. Environmental Microbiology Reports, 2, n/a-n/a. https://doi.org/10.1111/1758-2229.12283

Pikuta, E. V., Lyu, Z., Whitman, W. B., LaBrake, G. R., Wallis, J., Wickramarathne, K., … Hoover, R. B. (2015). Microbiological investigation of two chondrite meteorites: Murchison and Polonnaruwa. In R. B. Hoover, G. V. Levin, A. Y. Rozanov, & N. C. Wickramasinghe (Eds.), Instruments, Methods, and Missions for Astrobiology XVII. https://doi.org/10.1117/12.2191203

Lyu, Z., Pikuta, E. V., Hagel, J., LaBrake, G. R., Hoover, R. B., & Whitman, W. B. (2015). Molecular studies of anaerobic strains from Antarctica and their taxonomic identifications. In R. B. Hoover, G. V. Levin, A. Y. Rozanov, & N. C. Wickramasinghe (Eds.), Instruments, Methods, and Missions for Astrobiology XVII. https://doi.org/10.1117/12.2192787

Liu, P., Yang, Y., Lu, Z., & Lu, Y. (2014). Response of a paddy soil methanogen to syntrophic growth as revealed by transcriptional analyses. Applied and Environmental Microbiology, 5. https://doi.org/10.1128/AEM.01259-14

Lu, Z., & Lu, Y. (2012). Complete Genome Sequence of a Thermophilic Methanogen, Methanocella conradii HZ254, Isolated from Chinese Rice Field Soil. Journal of Bacteriology, 194(9), 2398–2399. https://doi.org/10.1128/jb.00207-12

Methanocella conradii sp. nov., a Thermophilic, Obligate Hydrogenotrophic Methanogen, Isolated from Chinese Rice Field Soil. (2012). https://doi.org/10.1371/journal.pone.0035279

Peng, J., Lu, Z., Rui, J., & Lu, Y. (2008). Dynamics of the Methanogenic Archaeal Community during Plant Residue Decomposition in an Anoxic Rice Field Soil. Applied and Environmental Microbiology, 74(9), 2894–2901. https://doi.org/10.1128/aem.00070-08