Genomic Sciences - 2007

Kaltofen, E., Li, B., Sivaramakrishnan, K., Yang, Z., & Zhi, L. (2007). Lower bounds for approximate factorizations via semidefinite programming. In J. Verschelde & S. M. Watt (Eds.), Proceedings of the 2007 International Workshop on Symbolic-Numeric Computation (SNC '07) (pp. 203–204). New York, NY: ACM Press.

Modiano, J. F., Breen, M., Valli, V. E. O., Wojcieszyn, J. W., & Cutter, G. R. (2007). Predictive value of p16 or Rb inactivation in a model of naturally occurring canine non-Hodgkin's lymphoma. Leukemia, 21(1), 184–187. https://doi.org/10.1038/sj.leu.2404392

Davidow, L. S., Breen, M., Duke, S. E., Samollow, P. B., McCarrey, J. R., & Lee, J. T. (2007). The search for a marsupial XIC reveals a break with vertebrate synteny. Chromosome Research, 15(2), 137–146. https://doi.org/10.1007/s10577-007-1121-6

Gaunt, S. D., Ramaswamy, C., Beall, M., Caterina, K., & Breitschwerdt, E. (2007). Potentiation of thrombocytopenia and anemia in dogs experimentally coinfected with anaplasma platys and ehrlichia canis. Journal of Veterinary Internal Medicine, 21(3), 576.

Daniluk, D., Shiuenwhite, J., O'Connor, T., Yabsley, M., Adams, D. S., Diniz, P., … Chandrashekar, R. (2007). Preliminary evaluation of a peptide-based assay for detection of ehrlichia ewingh antibodies in experimentally and naturally-infected dogs. Journal of Veterinary Internal Medicine, 21(3), 625.

Diniz, P. P. V. P., Beall, M., Chandrashekarl, R., Daniluk, D., Cyr, K., Koterski, J. F., … Breitschwerdt, E. B. (2007). Pathogens in rhipicephalus sanguineus infested dogs from the southwestern united states. Journal of Veterinary Internal Medicine, 21(3), 625.

Stamps, J. B., & Ristaino, J. (2007). Grace Marion Waterhouse (1906 – 1996), Phytophthora systematist and taxonomist. In J. B. Ristaino (Ed.), Pioneering Women in Plant Pathology (pp. 143–153). St Paul, MN: APS Press.

Ristaino, J., & Peterson, P. (2007). Effie A. Southworth (1860-1947), First Woman Plant Pathologist Hired at the United States Department of Agriculture. In J. B. Ristaino (Ed.), Pioneering Women in Plant Pathology (pp. 19–27). St Paul, MN: APS Press.

Ristaino, J. (2007). Pioneering Women in Plant Pathology. St. Paul, Minnesota: APS Press.

Li, E., Zhang, D., & Davidian, M. (2007). Likelihood and pseudo-likelihood methods for semiparametric joint models for a primary endpoint and longitudinal data. Computational Statistics & Data Analysis, 51(12), 5776–5790. https://doi.org/10.1016/j.csda.2006.10.008

Zolda, P., & Háněl, L. (2007). Soil nematodes inhabiting an original dry meadow and an abandoned vineyard in the National Park Seewinkel, Eastern Austria. Helminthologia, 44(3), 112–117.

Zody, M. C., Jiang, R. H. Y., Handsaker, R., Grabherr, M., Kodira, C. D., Govers, F., … others. (2007). Genome dynamics in the pathogen/host arms race: initial analysis of the Phytophthora infestans genome. American Phytopathological Society Annual Meeting, San Diego, California, USA, S146.

Blanco-Meneses, M., Carbone, I., & Ristaino, J. (2007). Genetic structure of populations of the tobacco blue mold pathogen, Peronospora tabacina in North America, Central America, the Caribbean and Europe. PHYTOPATHOLOGY, 97(7), S11–S11.

Reanprayoon, P., Pathomsiriwong, W., Abdulla, H. M., El-Shatoury, S., Alves-Prado, H. F., Pavezzi, F. C., … others. (2007). Effects of soil solarization and Trichoderma on strawberry production. Journal of Applied Sciences, 12(18), 850–853.

Ristaino, J., Hu, C., & Fitt, B. (2007). Phytophthora infestans identified in archival potato tubers from Hoosfield plot trials of Sir John Bennet Lawes and Joseph Gilbert at Rothamsted, 1876-1901. PHYTOPATHOLOGY, 97(7), S99–S99.

Borwein, P., Kaltofen, E., & Mossinghoff, M. J. (2007). Irreducible polynomials and barker sequences. ACM Communications in Computer Algebra, 41(4), 118. https://doi.org/10.1145/1358183.1358185

Kaltofen, E., Yang, Z., & Zhi, L. (2007). Structured Low Rank Approximation of a Sylvester Matrix. In Trends in Mathematics (pp. 69–83). https://doi.org/10.1007/978-3-7643-7984-1_5

Zeng, Z. B. (2007). The Hill–Robertson effect is a consequence of interplay between linkage, selection and drift: a commentary on ‘The effect of linkage on limits to artificial selection’ by W. G. Hill and A. Robertson. Genetics Research, 89(5-6), 309–310. https://doi.org/10.1017/s0016672308009506

Aspinwall, L., & Frampton, J. (2007). Chemical control of leader growth: North Carolina results. American Christmas Tree Journal, 51(2), 20–21.

Frampton, J. (2007). Arboles de navidad en Carolina del Norte, EUA. Boletin De Noticias Camcore Para Mexico y Centroamerica, 1(3), 2–5.

Isik, F., Whetten, R., Garcia, S., Cumbie, P., McKeand, S., Grissom, J., & Batista, T. (2007). Using markers in breeding, testing and selection in loblolly pine: Current and future research. GENECAR Meeting: Application of DNA Based Tools for Genetic Research, Molecular Breeding, Management and Monitoring of Genetic Resources.

Frampton, J., Isik, F., & Braham, A. (2007). Genetic Variation in the Economic Value of Fraser Fir (Abies fraseri) Christmas Trees in North Carolina, USA. Eighth International Christmas Tree Research & Extension Conference IUFRO.

McKeand, S. E., Zobel, B. J., Byram, T. D., & Huber, D. A. (2007). Southern pine tree improvement--a living success story. Proceedings of the 29th Southern Forest Tree Improvement Conference, 3–7.

Isik, F., Whetten, R., Garcia, S., Cumbie, P., McKeand, S., Grissom, J., & Batista, T. (2007). Using markers in breeding, testing and selection
in loblolly pine ? current and future research. Conference Proceedings.

Cumbie, W. P., McKeand, S. E., Espinoza, J., Isik, F., & Grissom, J. E. (2007). Improvements in stem form and growth of elite genotypes in loblolly pine. Proceedings of the 29th Southern Forest Tree Improvement Conference, 108–111.

Rokas, A., Payne, G., Fedorova, N. D., Baker, S. E., Machida, M., Yu, J., … Nierman, W. C. (2007). What can comparative genomics tell us about species concepts in the genus Aspergillus? Studies in Mycology, (59), 11–17. https://doi.org/10.3114/sim.2007.59.02

Riedl, C. A. L., Riedl, M., Mackay, T. F. C., & Sokolowski, M. B. (2007). Genetic and behavioral analysis of natural variation in Drosophila melanogaster pupation position. Fly, 1(1), 23–32. https://doi.org/10.4161/fly.3830

Kulikov, O. V., Schmidt, I., Muresan, A. Z., Lee, M. A. P., Bocian, D. F., & Lindsey, J. (2007). Synthesis of porphyrins for metal deposition studies in molecular information storage applications. Journal of Porphyrins and Phthalocyanines, 11(10), 699–712. https://doi.org/10.1142/S1088424607000801

Yearley, J. H., Stanton, C., Olivry, T., & Dean, G. A. (2007). Phagocytic plasmacytoma in a dog. Veterinary Clinical Pathology, 36(3), 293–296. https://doi.org/10.1111/j.1939-165X.2007.tb00228.x

Misra, V., Bocian, D., Kuhr, W., & Lindsey, J. (2007). In situ patterning of electrolyte for molecular information storage devices. Washington, DC: U.S. Patent and Trademark Office.

Conkling, M. A., Song, W., & Mendu, N. (2007). Regulation of quinolate phosphoribosyl transferase expression. Washington, DC: U.S. Patent and Trademark Office.

Chinnasamy, M., Ptaszek, M., Nguyen, T. M., Flack, K. M., & Lindsey, J. (2007). Two complementary routes to 7-substituted chlorins. Partial mimics of chlorophyll b. Journal of Organic Chemistry, 72(20), 7736–7749. https://doi.org/10.1021/jo701500d

Yao, Z., Bhaumik, J., Dhanalekshmi, S., Ptaszek, M., Rodriguez, P. A., & Lindsey, J. (2007). Synthesis of porphyrins bearing 1-4 hydroxymethyl groups and other one-carbon oxygenic substituents in distinct patterns. Tetrahedron, 63(43), 10657–10670. https://doi.org/10.1016/j.tet.2007.07.108

Dogutan, D. K., Zaidi, S. H. H., Thamyongkit, P., & Lindsey, J. (2007). New route to ABCD-porphyrins via bilanes. Journal of Organic Chemistry, 72(20), 7701–7714. https://doi.org/10.1021/jo701294d

Bocian, D. F., Lindsey, J., Liu, Z., Yesseri, A. A., Misra, V., Zhao, Q., … Loewe, R. S. (2007). High temperature attachment of organic molecules to substrates. Washington, DC: U.S. Patent and Trademark Office.

Nordone, S. K., Ignacio, G. A., Su, L. S., Sempowski, G. D., Golenbock, D. T., Li, L. W., & Dean, G. A. (2007). Failure of TLR4-driven NF-kappa B activation to stimulate virus replication in models of HIV type 1 activation. AIDS Research and Human Retroviruses, 23(11), 1387–1395. https://doi.org/10.1089/aid.2007.0033

Ptaszek, M., Yao, Z., Savithri, D., Boyle, P. D., & Lindsey, J. (2007). Synthesis and structural properties of porphyrin analogues of bacteriochlorophyll c. Tetrahedron, 63(51), 12629–12638. https://doi.org/10.1016/j.tet.2007.10.023

Muthiah, C., Taniguchi, M., Kim, H. J., Schmidt, I., Kee, H. L., Holten, D., … Lindsey, J. (2007). Synthesis and photophysical characterization of porphyrin, chlorin and bacteriochlorin molecules bearing tethers for surface attachment. Photochemistry and Photobiology, 83(6), 1513–1528. https://doi.org/10.1111/j.1751-1097.2007.00195.x

Velho, P. E. N. F., Pimentel, V., Negro, G. M. B. D., Okay, T. S., Diniz, P. P. V. de P., & Breitschwerdt, E. B. (2007). Severe Anemia, Panserositis, and Cryptogenic Hepatitis in an HIV Patient Infected withBartonella henselae. Ultrastructural Pathology, 31(6), 373–377. https://doi.org/10.1080/01913120701696601

Mei, H., Cuccaro, M. L., & Martin, E. R. (2007). Multifactor dimensionality reduction-phenomics: A novel method to capture genetic heterogeneity with use of phenotypic variables. American Journal of Human Genetics, 81(6), 1251–1261. https://doi.org/10.1086/522307

He, Z. M., Price, M. S., O'Brian, G. R., Georgianna, D. R., & Payne, G. A. (2007). Improved protocols for functional analysis in the pathogenic fungus Aspergillus flavus. BMC Microbiology, 7. https://doi.org/10.1186/1471-2180-7-104

Cadenas, M. B., Maggi, R., Diniz, P. P. V. P., Breitschwerdt, K. T., Sontakke, S., & Breithschwerdt, E. B. (2007). Identification of bacteria from clinical samples using Bartonella alpha-Proteobacteria growth medium. Journal of Microbiological Methods, 71(2), 147–155. https://doi.org/10.1016/j.mimet.2007.08.006

Tzeng, J. Y., & Zhang, D. (2007). Haplotype-based association analysis via variance-components score test. American Journal of Human Genetics, 81(5), 927–938. https://doi.org/10.1086/521558

Lawton-Rauh, A., Robichaux, R. H., & Purugganan, M. D. (2007). Diversity and divergence patterns in regulatory genes suggest differential gene flow in recently derived species of the Hawaiian silversword alliance adaptive radiation (Asteraceae). Molecular Ecology, 16(19), 3995–4013. https://doi.org/10.1111/j.1365-294X.2007.03445.x

Lahaye, D., Muthukumaran, K., Hung, C. H., Gryko, D., Reboucas, J. S., Spasojevic, I., … Lindsey, J. (2007). Design and synthesis of manganese porphyrins with tailored lipophilicity: Investigation of redox properties and superoxide dismutase activity. Bioorganic & Medicinal Chemistry, Vol. 15, pp. 7066–7086. https://doi.org/10.1016/j.bmc.2007.07.015

Diniz, P. P. V. D., Maggi, R., Schwartz, D. S., Cadenas, M. B., Bradley, J. M., Hegarty, B., & Breitschwerdt, E. (2007). Canine bartonellosis: serological and molecular prevalence in Brazil and evidence of co-infection with Bartonella henselae and Bartonella vinsonii subsp berkhoffii. Veterinary Research, 38(5), 697–710. https://doi.org/10.1051/vetres:2007023

Quan, H., Zhang, D., Zhang, J., & Devlamynck, L. (2007). Analysis of a binary composite endpoint with missing data in components. Statistics in Medicine, 26(26), 4703–4718. https://doi.org/10.1002/sim.2893

Zhang, X. Y., Wasinger, E. C., Muresan, A. Z., Attenkofer, K., Jennings, G., Lindsey, J., & Chen, L. X. (2007). Ultrafast stimulated emission and structural dynamics in nickel porphyrins. Journal of Physical Chemistry. A, Molecules, Spectroscopy, Kinetics, Environment & General Theory, 111(46), 11736–11742. https://doi.org/10.1021/jp0751763

Adomas, A., Heller, G., Li, G. S., Olson, A., Chu, T. M., Osborne, J., … Asiegbu, F. O. (2007). Transcript profiling of a conifer pathosystem: response of Pinus sylvestris root tissues to pathogen (Heterobasidion annosum) invasion. Tree Physiology, 27(10), 1441–1458. https://doi.org/10.1093/treephys/27.10.1441

Wang, G. B., Hernandez, R., Weninger, K., & Brown, D. T. (2007). Infection of cells by Sindbis virus at low temperature. Virology, 362(2), 461–467. https://doi.org/10.1016/j.virol.2006.12.036

Arguello-Astorga, G., Ascencio-Ibanez, J. T., Dallas, M. B., Orozco, B. M., & Hanley-Bowdoin, L. (2007). High-frequency reversion of geminivirus replication protein mutants during infection. Journal of Virology, 81(20), 11005–11015. https://doi.org/10.1128/JVI.00925-07

Loo, L., Guenther, R. H., Lommel, S. A., & Franzen, S. (2007). Encapsidation of nanoparticies by Red Clover Necrotic Mosaic Virus. Journal of the American Chemical Society, 129(36), 11111–11117. https://doi.org/10.1021/ja071896b

Kee, H. L., Kirmaier, C., Tang, G., Diers, J. R., Muthiah, C., Taniguchi, M., … Hoten, D. (2007). Effects of substituents on synthetic analogs of chlorophylls. Part 2: Redox properties, optical spectra and electronic structure. Photochemistry and Photobiology, 83(5), 1125–1143. https://doi.org/10.1111/j.1751-1097.2007.00151.x

Kee, H. L., Kirmaier, C., Tang, Q., Diers, J. R., Muthiah, C., Taniguchi, M., … Holten, D. (2007). Effects of substituents on synthetic analogs of chlorophylls. Part 1: Synthesis, vibrational properties and excited-state decay characteristics. Photochemistry and Photobiology, 83(5), 1110–1124. https://doi.org/10.1111/j.1751-1097.2007.00150.x

Orton, S. M., Arasu, P., & Hammerberg, B. (2007). A novel gene from Brugia sp that encodes a cytotoxic fatty acid binding protein allergen recognized by canine monoclonal IgE and serum IgE from infected dogs. Journal of Parasitology, 93(6), 1378–1387. https://doi.org/10.1645/GE-1217.1

Kisseberth, W. C., Nadella, M. V. P., Breen, M., Thomas, R., Duke, S. E., Murahari, S., … Rosol, T. J. (2007). A novel canine lymphoma cell line: A translational and comparative model for lymphoma research. Leukemia Research, 31(12), 1709–1720. https://doi.org/10.1016/j.leukres.2007.04.003

Gonzalez, E., Danehower, D., & Daub, M. E. (2007). Vitamer levels, stress response, enzyme activity, and gene regulation of Arabidopsis lines mutant in the pyridoxine/pyridoxamine 5 '-phosphate oxidase (PDX3) and the pyridoxal kinase (SOS4) genes involved in the vitamin B-6 salvage pathway. Plant Physiology, 145(3), 985–996. https://doi.org/10.1104/pp.107.105189

Melchinger, A. E., Utz, H. F., Piepho, H. P., Zeng, Z. B., & Schon, C. C. (2007). The role of epistasis in the manifestation of heterosis: A systems-oriented approach. Genetics, 177(3), 1815–1825. https://doi.org/10.1534/genetics.107.077537

de Paiva Diniz, P. P. V., Schwartz, D. S., de Morais, H. S. A., & Breitschwerdt, E. B. (2007). Surveillance for Zoonotic Vector-Borne Infections Using Sick Dogs from Southeastern Brazil. Vector-Borne and Zoonotic Diseases, 7(4), 689–698. https://doi.org/10.1089/vbz.2007.0129

Ellis, J. C., Barnes, J., & Brown, J. W. (2007). Is Alba an RNase P subunit? RNA Biology, 4(3), 169–172. https://doi.org/10.4161/rna.4.3.5347

Moser, J. M., Carbone, I., Arasu, P., & Gibson, G. (2007). Impact of population structure on genetic diversity of a potential vaccine target in the canine hookworm (Ancylostoma caninum). Journal of Parasitology, 93(4), 796–805. https://doi.org/10.1645/GE-1096R.1

Herrero, S., Amnuaykanjanasin, A., & Daub, M. E. (2007). Identification of genes differentially expressed in the phytopathogenic fungus Cercospora nicotianae between cercosporin toxin-resistant and -susceptible strains. FEMS Microbiology Letters, 275(2), 326–337. https://doi.org/10.1111/j.1574-6968.2007.00903.x

Miranda, L. M., Perugini, L., Srnic, G., Brown-Guedira, G., Marshall, D., Leath, S., & Murphy, J. P. (2007). Genetic mapping of a Triticum monococcum-derived powdery mildew resistance gene in common wheat. Crop Science, 47(6), 2323–2329. https://doi.org/10.2135/cropsci2007.01.0053

Liu, B., Tu, C., Hu, S., Gumpertz, M., & Ristaino, J. (2007). Effect of organic, sustainable, and conventional management strategies in grower fields on soil physical, chemical, and biological factors and the incidence of Southern blight. Applied Soil Ecology, 37(3), 202–214. https://doi.org/10.1016/j.apsoil.2007.06.007

Elling, A. A., Mitreva, M., Recknor, J., Gai, X., Martin, J., Maier, T. R., … Baum, T. J. (2007). Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines. Genome Biology, 8(10). https://doi.org/10.1186/gb-2007-8-10-r211

Billeter, S. A., Blanton, H. L., Little, S. E., Levy, M. G., & Breitschwerdt, E. B. (2007). Detection of “Rickettsia amblyommii” in Association with a Tick Bite Rash. Vector-Borne and Zoonotic Diseases, 7(4), 607–610. https://doi.org/10.1089/vbz.2007.0121

Lindsey, J. S., Muthukumaran, K., Ptaszek, M., & H., Z. S. (2007). Boron complexation strategy for use in manipulating 1-acyldipyrromethanes. Washington, DC: U.S. Patent and Trademark Office.

Zurney, J., Howard, K. E., & Sherry, B. (2007). Basal expression levels of IFNAR and Jak-STAT components are determinants of cell-type-specific differences in cardiac antiviral responses. Journal of Virology, 81(24), 13668–13680. https://doi.org/10.1128/JVI.01172-07

Bocian, D. F., Lindsey, J. S., Liu, Z.-M., Yasseri, A. A., & Loewe, R. S. (2007). Attachment of organic molecules to group III, IV or V substrates. Washington, DC: U.S. Patent and Trademark Office.

Wang, P., Lyman, R. F., Shabalina, S. A., Mackay, T. F. C., & Anholt, R. R. H. (2007). Association of polymorphisms in odorant-binding protein genes with variation in olfactory response to benzaldehyde in Drosophila. Genetics, 177(3), 1655–1665. https://doi.org/10.1534/genetics.107.079731

Yang, R. Q., Gao, H. J., Wang, X., Zhang, J., Zeng, Z. B., & Wu, R. L. (2007). A semiparametric approach for composite functional mapping of dynamic quantitative traits. Genetics, 177(3), 1859–1870. https://doi.org/10.1534/genetics.107.077321

Pfeiler, E. A., & Klaenhammer, T. R. (2007). [Review of The genomics of lactic acid bacteria]. Trends in Microbiology, 15(12), 546–553. https://doi.org/10.1016/j.tim.2007.09.010

Mather, K. A., Caicedo, A. L., Polato, N. R., Olsen, K. M., McCouch, S., & Purugganan, M. D. (2007). The extent of linkage disequilibrium in rice (Oryza sativa L.). Genetics, 177(4), 2223–2232. https://doi.org/10.1534/genetics.107.079616

Lai, C. Q., Leips, J., Zou, W., Roberts, J. F., Wollenberg, K. R., Parnell, L. D., … Mackay, T. F. C. (2007). Speed-mapping quantitative trait loci using microarrays. Nature Methods, 4(10), 839–841. https://doi.org/10.1038/NMETH1084

Smith, C. A., Woloshuk, C. P., Robertson, D., & Payne, G. A. (2007). Silencing of the aflatoxin gene cluster in a diploid strain of Aspergillus flavus is suppressed by ectopic aflR expression. Genetics, 176(4), 2077–2086. https://doi.org/10.1534/genetics.107.073460

Denslow, S. A., Rueschhoff, E. E., & Daub, M. E. (2007). Regulation of the Arabidopsis thaliana vitamin B-6 biosynthesis genes by abiotic stress. Plant Physiology and Biochemistry, 45(2), 152–161. https://doi.org/10.1016/j.plaphy.2007.01.007

Conkling, M., & Li, Y. (2007). Putrescine-n-methyltransferase promoter. Washington, DC: U.S. Patent and Trademark Office.

Conkling, M., & Li, Y. (2007). Plant promoter sequence. Washington, DC: U.S. Patent and Trademark Office.

Kaltofen, E., Yang, Z.-F., & Zhi, L.-H. (2007). On probabilistic analysis of randomization in hybrid symbolic-numeric algorithms. International Workshop on Symbolic-Numeric Computation: Proceedings. New York: ACM Press.

Mikkelsen, T. S., Wakefield, M. J., Aken, B., Amemiya, C. T., Chang, J. L., Duke, S., … Lindblad-Toh, K. (2007). Genome of the marsupial Monodelphis domestica reveals innovation in non-coding sequences. Nature, 447, 167. https://doi.org/10.1038/nature05805

ST Irsigler, A., Costa, M. D., Zhang, P., Ab Reis, P., Dewey, R. E., Boston, R. S., & Fontes, E. P. (2007). Expression profiling on soybean leaves reveals integration of ER- and osmotic-stress pathways. BMC Genomics, 8. https://doi.org/10.1186/1471-2164-8-431

Stromberg, J. R., Marton, A., Kee, H. L., Kirmaier, C., Diers, J. R., Muthiah, C., … Holten, D. (2007). Examination of tethered porphyrin, chlorin, and bacteriochlorin molecules in mesoporous metal-oxide solar cells. Journal of Physical Chemistry. C, 111(42), 15464–15478. https://doi.org/10.1021/jp0749928

Eddlestone, S. M., Diniz, P. P. V. P., Neer, T. M., Gaunt, S. D., Corstvet, R., Cho, D., … Breitschwerdt, E. B. (2007). Doxycycline Clearance of Experimentally Induced Chronic Ehrlichia Canis Infection in Dogs. Journal of Veterinary Internal Medicine, 21(6), 1237–1242. https://doi.org/10.1892/07-061.1

Duncan, A. W., Maggi, R. G., & Breitschwerdt, E. B. (2007). BartonellaDNA in Dog Saliva. Emerging Infectious Diseases, 13(12), 1948–1950. https://doi.org/10.3201/eid1312.070653

Thomas, R., Duke, S. E., Bloom, S. K., Breen, T. E., Young, A. C., Feiste, E., … Breen, M. (2007). A cytogenetically characterized, genome-anchored 10-Mb BAC set and CGH array for the domestic dog. Journal of Heredity, 98(5), 474–484. https://doi.org/10.1093/jhered/esm053

Chen, L. X., Zhang, X. Y., Wasinger, E. C., Attenkofer, K., Jennings, G., Muresan, A. Z., & Lindsey, J. (2007). Tracking electrons and atoms in a photoexcited metalloporphyrin by X-ray transient absorption spectroscopy. Journal of the American Chemical Society, 129(31), 9616–9618. https://doi.org/10.1021/ja072979v

Patel, M., Farzana, L., Robertson, L. K., Hutchinson, J., Grubbs, N., Shepherd, M. N., & Mahaffey, J. W. (2007). The appendage role of insect disco genes and possible implications on the evolution of the maggot larval form. Developmental Biology, 309(1), 56–69. https://doi.org/10.1016/j.ydbio.2007.06.017

Fan, D. Z., Taniguchi, M., & Lindsey, J. (2007). Regioselective 15-bromination and functionalization of a stable synthetic bacteriochlorin. Journal of Organic Chemistry, 72(14), 5350–5357. https://doi.org/10.1021/jo070785s

Muthiah, C., Bhaumik, J., & Lindsey, J. (2007). Rational routes to formyl-substituted chlorins. Journal of Organic Chemistry, 72(15), 5839–5842. https://doi.org/10.1021/jo0707885

Thamyongkit, P., Muresan, A. Z., Diers, J. R., Holten, D., Bocian, D. F., & Lindsey, J. (2007). Meso-C-13-labeled porphyrins for studies of ground-state hole transfer in multiporphyrin arrays. Journal of Organic Chemistry, 72(14), 5207–5217. https://doi.org/10.1021/jo070593x

Liu, B., Gumpertz, M. L., Hu, S., & Ristaino, J. (2007). Long-term effects of organic and synthetic soil fertility amendments on soil microbial communities and the development of southern blight. Soil Biology and Biochemistry, 39(9), 2302–2316. https://doi.org/10.1016/j.soilbio.2007.04.001

Whitehurst, C. B., Soderblom, E. J., West, M. L., Hernandez, R., Goshe, M. B., & Brown, D. T. (2007). Location and role of free cysteinyl residues in the Sindbis virus E1 and E2 glycoproteins. Journal of Virology, 81(12), 6231–6240. https://doi.org/10.1128/JVI.02859-06

Baltunis, B. S., Huber, D. A., White, T. L., Goldfarb, B., & Stelzer, H. E. (2007). Genetic gain from selection for rooting ability and early growth in vegetatively propagated clones of loblolly pine. Tree Genetics & Genomes, 3(3), 227–238. https://doi.org/10.1007/s11295-006-0058-9

Baltunis, B. S., Huber, D. A., White, T. L., Goldfarb, B., & Stelzer, H. E. (2007). Genetic analysis of early field growth of loblolly pine clones and seedlings from the same full-sib families. Canadian Journal of Forest Research, 37(1), 195–205. https://doi.org/10.1139/X06-203

Korves, T. M., Schmid, K. J., Caicedo, A. L., Mays, C., Stinchcombe, J. R., Purugganan, M. D., & Schmitt, J. (2007). Fitness effects associated with the major flowering time gene FRIGIDA in Arabidopsis thaliana in the field. American Naturalist, 169(5), E141–157. https://doi.org/10.1086/513111

Schaff, J. E., Nielsen, D. M., Smith, C. P., Scholl, E. H., & Bird, D. M. K. (2007). Comprehensive transcriptome profiling in tomato reveals a role for glycosyltransferase in Mi-mediated nematode resistance. Plant Physiology, 144(2), 1079–1092. https://doi.org/10.1104/pp.106.090241

Wang, Z., Smith, C. E., & Atchley, W. R. (2007). Application of complex demodulation on bZIP and bHLH-PAS protein domains. Mathematical Biosciences, 207(2), 204–218. https://doi.org/10.1016/j.mbs.2007.01.004

OBrian, G. R., Georgianna, D. R., Wilkinson, J. R., Yu, J., Abbas, H. K., Bhatnagar, D., … Payne, G. A. (2007). The effect of elevated temperature on gene transcription and aflatoxin biosynthesis. Mycologia, 99(2), 232–239. https://doi.org/10.3852/mycologia.99.2.232

Holm, G. H., Zurney, J., Tumilasci, V., Leveille, S., Danthi, P., Hiscott, J., … Dermody, T. S. (2007). Retinoic acid-inducible gene-I and interferon-beta promoter stimulator-1 augment proapoptotic responses following mammalian reovirus infection via interferon regulatory factor-3. Journal of Biological Chemistry, 282(30), 21953–21961. https://doi.org/10.1074/jbc.M702112200

Milam, S. L., Nicely, N. I., Feeney, B., Mattos, C., & Clark, A. C. (2007). Rapid folding and unfolding of Apaf-1 CARD. Journal of Molecular Biology, 369(1), 290–304. https://doi.org/10.1016/j.jmb.2007.02.105

Kaltofen, E., & Yang, Z.-F. (2007). On exact and approximate interpolation of sparse rational functions. ISSAC 2007: International Symposium for Symbolic and Algebraic Computation: Proceedings. https://doi.org/10.1145/1277548.1277577

Im, Y. J., Perera, I. Y., Brglez, I., Davis, A. J., Stevenson-Paulik, J., Phillippy, B. Q., … Boss, W. F. (2007). Increasing plasma membrane phosphatidylinositol(4,5)bisphosphate biosynthesis increases phosphoinositide metabolism in Nicotiana tabacum. Plant Cell, 19(5), 1603–1616. https://doi.org/10.1105/tpc.107.051367

Shultz, R. W., Tatineni, V. M., Hanley-Bowdoin, L., & Thompson, W. F. (2007). [Review of Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice(1[W][OA])]. Plant Physiology, 144(4), 1697–1714.

Dogutan, D. K., Ptaszek, M., & Lindsey, J. (2007). Direct synthesis of magnesium porphine via 1-formyldipyrromethane. Journal of Organic Chemistry, 72(13), 5008–5011. https://doi.org/10.1021/jo070532z

Pfeiler, E. A., Azcarate-Peril, M. A., & Klaenhammer, T. R. (2007). Characterization of a novel bile-inducible operon encoding a two-component regulatory system in Lactobacillus acidophilus. Journal of Bacteriology, 189(13), 4624–4634. https://doi.org/10.1128/JB.00337-07

Lai, C. Q., Parnell, L. D., Lyman, R. F., Ordovas, J. A., & Mackay, T. F. C. (2007). Candidate genes affecting Drosophila life span identified by integrating microarray gene expression analysis and QTL mapping. Mechanisms of Ageing and Development, 128(3), 237–249. https://doi.org/10.1016/j.mad.2006.12.003

Davis, A. J., Im, Y. J., Dubin, J. S., Tomer, K. B., & Boss, W. F. (2007). Arabidopsis phosphatidylinositol phosphate kinase 1 binds F-actin and recruits phosphatidylinositol 4-kinase beta 1 to the actin cytoskeleton. Journal of Biological Chemistry, 282(19), 14121–14131. https://doi.org/10.1074/jbc.M611728200

Mackay, T. F. C., & Anholt, R. R. H. (2007). Ain't misbehavin? Genotype-environment interactions and the genetics of behavior. Trends in Genetics, 23(7), 311–314. https://doi.org/10.1016/j.tig.2007.03.013

jones, Valenzisi, A., Sontakke, S., Sprayberry, K. A., Maggi, R., Hegarty, B., & Breitschwerdt, E. (2007). Use of an insect cell culture growth medium to isolate bacteria from horses with effusive, fibrinous pericarditis: A preliminary study. Veterinary Microbiology, 121(1-2), 177–181. https://doi.org/10.1016/j.vetmic.2006.11.024

Ehrenreich, I. M., Stafford, P. A., & Purugganan, M. D. (2007). The genetic architecture of shoot branching in Arabidopsis thaliana: A comparative assessment of candidate gene associations vs. quantitative trait locus mapping. Genetics, 176(2), 1223–1236. https://doi.org/10.1534/genetics.107.071928

Rollmann, S. M., Yamamoto, R., Goossens, T., Zwarts, L., Callaerts-Vegh, Z., Callaerts, P., … Anholt, R. R. H. (2007). The early developmental gene Semaphorin 5c contributes to olfactory behavior in adult Drosophila. Genetics, 176(2), 947–956. https://doi.org/10.1534/genetics.106.069781

Jeong, J. S., Mitchell, T. K., & Dean, R. A. (2007). The Magnaporthe grisea snodprot1 homolog, MSPI, is required for virulence. FEMS Microbiology Letters, 273(2), 157–165. https://doi.org/10.1111/j.1574-6968.2007.00796.x

Taniguchi, M., Ptaszek, M., McDowell, B. E., Boyle, P. D., & Lindsey, J. (2007). Sparsely substituted chlorins as core constructs in chlorophyll analogue chemistry. Part 3: Spectral and structural properties. Tetrahedron, 63(18), 3850–3863. https://doi.org/10.1016/j.tet.2007.02.040

Taniguchi, M., Ptaszek, M., McDowell, B. E., & Lindsey, J. (2007). Sparsely substituted chlorins as core constructs in chlorophyll analogue chemistry. Part 2: Derivatization. Tetrahedron, 63(18), 3840–3849. https://doi.org/10.1016/j.tet.2007.02.076

Ptaszek, M., McDowell, B. E., Taniguchi, M., Kim, H. J., & Lindsey, J. (2007). Sparsely substituted chlorins as core constructs in chlorophyll analogue chemistry. Part 1: Synthesis. Tetrahedron, Vol. 63, pp. 3826–3839. https://doi.org/10.1016/j.tet.2007.02.038

Sederoff, R. R. (2007). Regulatory science in forest biotechnology. Tree Genetics & Genomes, 3(2), 71–74. https://doi.org/10.1007/s11295-006-0081-x

Chen, H. Q., Lee, M. H., Daub, M. E., & Chung, K. R. (2007). Molecular analysis of the cercosporin biosynthetic gene cluster in Cercospora nicotianae. Molecular Microbiology, 64(3), 755–770. https://doi.org/10.1111/j.1365-2958.2007.05689.x

Velez, H., Glassbrook, N. J., & Daub, M. E. (2007). Mannitol metabolism in the phytopathogenic fungus Alternaria alternata. Fungal Genetics and Biology, 44(4), 258–268. https://doi.org/10.1016/j.fgb.2006.09.008

Fosmire, S. P., Thomas, R., Jubala, C. M., Wojcieszyn, J. W., Valli, V. E. O., Getzy, D. M., … al, e. (2007). Inactivation of the p16 cyclin-dependent kinase inhibitor in high-grade canine non-Hodgkin's T-Cell lymphoma. Veterinary Pathology, 44(4), 467–478. https://doi.org/10.1354/vp.44-4-467

Ristaino, J., Johnson, A., Blanco-Meneses, M., & Liu, B. (2007). Identification of the tobacco blue mold pathogen, Peronospora tabacina, by polymerase chain reaction. Plant Disease, 91(6), 685–691. https://doi.org/10.1094/PDIS-91-6-0685

Loomis, K. D., Zhu, S., Yoon, K., Johnson, P. F., & Smart, R. (2007). Genetic ablation of CCAAT/Enhancer binding protein alpha in epidermis reveals its role in suppression of epithelial tumorigenesis. Cancer Research, 67(14), 6768–6776. https://doi.org/10.1158/0008-5472.CAN-07-0139

Jordan, C. V., Shen, W., Hanley-Bowdoin, L., & Robertson, D. (2007). Geminivirus-induced gene silencing of the tobacco retinoblastoma-related gene results in cell death and altered development. Plant Molecular Biology, 65(1-2), 163–175. https://doi.org/10.1007/s11103-007-9206-3

Breitschwerdt, E. B., Maggi, R. G., Duncan, A. W., Nicholson, W. L., Hegarty, B. C., & Woods, C. W. (2007). BartonellaSpecies in Blood of Immunocompetent Persons with Animal and Arthropod Contact. Emerging Infectious Diseases, 13(6), 938–941. https://doi.org/10.3201/eid1306.061337

Cockwill, K. R., Taylor, S. M., Phillbert, H. M., Breitschwerdt, E. B., & Maggi, R. G. (2007). Bartonella vinsonii subsp berkhoffii endocarditis in a dog from Saskatchewan. Canadian Veterinary Journal, 48(8), 839–844.

Valentine, K. H., Harms, C. A., Cadenas, M. B., Birkenheuer, A. J., Marr, H. S., Braun-McNeill, J., … Breitschwerdt, E. B. (2007). Bartonella DNA in Loggerhead Sea Turtles. Emerging Infectious Diseases, 13(6), 949–950. https://doi.org/10.3201/eid1306.061551

Zhang, D. W., Lin, X. H., & Sowers, M. (2007). Two-stage functional mixed models for evaluating the effect of longitudinal covariate profiles on a scalar outcome. Biometrics, 63(2), 351–362. https://doi.org/10.1111/j.1541-0420.2006.00713.x

Toll, J., & Breitschwerdt, E. (2007). Science, medicine, academia, and the future of the ACVIM. Journal of Veterinary Internal Medicine, 21(3), 364–366. https://doi.org/10.1111/j.1939-1676.2007.tb02977.x

Hall, M. C., Dworkin, I., Ungerer, M. C., & Purugganan, M. (2007). Genetics of microenvironmental canalization in Arabidopsis thaliana. Proceedings of the National Academy of Sciences of the United States of America, 104(34), 13717–13722.

Fan, C. Z., Xiang, Q. Y., Remington, D. L., Purugganan, M. D., & Wiegmann, B. M. (2007). Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae). Genetica, 130(1), 19–34. https://doi.org/10.1007/s10709-006-0016-3

Miranda, L. M., Murphy, J. P., Marshall, D., Cowger, C., & Leath, S. (2007). Chromosomal location of Pm35, a novel Aegilops tauschii derived powdery mildew resistance gene introgressed into common wheat (Triticum aestivum L.). Theoretical and Applied Genetics, 114(8), 1451–1456. https://doi.org/10.1007/s00122-007-0530-4

Jiao, J. Y., Thamyongkit, P., Schmidt, I., Lindsey, J., & Bocian, D. F. (2007). Characterization of porphyrin surface orientation in monolayers on au(111) and si(100) using spectroscopically labeled molecules. Journal of Physical Chemistry. C, 111(34), 12693–12704. https://doi.org/10.1021/jp073824c

Gupta, S., Leutenegger, C. M., Dean, G. A., Steckbeck, J. D., Cole, K. S., & Sparger, E. E. (2007). Vaccination of cats with attenuated feline immunodeficiency virus proviral DNA vaccine expressing gamma interferon. Journal of Virology, 81(2), 465–473. https://doi.org/10.1128/JVI.00815-06

Mazur, M., Hope-Ross, K., Kadla, J. F., Sederoff, R., & Chang, H. M. (2007). Synthesis of hydroxyphenylpropanoid beta-D-glucosides. Journal of Wood Chemistry and Technology, 27(1), 1–8. https://doi.org/10.1080/02773810701282264

Lu, S. F., Sun, Y. H., Amerson, H., & Chiang, V. L. (2007). [Review of MicroRNAs in loblolly pine (Pinus taeda L.) and their association with fusiform rust gall development]. Plant Journal, 51(6), 1077–1098. https://doi.org/10.1111/j.1365-313x.2007.03208.x

Mitra, S. K., Gantt, J. A., Ruby, J. F., Clouse, S. D., & Goshe, M. B. (2007). Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. Journal of Proteome Research, 6(5), 1933–1950. https://doi.org/10.1021/pr060525b

Breitschwerdt, E., Magi, R. G., Sigmon, B., & Nicholson, W. L. (2007). Isolation of Bartonella quintana from a woman and a cat following putative bite transmission. Journal of Clinical Microbiology, 45(1), 270–272. https://doi.org/10.1128/JCM.01451-06

Duke, S. E., Samollow, P. B., Mauceli, E., Lindblad-Toh, K., & Breen, M. (2007). Integrated cytogenetic BAC map of the genome of the gray, short-tailed opossum, Monodelphis domestica. Chromosome Research, 15(3), 361–370. https://doi.org/10.1007/s10577-007-1131-4

Yoon, K., Zhu, S., Ewing, S. J., & Smart, R. (2007). Decreased survival of C/EBP beta-deficient keratinocytes is due to aberrant regulation of p53 levels and function. Oncogene, 26(3), 360–367. https://doi.org/10.1038/sj.onc.1209797

Duncan, A. W., Maggi, R., & Breitschwerdt, E. (2007). A combined approach for the enhanced detection and isolation of Bartonella species in dog blood samples: Pre-enrichment liquid culture followed by PCR and subculture onto agar plates. Journal of Microbiological Methods, 69(2), 273–281. https://doi.org/10.1016/j.mimet.2007.01.010

Kim, H. J., Dogutan, D. K., Ptaszek, M., & Lindsey, J. (2007). Synthesis of hydrodipyrrins tailored for reactivity at the 1-and 9-positions. Tetrahedron, 63(1), 37–55. https://doi.org/10.1016/j.tet.2006.10.027

Morales, S. C., Breitschwerdt, E. B., Washabau, R. J., Matise, I., Maggi, R. G., & Duncan, A. W. (2007). Detection ofBartonella henselaeDNA in two dogs with pyogranulomatous lymphadenitis. Journal of the American Veterinary Medical Association, 230(5), 681–685. https://doi.org/10.2460/javma.230.5.681

Chung, R. H., Morris, R. W., Zhang, L., Li, Y. J., & Martin, E. R. (2007). X-APL: An improved family-based test of association in the presence of linkage for the X chromosome. American Journal of Human Genetics, 80(1), 59–68. https://doi.org/10.1086/510630

Im, Y. J., Davis, A. J., Perera, I. Y., Johannes, E., Allen, N. S., & Boss, W. F. (2007). The N-terminal membrane occupation and recognition nexus domain of Arabidopsis phosphatidylinositol phosphate kinase 1 regulates enzyme activity. Journal of Biological Chemistry, 282(8), 5443–5452. https://doi.org/10.1074/jbc.M611342200

Cardinal, A. J., Burton, J. W., Camacho-Roger, A. M., Yang, J. H., Wilson, R. F., & Dewey, R. E. (2007). Molecular analysis of soybean lines with low palmitic acid content in the seed oil. Crop Science, 47(1), 304–310. https://doi.org/10.2135/cropsci2006.04.0272

Gómez-Alpizar, L., Carbone, I., & Ristaino, J. (2007). An Andean origin of Phytophthora infestans inferred from mitochondrial and nuclear gene genealogies. Proceedings of the National Academy of Sciences of the United States of America, 104(9), 3306–3311. https://doi.org/10.1073/pnas.0611479104

Atchley, W. R., & Zhao, J. P. (2007). Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins. Molecular Biology and Evolution, 24(1), 192–202. https://doi.org/10.1093/molbev/msl143

Abad, J. A., Parks, E. J., New, S. L., Fuentes, S., Jester, W., & Moyer, J. W. (2007). First report of Sweet potato chlorotic stunt virus, a component of sweetpotato virus disease, in North Carolina. Plant Disease, 91(3), 327. https://doi.org/10.1094/PDIS-91-3-0327B

Pond, S. L. K., Mannino, F. V., Gravenor, M. B., Muse, S. V., & Frost, S. D. W. (2007). Evolutionary model selection with a genetic algorithm: A case study using stem RNA. Molecular Biology and Evolution, 24(1), 159–170. https://doi.org/10.1093/molbev/msl144

Zou, W., Aylor, D. L., & Zeng, Z. B. (2007). eQTL Viewer: visualizing how sequence variation affects genome-wide transcription. BMC Bioinformatics, 8(7).

Chung, R. H., Hauser, E. R., & Martin, E. R. (2007). Interpretation of simultaneous linkage and family-based association tests in genome screens. Genetic Epidemiology, 31(2), 134–142. https://doi.org/10.1002/gepi.20196

Herrero, S., & Daub, M. E. (2007). Genetic manipulation of Vitamin B-6 biosynthesis in tobacco and fungi uncovers limitations to up-regulation of the pathway. Plant Science, 172(3), 609–620. https://doi.org/10.1016/j.plantsci.2006.11.011