Genomic Sciences - 2006

Decker, W., Dewar, M., Kaltofen, E., & Watt, S. (Eds.). (2006). Challenges in Symbolic Computation Software, number 06271. In Dagstuhl Seminar Proceedings. Germany: Schloss Dagstuhl.

Heldt, C. L., Hernandez, R., Mudiganti, U., Gurgel, P. V., Brown, D. T., & Carbonell, R. G. (2006). A colorimetric assay for viral agents that produce cytopathic effects. Journal of Virological Methods, 135(1), 56–65. https://doi.org/10.1016/j.jviromet.2006.01.022

Lappin, M. R., Hawley, J. R., & Breitschwerdt, E. B. (2006). Bartonella spp. antigen recognition patterns in cats with and without fever. Journal of Veterinary Internal Medicine, 20(3), 710.

Diniz, P., Schwartz, D. S., Machado, R. Z., Bradley, J. M., Hegarty, B. C., & Breitschwerdt, E. B. (2006). Anaplasma spp, babesia canis, bartonella henselae, bartonella vinsonii subsp berkhoffii, borrelia burgdorferi, dirofilaria immitis, and ehrlichia canis seroprevalences in brazilian dogs. Journal of Veterinary Internal Medicine, 20(3), 712–713.

Beall, M., Chandrashekar, R., Eberts, M., Cyr, K., Diniz, P. P. V. P., Mainville, C., … Breitschwerdt, E. B. (2006). Borrelia burgdorferi and anaplasma phagocytophilum: Potential implications of co-infection on clinical presentation in the dog. Journal of Veterinary Internal Medicine, 20(3), 713–714.

Diniz, P., Schwartz, D. S., Maggi, R. G., Cadenas, M. B., & Breitschwerdt, E. B. (2006). Molecular prevalence of bartonella spp. in brazilian dogs. Journal of Veterinary Internal Medicine, 20(3), 762.

Mahaffey, J. W., & Dworkin, I. (2006). Imaginal Discs, the Genetic and Cellular Logic of Pattern Formation. Lewis I Held, Jr. Cambridge University Press. 2005. 461 pages. ISBN 0 521 01835 8. Price £38. (paperback). (ISBN 0521 58445 0. Price £120. (hardback) published 2002). Genetical Research, 87(3), 219–219. https://doi.org/10.1017/S0016672306238254

Kidd, L., Hegarty, B., Sexton, D., & Breitschwerdt, E. (2006). Molecular Characterization of Rickettsia rickettsii Infecting Dogs and People in North Carolina. Annals of the New York Academy of Sciences, 1078(1), 400–409. https://doi.org/10.1196/annals.1374.079

Lobo, R. G., Bitzer, D. L., & Vouk, M. A. (2006). Locally Invertible Multivariate Polynomial Matrices. In Coding and Cryptography (pp. 427–441). https://doi.org/10.1007/11779360_33

Kaltofen, E., & Zhi, L. (2006). Hybrid symbolic-numeric computation. Proceedings of the 2006 international symposium on Symbolic and algebraic computation  - ISSAC '06. Presented at the the 2006 international symposium. https://doi.org/10.1145/1145768.1145775

Kaltofen, E., & Koiran, P. (2006). Finding small degree factors of multivariate supersparse (lacunary) polynomials over algebraic number fields. Proceedings of the 2006 international symposium on Symbolic and algebraic computation  - ISSAC '06. Presented at the the 2006 international symposium. https://doi.org/10.1145/1145768.1145798

Vanholme, B., Mitreva, M., Van Criekinge, W., Logghe, M., Bird, D., McCarter, J. P., & Gheysen, G. (2006). Detection of putative secreted proteins in the plant-parasitic nematode Heterodera schachtii. Parasitology Research, 98(5), 414–424. https://doi.org/10.1007/s00436-005-0029-3

Ristaino, J. B., Liu, B., Carbone, I., & Campbell, M. (2006). Comparative analysis of the mituchondrial genome organization in Phytophthora species and related Straminopiles. PHYTOPATHOLOGY, 96(6), S98–S98.

Blanco, M., Ristaino, J., Carbone, I., & Ivors, K. (2006). Genetic structure of populations of the tobacco blue mold pathogen, Peronospora tabacina in North and Central America and the Caribbean. PHYTOPATHOLOGY, 96(6), S13–S13.

Ristaino, J. (2006). Tracking the evolutionary history of the potato late blight pathogen with historical collections. Outlooks on Pest Management, 17(5), 228–231. https://doi.org/10.1564/17oct12

Kaltofen, E., Yang, Z., & Zhi, L. (2006). Approximate greatest common divisors of several polynomials with linearly constrained coefficients and singular polynomials. Proceedings of the 2006 international symposium on Symbolic and algebraic computation  - ISSAC '06. Presented at the the 2006 international symposium. https://doi.org/10.1145/1145768.1145799

Santos, A. P., Wegel, E., Allen, G. C., Thompson, W. F., Stoger, E., Shaw, P., & Abranches, R. (2006). In situ methods to localize transgenes and transcripts in interphase nuclei: a tool for transgenic plant research. Plant Methods, 2, 18. https://doi.org/10.1186/1746-4811-2-18

Anholt, R. R. H. (2006). Dazzle 'em with style the art of oral scientific presentation. Burlington, MA: Elsevier Academic Press.

Frampton, J., & Doubrava, N. (2006). Riding high for Christmas tree research at N.C. State University. Friends of the NCSU Arboretum Newsletter, 10(1), 7.

Frampton, J., & Isik, F. (2006). Perspectives on Turkey. Limbs & Needles, 33(2), 17–19.

Rutledge, L., & Frampton, J. (2006). Nipping it in the bud: a new tool for tackling leader growth ... to the Mountinas of North Carolina. American Christmas Tree Journal, 50(2), 21–22.

Frampton, J., & Isik, F. (2006). Low input improvement of Christmas trees. Proceedings, IUFRO Division 2 Joint Conference : low input breeding and genetic conservation of forest tree species : 9-13 October 2006 Antalya Turkey, 60.

Gocke, M., Schuler, J., Robison, D., & Goldfarb, B. (2006). Development of northern red oak rooted cutting and enrichment planting systems. Proc. Ninth Workshop on Seedling Physiology and Growth Problems in Oak Plantings, 9(5). Lafayette, IN: USFS Forest Service.

Isik, F., & Frampton, J. (2006). Perspectives on forestry in Turkey. Sylvanet, 19(1), 13–15.

Isik, F., McKeand, S., Li, B., & Amerson, H. (2006). Marker aided selection of loblolly pine clones. Consortium for Plant Biotechnology Symposium.

Aspinwall, M., Li, B., McKeand, S., Isik, F., & Gumpertz, M. (2006). Predicting whole-stem wood properties in loblolly pine. Information Exchange Group 40 Conference, Incorporating Genetic Advances into Forest Productivity Systems: Value for All Landowners.
Exchange Group 40 Conference, Incorporating Genetic Advances into Forest
Productivity Systems: Value for All Landowners., 40.

Bocian, D. F., Kuhr, W. G., & Lindsey, J. (2006). High density molecular memory device. Washington, DC: U.S. Patent and Trademark Office.

Bocian, D. F., Kulu, W. G., Lindsey, J., Clausen, P. C., & Gryko, D. T. (2006). High density non-volatile memory device. Washington, DC: U.S. Patent and Trademark Office.

Helmer, G. L., Allen, G. C., & Thompson, W. F. (2006). High efficiency gene targeting in plants. Washington, DC: U.S. Patent and Trademark Office.

Allen, G. C., Flores-Vergara, M. A., Krasnyanski, S., Kumar, S., & Thompson, W. (2006). A modified protocol for rapid DNA isolation from plant tissues using cetyltrimethylammonium bromide. Nature Physics, 1(5), 2320–2325. https://doi.org/10.1038/nprot.2006.384

Lindsey, J., Loewe, R. S., Muthukumaran, K., & Ambroise, A. (2006). Synthesis of phosphono-substituted porphyrin compounds for attachment to metal oxide surfaces. Washington, DC: U.S. Patent and Trademark Office.

Lindsey, J., Muthukumaran, K., Ptaszek, M., & Zaidi, S. H. (2006). Boron complexation strategy for use in manipulating 1-acyldipyrromethanes. Washington, DC: U.S. Patent and Trademark Office.

Yu, Q., Li, B., Nelson, C. D., McKeand, S., Batista, V. B., & Mullin, T. J. (2006). Association of the cad-n1 allele with increased stem growth and wood density in full-sib families of loblolly pine. Tree Genetics & Genomes, 2(2), 98–108. https://doi.org/10.1007/s11295-005-0032-y

Myburg, H., Morse, A. M., Amerson, H. V., Kubisiak, T. L., Huber, D., Osborne, J. A., … Van Zyl, L. M. (2006). Differential gene expression in loblolly pine (Pinus taeda L.) challenged with the fusiform rust fungus, Cronartium quercuum f.sp fusiforme. Physiological and Molecular Plant Pathology, 68(1-3), 79–91. https://doi.org/10.1016/j.pmpp.2006.07.002

Aghoram, K., Wilson, R. E., Burton, J. W., & Dewey, R. E. (2006). A mutation in a 3-keto-acyl-ACP synthase II gene is associated with elevated palmitic acid levels in soybean seeds. Crop Science, 46(6), 2453–2459. https://doi.org/10.2135/cropsci2006.04.0218

Solano-Gallego, L., Hegarty, B., Espada, Y., Llull, J., & Breitschwerdt, E. (2006). Serological and molecular evidence of exposure to arthropod-borne organisms in cats from northeastern Spain. Veterinary Microbiology, 118(3-4), 274–277. https://doi.org/10.1016/j.vetmic.2006.07.010

Shen, W., & Hanley-Bowdoin, L. (2006). Geminivirus infection up-regulates the expression of two Arabidopsis protein kinases related to yeast SNF1-and mammalian AMPK-activating kinases. Plant Physiology, 142(4), 1642–1655. https://doi.org/10.1104/pp.106.088476

Blevins, T., Rajeswaran, R., Shivaprasad, P. V., Beknazariants, D., Si-Ammour, A., Park, H. S., … Pooggin, M. M. (2006). Four plant Dicers mediate viral small RNA biogenesis and DNA virus induced silencing. Nucleic Acids Research, 34(21), 6233–6246. https://doi.org/10.1093/nar/gkl886

McKeand, S. E., Abt, R. C., Allen, H. L., Li, B. L., & Catts, G. P. (2006). What are the best loblolly pine genotypes worth to landowners? Journal of Forestry, 104(7), 352–358.

Rosier, C. L., Frampton, J., Goldfarb, B., Blazich, F. A., & Wise, F. C. (2006). Improving the rooting capacity of stem cuttings of Virginia pine by severe stumping of parent trees. Southern Journal of Applied Forestry, 30(4), 172–181.

Tang, T., Lu, J., Huang, J. Z., He, J. H., McCouch, S. R., Shen, Y., … Wu, C. I. (2006). Genomic variation in rice: Genesis of highly polymorphic linkage blocks during domestication. PLoS Genetics, 2(11), 1824–1833. https://doi.org/10.1371/journal.pgen.0020199

Solano-Gallego, L., Kidd, L., Trotta, M., Di Marco, M., Caldin, M., Furlanello, T., & Breitschwerdt, E. (2006). Febrile Illness Associated with Rickettsia conorii Infection in Dogs from Sicily. Emerging Infectious Diseases, 12(12), 1985–1988. https://doi.org/10.3201/eid1212.060326

Sambandan, D., Yamamoto, A., Fanara, J. J., MacKay, T. F. C., & Anholt, R. R. H. (2006). Dynamic genetic interactions determine odor-guided behavior in Drosophila melanogaster. Genetics, 174(3), 1349–1363. https://doi.org/10.1534/genetics.106.060574

Kelly, P., Rolain, J. M., Maggi, R., Sontakke, S., Keene, B., Hunter, S., … al. (2006). Bartonella quintana Endocarditis in Dogs. Emerging Infectious Diseases, 12(12), 1869–1872. https://doi.org/10.3201/eid1212.060724

Hasselman, G. M., Watson, D. F., Stromberg, J. R., Bocian, D. F., Holten, D., Lindsey, J., & Meyer, G. J. (2006). Theoretical solar-to-electrical energy-conversion efficiencies of perylene-porphyrin light-harvesting arrays. Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 110(50), 25430–25440. https://doi.org/10.1021/jp064547x

Gary, A. T., Webb, J. A., Hegarty, B. C., & Breitschwerdt, E. B. (2006). The low seroprevalence of tick-transmitted agents of disease in dogs from southern Ontario and Quebec. Canadian Veterinary Journal, 47(12), 1194–1200.

Emerson, J. L., Frampton, J., & McKeand, S. E. (2006). Genetic variation of spring frost damage in 3-year-old Fraser fir Christmas tree plantations. HortScience, 41(7), 1531–1536.

Yeh, T. F., Morris, C. R., Goldfarb, B., Chang, H. M., & Kadla, J. F. (2006). Utilization of polar metabolite profiling in the comparison of juvenile wood and compression wood in loblolly pine (Pinus taeda). Tree Physiology, 26(11), 1497–1503. https://doi.org/10.1093/treephys/26.11.1497

Kim, C. S., Gibbon, B. C., Gillikin, J. W., Larkins, B. A., Boston, R. S., & Jung, R. (2006). The maize Mucronate mutation is a deletion in the 16-kDa gamma-zein gene that induces the unfolded protein response. Plant Journal, 48(3), 440–451. https://doi.org/10.1111/j.1365-313X.2006.02884.x

Moehring, A. J., Llopart, A., Elwyn, S., Coyne, J. A., & Mackay, T. F. C. (2006). The  genetic basis of prezygotic reproductive isolation between Drosophila santomea and D-yakuba due to mating preference. Genetics, 173(1), 215–223. https://doi.org/10.1534/genetics.105.052993

Moehring, A. J., Llopart, A., Elwyn, S., Coyne, J. A., & Mackay, T. F. C. (2006). The  genetic basis of postzygotic reproductive isolation between Drosophila santomea and D-yakuba due to hybrid male sterility. Genetics, 173(1), 225–233. https://doi.org/10.1534/genetics.105.052985

Feeney, B., Pop, C., Swartz, P., Mattos, C., & Clark, A. C. (2006). Role of loop bundle hydrogen bonds in the maturation and activity of (pro) caspase-3. Biochemistry, 45(44), 13249–13263. https://doi.org/10.1021/bi0611964

West, J., & Brown, D. T. (2006). Role of a conserved tripeptide in the endodomain of Sindbis virus glycoprotein E2 in virus assembly and function. Journal of General Virology, 87, 657–664. https://doi.org/10.1099/vir.0.81304-0

Jordan, K. W., Morgan, T. J., & MacKay, T. F. C. (2006). Quantitative trait loci for locomotor behavior in Drosophila melanogaster. Genetics, 174(1), 271–284. https://doi.org/10.1534/genetics.106.058099

Starmer, J., Stomp, A., Vouk, M., & Bitzer, D. (2006). Predicting Shine-Dalgarno sequence locations exposes genome annotation errors. PLoS Computational Biology, 2(5), 454–466. https://doi.org/10.1371/journal.pcbi.0020057

Miranda, L. M., Murphy, J. P., Marshall, D., & Leath, S. (2006). Pm34: a new powdery mildew resistance gene transferred from Aegilops tauschii Coss. to common wheat (Triticum aestivum L.). Theoretical and Applied Genetics, 113(8), 1497–1504. https://doi.org/10.1007/s00122-006-0397-9

Lopez-Ochoa, L., Ramirez-Prado, J., & Hanley-Bowdoin, L. (2006). Peptide aptamers that bind to a geminivirus replication protein interfere with viral replication in plant cells. Journal of Virology, 80(12), 5841–5853. https://doi.org/10.1128/JVI.02698-05

Song, H. E., Kirmaier, C., Schwartz, J. K., Hindin, E., Yu, L. H., Bocian, D. F., … Holten, D. (2006). Mechanisms, pathways, and dynamics of excited-state energy flow in self-assembled wheel-and-spoke light-harvesting architectures. Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 110(39), 19121–19130. https://doi.org/10.1021/jp064000i

Lobo, R. G., Bitzer, D. L., & Vouk, M. A. (2006). Locally invertible multivariate polynomial matrices. Lecture Notes in Computer Science, (3969), 427–441.

Josserand, S. A., Potter, K. M., Johnson, G., Bowen, J. A., Frampton, J., & Nelson, C. D. (2006). Isolation and characterization of microsatellite markers in Fraser fir (Abies fraseri). Molecular Ecology Notes, 6(1), 65–68. https://doi.org/10.1111/j.1471-8286.2005.01138.x

Li, H., Amerson, H., & Li, B. L. (2006). Genetic models of host-pathogen gene interaction based on inoculation of loblolly pine seedlings with the fusiform rust fungus. New Forests, 31(2), 245–252. https://doi.org/10.1007/s11056-005-6576-8

Birkenheuer, A. J., Le, J. A., Valenzisi, A. M., Tucker, M. D., Levy, M. G., & Breitschwerdt, E. B. (2006). Cytauxzoon felisinfection in cats in the mid-Atlantic states: 34 cases (1998–2004). Journal of the American Veterinary Medical Association, 228(4), 568–571. https://doi.org/10.2460/javma.228.4.568

Chung, R. H., Hauser, E. R., & Martin, E. R. (2006). The APL test: Extension to general nuclear families and haplotypes and examination of its robustness. Human Heredity, 61(4), 189–199. https://doi.org/10.1159/000094774

Omori, E., Matsumoto, K., Sanjo, H., Sato, S., Akira, S., Smart, R., & Ninomiya-Tsuji, J. (2006). TAK1 is a master regulator of epidermal homeostasis involving skin inflammation and apoptosis. Journal of Biological Chemistry, 281(28), 19610–19617. https://doi.org/10.1074/jbc.M603384200

Lin, J., Zhang, D. W., & Davidian, M. (2006). Smoothing spline-based score tests for proportional hazards models. Biometrics, 62(3), 803–812. https://doi.org/10.1111/j.1541-0420.2005.00521.x

Mudiganti, U., Hernandez, R., Ferreira, D., & Brown, D. T. (2006). Sindbis virus infection of two model insect cell systems - A comparative study. Virus Research, 122(1-2), 28–34. https://doi.org/10.1016/j.virusres.2006.06.007

Lindsey, J. S., Dhanalekshmi, S., Laha, J. K., & Taniguchi, M. (2006). Scalable synthesis of dipyrromethanes. Washington, DC: U.S. Patent and Trademark Office.

Edwards, A. C., Rollmann, S. M., Morgan, T. J., & MacKay, T. F. C. (2006). Quantitative genomics of aggressive behavior in Drosophila melanogaster. PLoS Genetics, 2(9), 1386–1395. https://doi.org/10.1371/journal.pgen.0020154

Yeh, T. F., Braun, J. L., Goldfarb, B., Chang, H. M., & Kadla, J. F. (2006). Morphological and chemical variations between juvenile wood, mature wood, and compression wood of loblolly pine (Pinus taeda L.). Holzforschung, 60(1), 1–8. https://doi.org/10.1515/HF.2006.001

Lindsey, J. S. (2006). Method of making information storage devices by molecular photolithography. Washington, DC: U.S. Patent and Trademark Office.

Parks, E. J., Moyer, J. W., & Lyerly, J. H. (2006). Identification of fluorescent AFLP and SSR markers for differentiation and analysis of New Guinea impatiens. Journal of the American Society for Horticultural Science, 131(5), 622–631.

Donofrio, N. M., Oh, Y., Lundy, R., Pan, H., Brown, D. E., Jeong, J. S., … Dean, R. A. (2006). Global gene expression during nitrogen starvation in the rice blast fungus, Magnaporthe grisea. Fungal Genetics and Biology, 43(9), 605–617. https://doi.org/10.1016/j.fgb.2006.03.005

Olivry, T., Lavoy, A., Dunston, S. M., Brown, R. S., Lennon, E. M., Warren, S. J., … Dean, G. A. (2006). Desmoglein-1 is a minor autoantigen in dogs with pemphigus foliaceus. Veterinary Immunology and Immunopathology, 110(3-4), 245–255. https://doi.org/10.1016/j.vetimm.2005.10.002

Taylor, T. V., Mitchell, T. K., & Daub, M. E. (2006). An oxidoreductase is involved in cercosporin degradation by the bacterium Xanthomonas campestris pv. Zinniae. Applied and Environmental Microbiology, 72(9), 6070–6078. https://doi.org/10.1128/AEM.00483-06

Laha, J. K., Muthiah, C., Taniguchi, M., & Lindsey, J. (2006). A new route for installing the isocyclic ring on chlorins yielding 13(1)-oxophorbines. Journal of Organic Chemistry, 71(18), 7049–7052. https://doi.org/10.1021/jo0608265

Heldt, C. L., Hernandez, R., Mudiganti, U., Gurgel, P. V., Brown, D. T., & Carbonell, R. G. (2006). A  colorimetric assay for viral agents that produce cytopathic effects. Journal of Virological Methods, 135(1), 56–65. https://doi.org/10.1016/j.j.viromet.2006.01.022

Ehrenreich, I. M., & Purugganan, M. D. (2006). [Review of The  molecular genetic basis of plant adaptation]. American Journal of Botany, 93(7), 953–962.

Huang, W. C., Umbach, D. M., Ohler, U., & Li, L. P. (2006). Optimized mixed Markov models for motif identification. BMC Bioinformatics, 7.

Breitschwerdt, E. B., & Sontakke, S. (2006). Media and methods for cultivation of microorganisms. Washington, DC: U.S. Patent and Trademark Office.

Filichkin, S. A., Wu, Q., Busov, V., Meilan, R., Lanz-Garcia, C., Groover, A., … Strauss, S. H. (2006). Enhancer trapping in woody plants: Isolation of the ET304 gene encoding a putative AT-hook motif transcription factor and characterization of the expression patterns conferred by its promoter in transgenic Populus and Arabidopsis. Plant Science, 171(2), 206–216. https://doi.org/10.1016/j.plantsci.2006.03.011

Song, H. E., Kirmaier, C., Schwartz, J. K., Hindin, E., Yu, L. H., Bocian, D. F., … Holten, D. (2006). Effects of multiple pathways on excited-state energy flow in self-assembled wheel-and-spoke light-harvesting architectures. Journal of Physical Chemistry. B, Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, 110(39), 19131–19139. https://doi.org/10.1021/jp064001a

Lysenko, A. B., Thamyongkit, P., Schmidt, I., Diers, J. R., Bocian, D. F., & Lindsey, J. (2006). Diverse porphyrin dimers as candidates for high-density charge-storage molecules. Journal of Porphyrins and Phthalocyanines, 10(1), 22–32. https://doi.org/10.1142/S1088424606000041

Chomel, B. B., Boulouis, H.-J., Maruyama, S., & Breitschwerdt, E. B. (2006). BartonellaSpp. in Pets and Effect on Human Health. Emerging Infectious Diseases, 12(3), 389–394. https://doi.org/10.3201/eid1203.050931

Wang, T., Weir, B., & Zeng, Z. B. (2006). A population-based latent variable approach for association mapping of quantitative trait loci. Annals of Human Genetics, 70, 506–523. https://doi.org/10.1111/j.1469-1809.2006.00264.x

Waterman, J. T., Bird, D. M. K., & Opperman, C. H. (2006). A method for isolation of Pasteuria penetrans endospores for bioassay and genomic studies. Journal of Nematology, 38(1), 165–167. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-34248330929&partnerID=MN8TOARS

Padmaja, K., Youngblood, W. J., Wei, L. Y., Bocian, D. F., & Lindsey, J. (2006). Triple-decker sandwich compounds bearing compact triallyl tripods for molecular information storage applications. Inorganic Chemistry, 45(14), 5479–5492. https://doi.org/10.1021/ic060387s

Chen, Y. R., & Clark, A. C. (2006). Substitutions of prolines examine their role in kinetic trap formation of the caspase recruitment domain (CARD) of RICK. Protein Science, 15(3), 395–409. https://doi.org/10.1110/ps.051943006

Jiao, J., Anariba, F., Tiznado, H., Schmidt, I., Lindsey, J., Zaera, F., & Bocian, D. F. (2006). Stepwise formation and characterization of covalently linked multiporphyrin-imide architectures on Si(100). Journal of the American Chemical Society, 128(21), 6965–6974. https://doi.org/10.1021/ja060906q

Olsen, K. M., Caicedo, A. L., Polato, N., McClung, A., McCouch, S., & Purugganan, M. D. (2006). Selection under domestication: Evidence for a sweep in the rice Waxy genomic region. Genetics, 173(2), 975–983. https://doi.org/10.1534/genetics.106.056473

Sherman, M. B., Guenther, R. H., Tama, F., Sit, T. L., Brooks, C. L., Mikhailov, A. M., … Lommel, S. A. (2006). Removal of divalent cations induces structural transitions in Red clover necrotic mosaic virus, revealing a potential mechanism for RNA release. Journal of Virology, 80(21), 10395–10406. https://doi.org/10.1128/JVI.01137-06

Franzen, S., Belyea, J., Gilvey, L. B., Davis, M. F., Chaudhary, C. E., Sit, T. L., & Lommel, S. A. (2006). Proximal cavity, distal histidine, and substrate hydrogen-bonding mutations modulate the activity of Amphitrite ornata dehaloperoxidase. Biochemistry, 45(30), 9085–9094. https://doi.org/10.1021/bi060020z

Rollmann, S. M., Magwire, M. M., Morgan, T. J., Ozsoy, E. D., Yamamoto, A., Mackay, T. F. C., & Anholt, R. R. H. (2006). Pleiotropic fitness effects of the Tre1-Gr5a region in Drosophila melanogaster. Nature Genetics, 38(7), 824–829. https://doi.org/10.1038/ng1823

Zaidi, S. H. H., Loewe, R. S., Clark, B. A., Jacob, M. J., & Lindsey, J. (2006). Nearly chromatography-free synthesis of the A(3)B-porphyrin 5-(4-hydroxymethylphenyl)-10,15,20-tri-p-tolylporphinatozinc(II). Organic Process Research & Development, 10(2), 304–314. https://doi.org/10.1021/op0502553

Li, J., Wang, S. C., & Zeng, Z. B. (2006). Multiple-interval mapping for ordinal traits. Genetics, 173(3), 1649–1663. https://doi.org/10.1534/genetics.105.054619

Birkenheuer, A. J., Whittington, J., Neel, J., Large, E., Barger, A., Levy, M. G., & Breitschwerdt, E. (2006). Molecular characterization of a Babesia species identified in a North American raccoon. Journal of Wildlife Diseases, 42(2), 375–380. https://doi.org/10.7589/0090-3558-42.2.375

Bhaumik, J., Yao, Z., Borbas, K. E., Taniguchi, M., & Lindsey, J. (2006). Masked imidazolyl-dipyrromethanes in the synthesis of imidazole-substituted porphyrins. Journal of Organic Chemistry, 71(23), 8807–8817. https://doi.org/10.1021/jo061461r

Wilson, R. H., Morgan, T. J., & MacKay, T. F. C. (2006). High-resolution mapping of quantitative trait loci affecting increased life span in Drosophila melanogaster. Genetics, 173(3), 1455–1463. https://doi.org/10.1534/genetics.105.055111

Zufall, R. A., McGrath, C. L., Muse, S. V., & Katz, L. A. (2006). Genome architecture drives protein evolution in ciliates. Molecular Biology and Evolution, 23(9), 1681–1687. https://doi.org/10.1093/molbev/msl032

Eddlestone, S. M., Neer, T. M., Gaunt, S. D., Corstvet, R., Gill, A., Hosgood, G., … Breitschwerdt, E. B. (2006). Failure of imidocarb dipropionate to clear experimentally induced Ehrlichia canis infection in dogs. Journal of Veterinary Internal Medicine, 20(4), 840–844.

Alizoti, P. G., Li, B. L., & McKeand, S. E. (2006). Early evaluation of intra- and inter-provenance hybrids of loblolly pine for planting in piedmont regions of the southern United States. Forest Science, 52(5), 557–567.

LeBude, A. V., Goldfarb, B., Blazich, F. A., Wright, J. A., Cazell, B., Wise, F. C., & Frampton, J. (2006). Container type and volume influences adventitious rooting and subsequent field growth of stem cuttings of loblolly pine. Southern Journal of Applied Forestry, 30(3), 123–131.

Sebaihia, M., & Orndorff, P. E. (2006). Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B-bronchiseptica, B-pertussis, and B-parapertussis reveals extensive diversity in surface structures associated with host interaction. Journal of Bacteriology, 188(16), 6002–6015.

Mellor, P. J., Fetz, K., Maggi, R. G., Haugland, S., Dunning, M., Villiers, E. J., … Herrtage, M. E. (2006). Alpha1-proteinase inhibitor deficiency and Bartonella infection in association with panniculitis, polyarthritis, and meningitis in a dog. Journal of Veterinary Internal Medicine, 20(4), 1023–1028.

Solano-Gallego, L., Llull, J., Osso, M., Hegarty, B., & Breitschwerdt, E. (2006). A serological study of exposure to arthropod-borne pathogens in dogs from northeastern Spain. Veterinary Research, 37(2), 231–244. https://doi.org/10.1051/vetres:2005054

Snyder, D. W., Opperman, C. H., & Bird, D. M. K. (2006). A method for generating Meloidogyne incognita males. Journal of Nematology, 38(2), 192–194. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-33750134280&partnerID=MN8TOARS

Thamlyongkit, P., Yu, L. H., Padmaja, K., Jiao, J. Y., Bocian, D. F., & Lindsey, J. (2006). Porphyrin dyads bearing carbon tethers for studies of high-density molecular charge storage on silicon surfaces. Journal of Organic Chemistry, 71(3), 1156–1171. https://doi.org/10.1021/jo0522761

Zaidi, S. H. H., Fico, R. M., & Lindsey, J. (2006). Investigation of streamlined syntheses of porphyrins bearing distinct meso substituents. Organic Process Research & Development, 10(1), 118–134. https://doi.org/10.1021/op050193g

Afonina, G., Leduc, I., Nepluev, I., Jeter, C., Routh, P., Almond, G., … Elkins, C. (2006). Immunization with the Haemophilus ducreyi hemoglobin receptor HgbA protects against infection in the swine model of chancroid. Infection and Immunity, 74(4), 2224–2232. https://doi.org/10.1128/IAI.74.4.2224-2232.2006

Hess, P., English, R. V., Hegarty, B. C., Brown, G. D., & Breitschwerdt, E. (2006). Experimental Ehrlichia canis infection in the dog does not cause immunosuppression. Veterinary Immunology and Immunopathology, 109(1-2), 117–125. https://doi.org/10.1016/j.vetimm.2005.07.027

O'Connor, T. P., Hanscom, J. L., Hegarty, B. C., Groat, R. G., & Breitschwerdt, E. B. (2006). Comparison of an indirect immunofluorescence assay, western blot analysis, and a commercially available ELISA for detection ofEhrlichia canisantibodies in canine sera. American Journal of Veterinary Research, 67(2), 206–210. https://doi.org/10.2460/ajvr.67.2.206

Thamyongkit, P., Bhise, A. D., Taniguchi, M., & Lindsey, J. (2006). Alkylthio unit as an alpha-pyrrole protecting group for use in dipyrromethane synthesis. Journal of Organic Chemistry, 71(3), 903–910. https://doi.org/10.1021/jo051806q

Chen, J., Griffey, C. A., Maroof, M. A. S., Stromberg, E. L., Biyashev, R. M., Zhao, W., … Zeng, Z. (2006). Validation of two major quantitative trait loci for fusarium head blight resistance in Chinese wheat line W14. Plant Breeding, 125(1), 99–101. https://doi.org/10.1111/j.1439-0523.2006.01182.x

Sterneck, E., Zhu, S., Ramirez, A., Jorcano, J. L., & Smart, R. (2006). Conditional ablation of C/EBP beta demonstrates its keratinocyte-specific requirement for cell survival and mouse skin tumorigenesis. Oncogene, 25(8), 1272–1276. https://doi.org/10.1038/sj.onc.1209144

May, E. E., Vouk, M. A., & Bitzer, D. L. (2006). Classification of Escherichia coli K-12 ribosome binding sites. IEEE Engineering in Medicine and Biology Magazine, 25(1), 90–97. https://doi.org/10.1109/memb.2006.1578668

Basnayake, V. R., Sit, T. L., & Lommel, S. A. (2006). The genomic RNA packaging scheme of Red clover necrotic mosaic virus. Virology, 345(2), 532–539. https://doi.org/10.1016/j.virol.2005.10.017

Khanna, C., Lindblad-Toh, K., Vail, D., London, C., Bergman, P., Barber, L., … Withrow, S. (2006). The dog as a cancer model. https://doi.org/10.1038/nbt0906-1065b

Avila-Adame, C., Gómez-Alpizar, L., Zismann, V., Jones, K. M., Buell, C. R., & Ristaino, J. (2006). Mitochondrial genome sequences and molecular evolution of the Irish potato famine pathogen, Phytophthora infestans. Current Genetics, 49(1), 39–46. https://doi.org/10.1007/s00294-005-0016-3

Li, H., Ghosh, S., Amerson, H., & Li, B. L. (2006). Major gene detection for fusiform rust resistance using Bayesian complex segregation analysis in loblolly pine. Theoretical and Applied Genetics, 113(5), 921–929. https://doi.org/10.1007/s00122-006-0351-x

Perera, I. Y., Hung, C. Y., Brady, S., Muday, G. K., & Boss, W. F. (2006). A universal role for inositol 1,4,5-trisphosphate-mediated signaling in plant gravitropism. Plant Physiology, 140(2), 746–760. https://doi.org/10.1104/pp.105.075119

Bollinger, R. R., Everett, M. L., Wahl, S. D., Lee, Y. H., Orndorff, P. E., & Parker, W. (2006). Secretory IgA and mucin-mediated biofilm formation by environmental strains of Escherichia coli: role of type 1 pili. Molecular Immunology, 43(4), 378–387. https://doi.org/10.1016/j.molimm.2005.02.013

Morgan, T. J., & Mackay, T. F. C. (2006). Quantitative trait loci for thermotolerance phenotypes in Drosophila melanogaster. Heredity, 96(3), 232–242. https://doi.org/10.1038/sj.hdy.6800786

Feeney, B., Soderblom, E. J., Goshe, M. B., & Clark, A. C. (2006). Novel protein purification system utilizing an N-terminal fusion protein and a caspase-3 cleavable linker. Protein Expression and Purification, 47(1), 311–318. https://doi.org/10.1016/j.pep.2005.10.005

Breitschwerdt, E. B. (2006). Vector-borne diseases: What you don't know can kill you, your clients, or your patients. Compendium on Continuing Education for the Practicing Veterinarian, 28(3), 1–5.

Miller, S. R., Purugganan, M. D., & Curtis, S. E. (2006). Molecular population genetics and phenotypic diversification of two populations of the thermophilic cyanobacterium Mastigocladus laminosus. Applied and Environmental Microbiology, 72(4), 2793–2800. https://doi.org/10.1128/AEM.72.4.2793-2800.2006

Moorefield, K. S., Yin, H. F., Nichols, T. D., Cathcart, C., Simmons, S. O., & Horowitz, J. M. (2006). Sp2 localizes to subnuclear foci associated with the nuclear matrix. Molecular Biology of the Cell, 17(4), 1711–1722. https://doi.org/10.1091/mbc.E05-11-1063

Dowd, P. F., Holmes, R. A., Pinkerton, T. S., Johnson, E. T., Lagrimini, L. M., & Boston, R. S. (2006). Relative activity of a tobacco hybrid expressing high levels of a tobacco anionic peroxidase and maize ribosome-inactivating protein against Helicoverpa zea and Lasioderma serricorne. Journal of Agricultural and Food Chemistry, 54(7), 2629–2634. https://doi.org/10.1021/jf058180p

Birkenheuer, A. J., Marr, H., Alleman, A. R., Levy, M. G., & Breitschwerdt, E. (2006). Development and evaluation of a PCR assay for the detection of Cytauxzoon felis DNA in feline blood samples. Veterinary Parasitology, 137(1-2), 144–149. https://doi.org/10.1016/j.vetpar.2005.12.007

Loo, L., Guenther, R. H., Basnayake, V. R., Lommel, S. A., & Franzen, S. (2006). Controlled encapsidation of gold nanoparticles by a viral protein shell. Journal of the American Chemical Society, 128(14), 4502–4503. https://doi.org/10.1021/ja057332u

Whitehurst, C. B., Willis, J. H., Sinodis, C. N., Hernandez, R., & Brown, D. T. (2006). Single and multiple deletions in the transmembrane domain of the Sindbis virus E2 glycoprotein identify a region critical for normal virus growth. Virology, 347(1), 199–207. https://doi.org/10.1016/j.virol.2005.11.029

Leips, J., Gilligan, P., & Mackay, T. F. C. (2006). Quantitative trait loci with age-specific effects on fecundity in Drosophila melanogaster. Genetics, 172(3), 1595–1605. https://doi.org/10.1534/genetics.105.048520

Schmidt, I., Jiao, J. Y., Thamyongkit, P., Sharada, D. S., Bocian, D. F., & Lindsey, J. (2006). Investigation of stepwise covalent synthesis on a surface yielding porphyrin-based multicomponent architectures. Journal of Organic Chemistry, 71(8), 3033–3050. https://doi.org/10.1021/jo052650x

Sharp, J. S., Nelson, S., Brown, D., & Tomer, K. B. (2006). Structural characterization of the E2 glycoprotein from Sindbis by lysine biotinylation and LC-MS/MS. Virology, 348(1), 216–223. https://doi.org/10.1016/j.virol.2005.12.020

McCarter, J. P., Bird, D. M., & Mitreva, M. (2006). Nematode gene sequences: Update for December 2005. Journal of Nematology, 37(4), 417–421.

Bird, D. M., Blaxter, M. L., McCarter, J. P., Mitreva, M., Sternberg, P. W., & Thomas, W. K. (2006). A white paper on nematode comparative genomics. Journal of Nematology, 37(4), 408–416.

West, J., Hernandez, R., Ferreira, D., & Brown, D. T. (2006). Mutations in the endodomain of Sindbis virus glycoprotein E2 define sequences critical for virus assembly. Journal of Virology, 80(9), 4458–4468. https://doi.org/10.1128/jvi.80.9.4458-4468.2006

Laha, J. K., Muthiah, C., Taniguchi, M., McDowell, B. E., Ptaszek, M., & Lindsey, J. (2006). Synthetic chlorins bearing auxochromes at the 3-and 13-positions. Journal of Organic Chemistry, 71(11), 4092–4102. https://doi.org/10.1021/jo060208o

Ptaszek, M., Mcdowell, B. E., & Lindsey, J. (2006). Synthesis of 1-formyldipyrromethanes. Journal of Organic Chemistry, 71(11), 4328–4331. https://doi.org/10.1021/jo060119b

McKeand, S., Jokela, E. J., Huber, D. A., Byram, T. D., Allen, H. L., Li, B. L., & Mullin, T. J. (2006). Performance of improved genotypes of loblolly pine across different soils, climates, and silvicultural inputs. Forest Ecology and Management, 227(1-2), 178–184. https://doi.org/10.1016/j.foreco.2006.02.016

Jackson, S., Rounsley, S., & Purugganan, M. (2006). Comparative sequencing of plant genomes: Choices to make. Plant Cell, 18(5), 1100–1104.

Borbas, K. E., Mroz, P., Hamblin, M. R., & Lindsey, J. (2006). Bioconjugatable porphyrins bearing a compact swallowtail motif for water solubility. Bioconjugate Chemistry, 17(3), 638–653. https://doi.org/10.1021/bc050337w

Fulcher, R. A., Cole, L. E., Janowicz, D. M., Toffer, K. L., Fortney, K. R., Katz, B. P., … Kawula, T. H. (2006). Expression of Haemophilus ducreyi collagen binding outer membrane protein NcaA is required for virulence in swine and human challenge models of chancroid. Infection and Immunity, 74(5), 2651–2658. https://doi.org/10.1128/IAI.74.5.2651-2658.2006

Dean, G. A., Lavoy, A., Yearley, J., & Stanton, C. (2006). Cytokine modulation of the innate immune response in feline immunodeficiency virus - Infected cats. Journal of Infectious Diseases, 193(11), 1520–1527. https://doi.org/10.1086/503873

Gupta, S., Leutenegger, C., Dean, G., & Sparger, E. (2006). Construction and characterization of feline immunodeficiency virus proviral mutants that coexpress interferon gamma and green fluorescent protein. AIDS Research and Human Retroviruses, 22(4), 342–349. https://doi.org/10.1089/aid.2006.22.342

Wang, T., & Zeng, Z. B. (2006). Models and partition of variance for quantitative trait loci with epistasis and linkage disequilibrium. BMC Genetics, 7.

Carbone, M. A., Jordan, K. W., Lyman, R. F., Harbison, S. T., Leips, J., Morgan, T. J., … Mackay, T. F. C. (2006). Phenotypic variation and natural selection at Catsup, a pleiotropic quantitative trait gene in Drosphila. Current Biology, 16(9), 912–919. https://doi.org/10.1016/j.cub.2006.03.051

Kumar, S., Allen, G. C., & Thompson, W. (2006). Gene targeting in plants: fingers on the move. Trends in Plant Science, 11(4), 159–161. https://doi.org/10.1016/j.tplants.2006.02.002

Leontis, N. B., Altman, R. B., Berman, H. M., Brenner, S. E., Brown, J. W., Engelke, D. R., … Westhof, E. (2006). The  RNA Ontology Consortium: An open invitation to the RNA community. RNA, 12(4), 533–541. https://doi.org/10.1261/rna.2343206

Tu, C., Ristaino, J., & Hu, S. (2006). Soil microbial biomass and activity in organic tomato farming systems: Effects of organic inputs and straw mulching. Soil Biology and Biochemistry, 38(2), 247–255. https://doi.org/10.1016/j.soilbio.2005.05.002

Frahm, J. L., Howard, B. E., Heber, S., & Muddiman, D. C. (2006). Accessible proteomics space and its implications for peak capacity for zero-, one- and two-dimensional separations coupled with FT-ICR and TOF mass spectrometry. Journal of Mass Spectrometry, 41(3), 281–288. https://doi.org/10.1002/jms.1024

Maggi, R., Chomel, B., Hegarty, B. C., Henn, J., & Breitschwerdt, E. (2006). A  Bartonella vinsonii berkhoffii typing scheme based upon 16S-23S ITS and Pap31 sequences from dog, coyote, gray fox, and human isolates. Molecular and Cellular Probes, 20(2), 128–134. https://doi.org/10.1016/j.mcp.2005.11.002

Huang, W. C., Umbach, D. M., & Li, L. P. (2006). Accurate anchoring alignment of divergent sequences. Bioinformatics, 22(1), 29–34. https://doi.org/10.1093/bioinformatics/bti772

Orndorff, P. E., Hamrick, T. S., Smoak, I. W., & Havell, E. A. (2006). Host and bacterial factors in listeriosis pathogenesis. Veterinary Microbiology, 114(1-2), 1–15. https://doi.org/10.1016/j.vetmic.2005.12.003