Genomic Sciences - 2018

Molecular and Biochemical Toxicology (5th ed.). (2018). (ed.). J. Wiley and Sons.

Smart, R. C., & Hodgson, E. (Eds.). (2018). Molecular and Biochemical Toxicology (5th ed.). Hoboken, NJ: J. Wiley and Sons.

Smart, R. C., & Hall, J. R. (2018). Carcinogenesis. In R. C. Smart & E. Hodgson (Eds.), Molecular and Biochemical Toxicology (5th ed.). Hoboken, NJ: J Wiley and Sons.

Tsuji, Y., & Smart, R. C. (2018). Molecular Techniques in the Study of Gene Function. In R. C. Smart & E. Hodgson (Eds.), Molecular and Biochemical Toxicology (5th ed.). Hoboken, NJ: J Wiley and Sons.

Smart, R. C., & Hodgson, E. (2018). Molecular and Biochemical Toxicology: Definition and Scope. In R. C. Smart & E. Hodgson (Eds.), Molecular and Biochemical Toxicology (5th ed.). Hoboken, NJ: J Wiley and Sons.

Anholt, R. R. H., & Mackay, T. F. C. (2018). The road less traveled: from genotype to phenotype in flies and humans. Mammalian Genome, 29(1-2), 5–23. https://doi.org/10.1007/S00335-017-9722-7

Mbewe, W., Hanley-Bowdoin, L., Ndunguru, J., & Duffy, S. (2018). Cassava viruses – host jumps, virus recombination, spread in plant material. In A. Records & J. Ristaino (Eds.), Emerging Plant Diseases and Global Food Security. St. Paul, MN: APS Press.

Schuchman, R. M., Vancini, R., Piper, A., Breuer, D., Ribeiro, M., Ferreira, D., … Brown, D. T. (2018). Role of the vacuolar ATPase in the Alphavirus replication cycle. Heliyon, 4(7), e00701. https://doi.org/10.1016/J.HELIYON.2018.E00701

Palkopoulou, E., Lipson, M., Mallick, S., Nielsen, S., Rohland, N., Baleka, S., … Reich, D. (2018). A comprehensive genomic history of extinct and living elephants. Proceedings of the National Academy of Sciences, 115(11), E2566–E2574. https://doi.org/10.1073/PNAS.1720554115

Fisher, M. L., Watson, D. W., Osborne, J. A., Mochizuki, H., Breen, M., & Schal, C. (2018). Growth kinetics of endosymbiont Wolbachia in the common bed bug, Cimex lectularius. Scientific Reports, 8(1). https://doi.org/10.1038/S41598-018-29682-2

Messenger, Z. J., Hall, J. R., Jima, D. D., House, J. S., Tam, H. W., Tokarz, D. A., & Smart, R. C. (2018). C/EBPβ deletion in oncogenic Ras skin tumors is a synthetic lethal event. Cell Death & Disease, 9(11). https://doi.org/10.1038/S41419-018-1103-Y

Schumann, G. L., & D'Arcy, C. J. (2018). Late blight of potato and tomato. The Plant Health Instructor. https://doi.org/10.1094/PHI-I-2000-0724-01

Ismayil, A., Haxim, Y., Wang, Y., Li, H., Qian, L., Han, T., … Liu, Y. (2018). Cotton Leaf Curl Multan virus C4 protein suppresses both transcriptional and post-transcriptional gene silencing by interacting with SAM synthetase. PLOS Pathogens, 14(8), e1007282. https://doi.org/10.1371/journal.ppat.1007282

Ristaino, J. B., & Restrepo, S. (2018). Track emerging late blight in the US and South America using a disease alert and surveillance systems and population genomics. PHYTOPATHOLOGY, 108(10).

Ristaino, J., Yang, Y. P., Saville, A. C., Guenter, R., & Tateosian, L. (2018). Archival Data and Text Analytics to Track 19th Century Late Blight. PHYTOPATHOLOGY, 108(10).

Kovačević Filipović, M. M., Beletić, A. D., Ilić Božović, A. V., Milanović, Z., Tyrrell, P., Buch, J., … Chandrashekar, R. (2018). Molecular and Serological Prevalence of Anaplasma phagocytophilum, A. platys, Ehrlichia canis, E. chaffeenses, E. ewingii, Borrelia burgdorferi, Babesia canis, B. gibsoni and B. vogeli among Clinically Healthy Outdoor Dogs in Serbia. Veterinary Parasitology: Regional Studies and Reports, 14, 117–122. https://doi.org/10.1016/j.vprsr.2018.10.001

Donovan, T. A., Balakrishnan, N., Carvalho Barbosa, I., McCoy, T., Breitschwerdt, E. B., & Fox, P. R. (2018). Bartonella spp. as a Possible Cause or Cofactor of Feline Endomyocarditis–Left Ventricular Endocardial Fibrosis Complex. Journal of Comparative Pathology, 162, 29–42. https://doi.org/10.1016/j.jcpa.2018.05.002

Breitschwerdt, E., Jandt, U., & Bruelheide, H. (2018). Using co-occurrence information and trait composition to understand individual plant performance in grassland communities. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-27017-9

Breitschwerdt, E. B., & Maggi, R. G. (2018). Bartonella quintana and Bartonella vinsonii subsp. vinsonii bloodstream co-infection in a girl from North Carolina, USA. Medical Microbiology and Immunology, 208(1), 101–107. https://doi.org/10.1007/s00430-018-0563-0

Kim, J. H., Megquier, K., Sarver, A. L., Thomas, R., Wang, C., Elvers, I., … Modiano, J. F. (2018, July). Mutational and transcriptomic profiling identify distinct angiogenic and inflammatory subtypes of angiosarcoma. CANCER RESEARCH, Vol. 78. https://doi.org/10.1158/1538-7445.AM2018-5357

Sarver, A. L., Mills, L., Temiz, N., Scott, M. I., Sarver, A., Spector, L., … Largaespada, D. (2018, July). Comparative genomic analyses of osteosarcoma etiology reveal a chromosomal structural rationale for the increased incidence of osteosarcoma in dogs. CANCER RESEARCH, Vol. 78. https://doi.org/10.1158/1538-7445.AM2018-3399

Imamoglu, E., Kaltofen, E. L., & Yang, Z. (2018). Sparse Polynomial Interpolation With Arbitrary Orthogonal Polynomial Bases. ISSAC'18: PROCEEDINGS OF THE 2018 ACM INTERNATIONAL SYMPOSIUM ON SYMBOLIC AND ALGEBRAIC COMPUTATION, pp. 223–230. https://doi.org/10.1145/3208976.3208999

Liu, J., Drexel, J., Andrews, B., Eberts, M., Breitschwerdt, E., & Chandrashekar, R. (2018). Comparative Evaluation of 2 In-Clinic Assays for Vector-Borne Disease Testing in Dogs. TOPICS IN COMPANION ANIMAL MEDICINE, 33(4), 114–118. https://doi.org/10.1053/j.tcam.2018.09.003

Schreeg, M. E., Marr, H. S., Tarigo, J. L., Sherrill, M. K., Outi, H. K., Scholl, E. H., … Birkenheuer, A. J. (2018). Identification of Cytauxzoon felis antigens via protein microarray and assessment of expression library immunization against cytauxzoonosis. CLINICAL PROTEOMICS, 15(1). https://doi.org/10.1186/s12014-018-9218-9

Guenther, R. H., Lommel, S. A., Opperman, C. H., & Sit, T. L. (2018). Plant Virus-Based Nanoparticles for the Delivery of Agronomic Compounds as a Suspension Concentrate. VIRUS-DERIVED NANOPARTICLES FOR ADVANCED TECHNOLOGIES: METHODS AND PROTOCOLS, Vol. 1776, pp. 203–214. https://doi.org/10.1007/978-1-4939-7808-3_13

Taniguchi, M., Hu, G., Liu, R., Du, H., & Lindsey, J. S. (2018). Red and near-infrared fluorophores inspired by chlorophylls. Consideration of practical brightness in multicolor flow cytometry and biomedical sciences. REPORTERS, MARKERS, DYES, NANOPARTICLES, AND MOLECULAR PROBES FOR BIOMEDICAL APPLICATIONS X, Vol. 10508. https://doi.org/10.1117/12.2302709

Hughes, R.-A., Jin, X., Zhang, Y., Zhang, R., Tran, S., Williams, P. G., … Miller, E. S. (2018). Genome sequence, metabolic properties and cyanobacterial attachment of Porphyrobacter sp. HT-58-2 isolated from a filamentous cyanobacterium–microbial consortium. Microbiology, 164(10), 1229–1239. https://doi.org/10.1099/mic.0.000706

Neupane, P., Hegarty, B. C., Marr, H. S., Maggi, R. G., Birkenheuer, A. J., & Breitschwerdt, E. B. (2018). Evaluation of cell culture-grown Bartonella
 antigens in immunofluorescent antibody assays for the serological diagnosis of bartonellosis in dogs. Journal of Veterinary Internal Medicine, 32(6), 1958–1964. https://doi.org/10.1111/jvim.15301

Birkenheuer, A. J., Marr, H. S., Wilson, J. M., Breitschwerdt, E. B., & Qurollo, B. A. (2018). Babesia gibsoni
 cytochrome b mutations in canine blood samples submitted to a US veterinary diagnostic laboratory. Journal of Veterinary Internal Medicine, 32(6), 1965–1969. https://doi.org/10.1111/jvim.15300

Castillo, A. C., Goldfarb, B., Johnsen, K. H., Roberds, J. H., & Nelson, C. D. (2018). Genetic Variation in Water-Use Efficiency (WUE) and Growth in Mature Longleaf Pine. FORESTS, 9(11). https://doi.org/10.3390/f9110727

Álvarez-Fernández, A., Breitschwerdt, E. B., & Solano-Gallego, L. (2018). Bartonella infections in cats and dogs including zoonotic aspects. Parasites & Vectors, 11(1). https://doi.org/10.1186/s13071-018-3152-6

Turpin, Z. M., Vera, D. L., Savadel, S. D., Lung, P.-Y., Wear, E. E., Mickelson-Young, L., … Bass, H. W. (2018, October). Chromatin structure profile data from DNS-seq: Differential nuclease sensitivity mapping of four reference tissues of B73 maize (Zea mays L). DATA IN BRIEF, Vol. 20, pp. 358–363. https://doi.org/10.1016/j.dib.2018.08.015

Jiang, J., Matula, A. J., Swierk, J. R., Romano, N., Wu, Y., Batista, V. S., … Brudvig, G. W. (2018). Unusual Stability of a Bacteriochlorin Electrocatalyst under Reductive Conditions. A Case Study on CO2 Conversion to CO. ACS CATALYSIS, 8(11), 10131–10136. https://doi.org/10.1021/acscatal.8b02991

Southern, B. L., Neupane, P., Ericson, M. E., Dencklau, J. C., Linder, K. E., Bradley, J. M., … Breitschwerdt, E. B. (2018). Bartonella henselae
 in a dog with ear tip vasculitis. Veterinary Dermatology, 29(6), 537–e180. https://doi.org/10.1111/vde.12695

Liu, Y., Langemeier, M. R., Small, I. M., Joseph, L., Fry, W. E., Ristaino, J. B., … Preckel, P. V. (2018). A Risk Analysis of Precision Agriculture Technology to Manage Tomato Late Blight. SUSTAINABILITY, 10(9). https://doi.org/10.3390/su10093108

Caldo, K. M. P., Shen, W., Xu, Y., Hanley-Bowdoin, L., Chen, G., Weselake, R. J., & Lemieux, M. J. (2018). Diacylglycerol acyltransferase 1 is activated by phosphatidate and inhibited by SnRK1-catalyzed phosphorylation. PLANT JOURNAL, 96(2), 287–299. https://doi.org/10.1111/tpj.14029

Dumont, B. L., Williams, C. L., Ng, B. L., Horncastle, V., Chambers, C. L., McGraw, L. A., … Breen, M. (2018). Relationship Between Sequence Homology, Genome Architecture, and Meiotic Behavior of the Sex Chromosomes in North American Voles. GENETICS, 210(1), 83–97. https://doi.org/10.1534/genetics.118.301182

Hendricks, W. P. D., Zismann, V., Sivaprakasam, K., Legendre, C., Poorman, K., Tembe, W., … Trent, J. M. (2018). Somatic inactivating PTPRJ mutations and dysregulated pathways identified in canine malignant melanoma by integrated comparative genomic analysis. PLOS GENETICS, 14(9). https://doi.org/10.1371/journal.pgen.1007589

Shen, W., Bobay, B. G., Greeley, L. A., Reyes, M. I., Rajabu, C. A., Blackburn, R. K., … Hanley-Bowdoin, L. (2018). Sucrose Nonfermenting 1-Related Protein Kinase 1 Phosphorylates a Geminivirus Rep Protein to Impair Viral Replication and Infection. PLANT PHYSIOLOGY, 178(1), 372–389. https://doi.org/10.1104/pp.18.00268

Veneziano, V., Piantedosi, D., Ferrari, N., Neola, B., Santoro, M., Pacifico, L., … Chandrashekar, R. (2018). Distribution and risk factors associated with Babesia spp. infection in hunting dogs from Southern Italy. TICKS AND TICK-BORNE DISEASES, 9(6), 1459–1463. https://doi.org/10.1016/j.ttbdis.2018.07.005

Yuen, J. M., Diers, J. R., Alexy, E. J., Roy, A., Mandal, A. K., Kang, H. S., … Holten, D. (2018). Origin of Panchromaticity in Multichromophore-Tetrapyrrole Arrays. JOURNAL OF PHYSICAL CHEMISTRY A, 122(36), 7181–7201. https://doi.org/10.1021/acs.jpca.8b06815

Liu, Y., Zhang, S., & Lindsey, J. S. (2018). [Review of Total synthesis campaigns toward chlorophylls and related natural hydroporphyrins - diverse macrocycles, unrealized opportunities]. NATURAL PRODUCT REPORTS, 35(9), 879–901. https://doi.org/10.1039/c8np00020d

Morgante, F., Huang, W., Maltecca, C., & Mackay, T. F. C. (2018). Effect of genetic architecture on the prediction accuracy of quantitative traits in samples of unrelated individuals. HEREDITY, 120(6), 500–514. https://doi.org/10.1038/s41437-017-0043-0

Dluge, K. L., Song, Z., Wang, B., Steede, W. T., Xiao, B., Liu, Y., & Dewey, R. E. (2018). Characterization of Nicotiana tabacum genotypes possessing deletion mutations that affect potyvirus resistance and the production of trichome exudates. BMC GENOMICS, 19. https://doi.org/10.1186/s12864-018-4839-y

Pettersson, M., Talgo, V., Frampton, J., Karlsson, B., & Ronnberg, J. (2018). Pathogenicity of Neonectria fuckeliana on Norway Spruce Clones in Sweden and Potential Management Strategies. FORESTS, 9(3). https://doi.org/10.3390/f9030105

Hinesley, E., Frampton, J., Deal, B., & Deal, E. (2018). Ortet Age and Clonal Effects on Growth and Market Value of Fraser Fir (Abies fraseri) Grafts as Christmas Trees. FORESTS, 9(4). https://doi.org/10.3390/f9040182

Qurollo, B. A., Larsen, P. A., Rakotondrainibe, H. H., Mahefarisoa, K., Rajaonarivelo, T., Razafindramanana, J., … Williams, C. V. (2018). Molecular surveillance of novel tick-borne organisms in Madagascar's lemurs. TICKS AND TICK-BORNE DISEASES, 9(3), 672–677. https://doi.org/10.1016/j.ttbdis.2018.02.012

Rajabu, C. A., Kennedy, G. G., Ndunguru, J., Ateka, E. M., Tairo, F., Hanley-Bowdoin, L., & Ascencio-Ibanez, J. T. (2018). Lanai: A small, fast growing tomato variety is an excellent model system for studying geminiviruses. JOURNAL OF VIROLOGICAL METHODS, 256, 89–99. https://doi.org/10.1016/j.jviromet.2018.03.002

Kuenemann, M. A., Spears, P. A., Orndorff, P. E., & Fourches, D. (2018). In silico predicted glucose-1-phosphate Uridylyltransferase (GalU) inhibitors block a key pathway required for Listeria virulence. Molecular Informatics, 37(6-7).

Wang, J. P., Matthews, M. L., Williams, C. M., Shi, R., Yang, C., Tunlaya-Anukit, S., … Chiang, V. L. (2018). Improving wood properties for wood utilization through multi-omics integration in lignin biosynthesis. NATURE COMMUNICATIONS, 9. https://doi.org/10.1038/s41467-018-03863-z

Drummond, M. R., Lania, B. G., Diniz, P. P. V. de P., Gilioli, R., Demolin, D. M. R., Scorpio, D. G., … Velho, P. E. N. F. (2018). Improvement of
                    Bartonella henselae
                    DNA Detection in Cat Blood Samples by Combining Molecular and Culture Methods. Journal of Clinical Microbiology, 56(5). https://doi.org/10.1128/jcm.01732-17

Frampton, J., Pettersson, M., & Braham, A. M. (2018). Genetic Variation for Resistance to Phytophthora Root Rot in Eastern White Pine Seedlings. FORESTS, 9(4). https://doi.org/10.3390/f9040161

Hu, G., Kang, H. S., Mandal, A. K., Roy, A., Kirmaier, C., Bocian, D. F., … Lindsey, J. S. (2018). Synthesis of arrays containing porphyrin, chlorin, and perylene-imide constituents for panchromatic light-harvesting and charge separation. RSC ADVANCES, 8(42), 23854–23874. https://doi.org/10.1039/c8ra04052d

Mozayeni, B. R., Maggi, R. G., Bradley, J. M., & Breitschwerdt, E. B. (2018). Rheumatological presentation of Bartonella koehlerae and Bartonella henselae bacteremias. Medicine, 97(17), e0465. https://doi.org/10.1097/md.0000000000010465

Walker, T. D., & McKeand, S. E. (2018). Fusiform Rust Hazard Mapping for Loblolly Pine in the Southeastern United States Using Progeny Test Data. JOURNAL OF FORESTRY, 116(2), 117–122. https://doi.org/10.5849/jof-2017-070

Yancey, C. B., Diniz, P. P. V. P., Breitschwerdt, E. B., Hegarty, B. C., Wiesen, C., & Qurollo, B. A. (2018). Doxycycline treatment efficacy in dogs with naturally occurring Anaplasma phagocytophilum infection. JOURNAL OF SMALL ANIMAL PRACTICE, 59(5), 286–293. https://doi.org/10.1111/jsap.12799

Taniguchi, M., Du, H., & Lindsey, J. S. (2018). PhotochemCAD 3: Diverse Modules for Photophysical Calculations with Multiple Spectral Databases. PHOTOCHEMISTRY AND PHOTOBIOLOGY, 94(2), 277–289. https://doi.org/10.1111/php.12862

Jarred, J., Lewbart, G. A., Stover, K., Thomas, B., Maggi, R., & Breitschwerdt, E. B. (2018). Identification of Hemotropic Mycoplasmas in an Eastern Box Turtle (Terrapene carolina carolina) and a Yellow-bellied Slider (Trachemys scripta scripta) from North Carolina, USA. Journal of Wildlife Diseases, 54(2), 371–374. https://doi.org/10.7589/2017-07-153

Concia, L., Brooks, A. M., Wheeler, E., Zynda, G. J., Wear, E. E., LeBlanc, C., … Hanley-Bowdoin, L. (2018). Genome-Wide Analysis of the Arabidopsis Replication Timing Program. PLANT PHYSIOLOGY, 176(3), 2166–2185. https://doi.org/10.1104/pp.17.01537

Taniguchi, M., & Lindsey, J. S. (2018). Database of Absorption and Fluorescence Spectra of > 300 Common Compounds for use in PhotochemCAD. PHOTOCHEMISTRY AND PHOTOBIOLOGY, 94(2), 290–327. https://doi.org/10.1111/php.12860

Vieira, T. S. W. J., Qurollo, B. A., Mongruel, A. C. B., Baggio, R. A., Vidotto, O., Breitschwerdt, E. B., & Vieira, R. F. C. (2018, May). Potentially Same Novel Ehrlichia Species in Horses in Nicaragua and Brazil. https://doi.org/10.3201/eid2405.172076

Blanco-Meneses, M., Carbone, I., & Ristaino, J. B. (2018). Population structure and migration of the Tobacco Blue Mold Pathogen,Peronospora tabacina,into North America and Europe. Molecular Ecology, 27(3), 737–751. https://doi.org/10.1111/mec.14453

Meurs, K. M., Friedenberg, S. G., Williams, B., Keene, B. W., Atkins, C. E., Adin, D., … Mackay, T. (2018). Evaluation of genes associated with human myxomatous mitral valve disease in dogs with familial myxomatous mitral valve degeneration. VETERINARY JOURNAL, 232, 16–19. https://doi.org/10.1016/j.tvjl.2017.12.002

Jaffe, D. A., Chomel, B. B., Kasten, R. W., Breitschwerdt, E. B., Maggi, R. G., McLeish, A., & Zieger, U. (2018). Bartonella henselae in small Indian mongooses (Herpestes auropunctatus) from Grenada, West Indies. VETERINARY MICROBIOLOGY, 216, 119–122. https://doi.org/10.1016/j.vetmic.2018.02.009

Randell, M. G., Balakrishnan, N., Gunn-Christie, R., Mackin, A., & Breitschwerdt, E. B. (2018). Bartonella henselae
 infection in a dog with recalcitrant ineffective erythropoiesis. Veterinary Clinical Pathology, 47(1), 45–50. https://doi.org/10.1111/vcp.12575

Dey, T., Saville, A., Myers, K., Tewari, S., Cooke, D. E. L., Tripathy, S., … Guha Roy, S. (2018). Large sub-clonal variation in Phytophthora infestans from recent severe late blight epidemics in India. Scientific Reports, 8(1). https://doi.org/10.1038/s41598-018-22192-1

Hood, D., Sahin, T., Parkes-Loach, P. S., Jiao, J., Harris, M. A., Dilbeck, P., … Holten, D. (2018). Expanding Covalent Attachment Sites of Nonnative Chromophores to Encompass the C-Terminal Hydrophilic Domain in Biohybrid Light-Harvesting Architectures. CHEMPHOTOCHEM, 2(3), 300–313. https://doi.org/10.1002/cptc.201700182

Liu, R., Liu, M. R., Hood, D., Chen, C. Y., MacNevin, C. J., Holten, D., & Lindsey, J. S. (2018). Chlorophyll-inspired red-region fluorophores: Building block synthesis and studies in aqueous media. Molecules, 23(1).

Naik, P., Wang, J. P., Sederoff, R., Chiang, V., Williams, C., & Ducoste, J. J. (2018). Assessing the impact of the 4CL enzyme complex on the robustness of monolignol biosynthesis using metabolic pathway analysis. PLOS ONE, 13(3). https://doi.org/10.1371/journal.pone.0193896

Liu, J., Eberts, M., Bewsey, H., Thomas P. O'Connor, Chandrashekar, R., & Breitschwerdt, E. B. (2018). Sensitivity and specificity levels of two rapid assays for antibodies to Anaplasma spp. in dogs. JOURNAL OF VETERINARY DIAGNOSTIC INVESTIGATION, 30(2), 290–293. https://doi.org/10.1177/1040638717745932

Zhang, Y., Zhang, R., Hughes, R.-A., Dai, J., Gurr, J. R., Williams, P. G., … Lindsey, J. S. (2018). Quantitation of Tolyporphins, Diverse Tetrapyrrole Secondary Metabolites with Chlorophyll-Like Absorption, from a Filamentous Cyanobacterium-Microbial Community. PHYTOCHEMICAL ANALYSIS, 29(2), 205–216. https://doi.org/10.1002/pca.2735

Weaver, S., Shank, S. D., Spielman, S. J., Li, M., Muse, S. V., & Pond, S. L. K. (2018). Datamonkey 2.0: A Modern Web Application for Characterizing Selective and Other Evolutionary Processes. MOLECULAR BIOLOGY AND EVOLUTION, 35(3), 773–777. https://doi.org/10.1093/molbev/msx335

Lashnits, E., Correa, M., Hegarty, B. C., Birkenheuer, A., & Breitschwerdt, E. B. (2018). Bartonella Seroepidemiology in Dogs from North America, 2008-2014. JOURNAL OF VETERINARY INTERNAL MEDICINE, 32(1), 222–231. https://doi.org/10.1111/jvim.14890

Lstiburek, M., Bittner, V., Hodge, G. R., Picek, J., & Mackay, T. F. C. (2018). Estimating Realized Heritability in Panmictic Populations. GENETICS, 208(1), 89–95. https://doi.org/10.1534/genetics.117.300508