Genomic Sciences - 2019

Mathew, R., & Opperman, C. H. (2019). The genome of the migratory nematode, Radopholus similis, reveals signatures of close association to the sedentary cyst nematodes. PLOS ONE, 14(10). https://doi.org/10.1371/journal.pone.0224391

Megquier, K., Turner-Maier, J., Swofford, R., Kim, J.-H., Sarver, A. L., Wang, C., … Lindblad-Toh, K. (2019). Comparative Genomics Reveals Shared Mutational Landscape in Canine Hemangiosarcoma and Human Angiosarcoma. MOLECULAR CANCER RESEARCH, 17(12), 2410–2421. https://doi.org/10.1158/1541-7786.MCR-19-0221

Gabrawy, M. M., Campbell, S., Carbone, M. A., Morozova, T. V., Arya, G. H., Turlapati, L. B., … Abadir, P. M. (2019). Lisinopril Preserves Physical Resilience and Extends Life Span in a Genotype-Specific Manner in Drosophila melanogaster. JOURNALS OF GERONTOLOGY SERIES A-BIOLOGICAL SCIENCES AND MEDICAL SCIENCES, 74(12), 1844–1852. https://doi.org/10.1093/gerona/glz152

Dumas, J.-G., Kaltofen, E., Lucas, D., & Pernet, C. (2019). Elimination-based certificates for triangular equivalence and rank profiles. JOURNAL OF SYMBOLIC COMPUTATION, Vol. 98, pp. 246–269. https://doi.org/10.1016/j.jsc.2019.07.013

Simoes, R. D., LaVoy, A., & Dean, G. A. (2019). Effects of Regulatory T Cell Depletion on NK Cell Responses against Listeria monocytogenes in Feline Immunodeficiency Virus Infected Cats. VIRUSES-BASEL, 11(11). https://doi.org/10.3390/v11110984

Ballatore, M. B., Milanesio, M. E., Fujita, H., Lindsey, J., & Durantini, E. N. (2019). Bacteriochlorin-bis(spermine) conjugate affords an effective photodynamic action to eradicate microorganisms. JOURNAL OF BIOPHOTONICS. https://doi.org/10.1002/jbio.201960061

Saville, A. C., & Ristaino, J. (2019). Spread of the famine lineage of Phytophthora infestans into the African and Asian continents. Plant Health 2019.

Li, Z., Paul, R., Tis, T. B., Saville, A., Hansel, J., Ristaino, J., & Wei, Q. (2019). Noninvasive diagnosis of tomato late blight via smartphone fingerprinting of leaf volatiles. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 257.

Li, Z., Paul, R., Tis, T. B., Saville, A. C., Hansel, J. C., Yu, T., … Wei, Q. (2019). Non-invasive plant disease diagnostics enabled by smartphone-based fingerprinting of leaf volatiles. Nature Plants, 5(8), 856–866.

Alves, T. C. A., Tessmann, D. J., Ivors, K. L., Ristaino, J. B., & Santos, Á. F. (2019). Phytophthora acaciae sp. nov., a new species causing gummosis of black wattle in Brazil. Mycologia, 1–11.

Nowicki, M., Hadziabdic, D., Boggess, S. L., Runge, F., Thines, M., Ristaino, J., … Trigiano, R. N. (2019). Genomic microsatellites evidence species diversity and origin of Peronospora tabacina, an important pathogen of tobacco. Plant Health 2019.

Hansel, J., & Ristaino, J. (2019). Evaluation of a strain of Bacillus subtilis for management of Phytophthora blight of bell pepper. Plant Health 2019.

Ristaino, J. B., Saville, A., Paul, R., Cooper, D., & Wei, Q. (2019). Detection of Phytophthora infestans by LAMP, real-time LAMP and droplet digital PCR. Plant Disease, (ja).

Li, Z., Paul, R., Tis, T. B., Saville, A. C., Hansel, J., Ristaino, J., & Wei, Q. (2019). A Smartphone-Based Volatile Sensor Platform for Noninvasive Detection of Plant Pathogens. Plant Health 2019.

Paul, R., Saville, A., Hansel, J., Ye, Y., Ball, C., Williams, A., … others. (2019). Minimally Invasive Extraction of Plant DNA Via a Polymeric Microneedle Patch for on-Site Detection of Plant Pathogens. 2019 AIChE Annual Meeting. Presented at the AIChE.

Paul, R., Saville, A. C., Hansel, J., Ye, Y., Ball, C., Williams, A., … others. (2019). Microneedle-based Rapid Plant DNA Extraction: Towards In-Field Detection of Plant Pathogens. Plant Health 2019.

Tyrrell, J. D., Qurollo, B. A., Tornquist, S. J., Schlaich, K. G., Kelsey, J., Chandrashekar, R., & Breitschwerdt, E. B. (2019). Molecular identification of vector-borne organisms in Ehrlichia seropositive Nicaraguan horses and first report of Rickettsia felis infection in the horse. ACTA TROPICA, 200. https://doi.org/10.1016/j.actatropica.2019.105170

Allona, I., Kirst, M., Boerjan, W., Strauss, S., & Sederoff, R. (2019, October 11). Editorial: Forest Genomics and Biotechnology. FRONTIERS IN PLANT SCIENCE, Vol. 10. https://doi.org/10.3389/fpls.2019.01187

Tam, H. W., Hall, J. R., Messenger, Z. J., Jima, D. D., House, J. S., Linder, K., & Smart, R. C. (2019). C/EBP beta suppresses keratinocyte autonomous type 1 IFN response and p53 to increase cell survival and susceptibility to UVB-induced skin cancer. CARCINOGENESIS, 40(9), 1099–1109. https://doi.org/10.1093/carcin/bgz012

Saville, A., & Ristaino, J. B. (2019). Genetic Structure and Subclonal Variation of Extant and Recent U.S. Lineages of Phytophthora infestans. Phytopathology, 109(9), 1614–1627. https://doi.org/10.1094/PHYTO-09-18-0357-R

Wang, P., Nguyen, K. C., & Lindsey, J. S. (2019). Synthesis of the Ring C Pyrrole of Native Chlorophylls and Bacteriochlorophylls. JOURNAL OF ORGANIC CHEMISTRY, 84(17), 11286–11293. https://doi.org/10.1021/acs.joc.9b01650

Kennedy, K., Thomas, R., Durrant, J., Jiang, T., Motsinger-Reif, A., & Breen, M. (2019). Genome-wide DNA copy number analysis and targeted transcriptional analysis of canine histiocytic malignancies identifies diagnostic signatures and highlights disruption of spindle assembly complex. CHROMOSOME RESEARCH, 27(3), 179–202. https://doi.org/10.1007/s10577-019-09606-0

Noar, R. D., Thomas, E., Xie, D.-Y., Carter, M. E., Ma, D., & Daub, M. E. (2019). A polyketide synthase gene cluster associated with the sexual reproductive cycle of the banana pathogen, Pseudocercospora fijiensis. PLOS ONE, 14(7). https://doi.org/10.1371/journal.pone.0220319

Fisher, M. L., Levine, J. F., Guy, J. S., Mochizuki, H., Breen, M., Schal, C., & Watson, D. W. (2019). Lack of influence by endosymbiont Wolbachia on virus titer in the common bed bug, Cimex lectularius. PARASITES & VECTORS, 12(1). https://doi.org/10.1186/s13071-019-3694-2

Barnhart-Dailey, M., Zhang, Y., Zhang, R., Anthony, S. M., Aaron, J. S., Miller, E. S., … Timlin, J. A. (2019). Cellular localization of tolyporphins, unusual tetrapyrroles, in a microbial photosynthetic community determined using hyperspectral confocal fluorescence microscopy. Photosynthesis Research, 141(3), 259–271. https://doi.org/10.1007/s11120-019-00625-w

Wiley, C., Wise, C. F., & Breen, M. (2019). Novel Noninvasive Diagnostics. VETERINARY CLINICS OF NORTH AMERICA-SMALL ANIMAL PRACTICE, 49(5), 781-+. https://doi.org/10.1016/j.cvsm.2019.05.002

Isik, F., & McKeand, S. E. (2019). Fourth cycle breeding and testing strategy for Pinus taeda in the NC State University Cooperative Tree Improvement Program. TREE GENETICS & GENOMES, 15(5). https://doi.org/10.1007/s11295-019-1377-y

Gulbahar, M. Y., Karaca, E., Ciftci, A., Inal, S., Ahmed, I., Balakrishnan, N., & Breitshwerdt, E. (2019). Pyogranulomatous Myocarditis and Diaphragmatic Myositis Associated with Bartonella Henselae in a Cat From Turkey. Ankara Üniversitesi Veteriner Fakültesi Dergisi, 66(1), 103–107. https://doi.org/10.1501/vetfak_0000002894

Guo, Y., Xu, Z., Norcross, A. E., Taniguchi, M., & Lindsey, J. S. (2019). Developing a user community in the photosciences: a website for spectral data and access to PhotochemCAD. REPORTERS, MARKERS, DYES, NANOPARTICLES, AND MOLECULAR PROBES FOR BIOMEDICAL APPLICATIONS XI, Vol. 10893. https://doi.org/10.1117/12.2508077

Shalizi, M. N., Goldfarb, B., Burney, O. T., & Shear, T. H. (2019). Effects of Five Growing Media and Two Fertilizer Levels on Polybag-Raised Camden Whitegum (Eucalyptus benthamii Maiden & Cambage) Seedling Morphology and Drought Hardiness. FORESTS, 10(7). https://doi.org/10.3390/f10070543

Breitschwerdt, E., Jandt, U., & Bruelheide, H. (2019). Trait-performance relationships of grassland plant species differ between common garden and field conditions. Ecology and Evolution, 9(4), 1691–1701. https://doi.org/10.1002/ece3.4818

Barash, N. R., Thomas, B., Birkenheuer, A. J., Breitschwerdt, E. B., Lemler, E., & Qurollo, B. A. (2019). Prevalence of
            Babesia
            spp. and clinical characteristics of
            Babesia vulpes
            infections in North American dogs. Journal of Veterinary Internal Medicine, 7. https://doi.org/10.1111/jvim.15560

Lashnits, E., Grant, S., Thomas, B., Qurollo, B., & Breitschwerdt, E. B. (2019). Evidence for vertical transmission of Mycoplasma haemocanis, but not Ehrlichia ewingii, in a dog. Journal of Veterinary Internal Medicine, 33(4), 1747–1752. https://doi.org/10.1111/jvim.15517

Lara, L. A. de C., Santos, M. F., Jank, L., Chiari, L., Vilela, M. de M., Amadeu, R. R., … Garcia, A. A. F. (2019). Genomic Selection with Allele Dosage in Panicum maximum Jacq. G3-GENES GENOMES GENETICS, 9(8), 2463–2475. https://doi.org/10.1534/g3.118.200986

Liu, L., Shih, Y.-C. T., Strawderman, R. L., Zhang, D., Johnson, B. A., & Chai, H. (2019). [Review of Statistical Analysis of Zero-Inflated Nonnegative Continuous Data: A Review]. STATISTICAL SCIENCE, 34(2), 253–279. https://doi.org/10.1214/18-STS681

Tan, G. Z., Orndorff, P. E., & Shirwaiker, R. A. (2019). The Ion Delivery Manner Influences the Antimicrobial Efficacy of Silver Oligodynamic Iontophoresis. JOURNAL OF MEDICAL AND BIOLOGICAL ENGINEERING, 39(4), 622–631. https://doi.org/10.1007/s40846-018-0447-1

Giesbrecht, M., Haraldson, J., & Kaltofen, E. (2019). Computing Approximate Greatest Common Right Divisors of Differential Polynomials. Foundations of Computational Mathematics. https://doi.org/10.1007/s10208-019-09422-2

Paul, R., Saville, A. C., Hansel, J. C., Ye, Y., Ball, C., Williams, A., … Wei, Q. (2019). Extraction of Plant DNA by Microneedle Patch for Rapid Detection of Plant Diseases. ACS Nano, 13(6), 6540–6549. https://doi.org/10.1021/acsnano.9b00193

Ferguson, S. H., Foster, D. M., Sherry, B., Magness, S. T., Nielsen, D. M., & Gookin, J. L. (2019). Interferon-lambda 3 Promotes Epithelial Defense and Barrier Function Against Cryptosporidium parvum Infection. CELLULAR AND MOLECULAR GASTROENTEROLOGY AND HEPATOLOGY, 8(1), 1–20. https://doi.org/10.1016/j.jcmgh.2019.02.007

Liu, R., Vairaprakash, P., & Lindsey, J. S. (2019). Self-assembly with fluorescence readout in a free base dipyrrin-polymer triggered by metal ion binding in aqueous solution. NEW JOURNAL OF CHEMISTRY, 43(24), 9711–9724. https://doi.org/10.1039/c9nj01787a

Westbrook, J. W., James, J. B., Sisco, P. H., Frampton, J., Lucas, S., & Jeffers, S. N. (2019). Resistance to Phytophthora cinnamomi in American Chestnut (Castanea dentata) Backcross Populations that Descended from Two Chinese Chestnut (Castanea mollissima) Sources of Resistance. PLANT DISEASE, 103(7), 1631–1641. https://doi.org/10.1094/PDIS-11-18-1976-RE

Highfill, C. A., Baker, B. M., Stevens, S. D., Anholt, R. R. H., & Mackay, T. F. C. (2019). Genetics of cocaine and methamphetamine consumption and preference in Drosophila melanogaster. PLOS GENETICS, 15(5). https://doi.org/10.1371/journal.pgen.1007834

Wu, Z., Fujita, H., Magdaong, N. C. M., Diers, J. R., Hood, D., Allu, S., … Lindsey, J. S. (2019). New molecular design for blue BODIPYs. NEW JOURNAL OF CHEMISTRY, 43(19), 7233–7242. https://doi.org/10.1039/c9nj01114e

Fujita, H., Jing, H., Krayer, M., Allu, S., Veeraraghavaiah, G., Wu, Z., … Lindsey, J. S. (2019). Annulated bacteriochlorins for near- infrared photophysical studies. NEW JOURNAL OF CHEMISTRY, 43(19), 7209–7232. https://doi.org/10.1039/c9nj01113g

Pettersson, M., Frampton, J., Roennberg, J., Brurberg, M. B., & Talgo, V. (2019). Presence of Phytophthora species in Swedish Christmas tree plantations. EUROPEAN JOURNAL OF PLANT PATHOLOGY, 153(4), 1221–1236. https://doi.org/10.1007/s10658-018-01638-2

Lashnits, E. W., Dawson, D. E., Breitschwerdt, E., & Lanzas, C. (2019). Ecological and Socioeconomic Factors Associated with Bartonella henselae Exposure in Dogs Tested for Vector-Borne Diseases in North Carolina. Vector-Borne and Zoonotic Diseases, 19(8), 582–595. https://doi.org/10.1089/vbz.2018.2397

Izac, J. R., Camire, A. C., Earnhart, C. G., Embers, M. E., Funk, R. A., Breitschwerdt, E. B., & Marconi, R. T. (2019). Analysis of the antigenic determinants of the OspC protein of the Lyme disease spirochetes: Evidence that the C10 motif is not immunodominant or required to elicit bactericidal antibody responses. Vaccine, 37(17), 2401–2407. https://doi.org/10.1016/j.vaccine.2019.02.007

McKeand, S. E. (2019). The Evolution of a Seedling Market for Genetically Improved Loblolly Pine in the Southern United States. JOURNAL OF FORESTRY, 117(3), 293–301. https://doi.org/10.1093/jofore/fvz006

Alves, T. C. A., Tessmann, D. J., Ivors, K. L., Ristaino, J. B., & dos Santos, Á. F. (2019). Phytophthora acaciae sp. nov., a new species causing gummosis of black wattle in Brazil. Mycologia, 111(3), 445–455. https://doi.org/10.1080/00275514.2019.1575685

Qurollo, B. A., Buch, J., Chandrashekar, R., Beall, M. J., Breitschwerdt, E. B., Yancey, C. B., … Comyn, A. (2019). Clinicopathological findings in 41 dogs (2008‐2018) naturally infected with
            Ehrlichia ewingii. Journal of Veterinary Internal Medicine, 33(2), 618–629. https://doi.org/10.1111/jvim.15354

Breitschwerdt, E. B., Maggi, R. G., Quach, C., & Bradley, J. M. (2019). Bartonella spp. Bloodstream Infection in a Canadian Family. Vector-Borne and Zoonotic Diseases, 19(4), 234–241. https://doi.org/10.1089/vbz.2018.2353

Mylonakis, M. E., Harrus, S., & Breitschwerdt, E. B. (2019). [Review of An update on the treatment of canine monocytic ehrlichiosis (Ehrlichia canis)]. VETERINARY JOURNAL, 246, 45–53. https://doi.org/10.1016/j.tvjl.2019.01.015

Breitschwerdt, E. B., Greenberg, R., Maggi, R. G., Mozayeni, B. R., Lewis, A., & Bradley, J. M. (2019). Bartonella henselae Bloodstream Infection in a Boy With Pediatric Acute-Onset Neuropsychiatric Syndrome. Journal of Central Nervous System Disease, 11, 117957351983201. https://doi.org/10.1177/1179573519832014

Wang, Y., Wu, Y., Gong, Q., Ismayil, A., Yuan, Y., Lian, B., … Liu, Y. (2019). Geminiviral V2 Protein Suppresses Transcriptional Gene Silencing through Interaction with AGO4. JOURNAL OF VIROLOGY, 93(6). https://doi.org/10.1128/JVI.01675-18

Chaloupkova, K., Stejskal, J., El-Kassaby, Y. A., Frampton, J., & Lstiburek, M. (2019). Current Advances in Seed Orchard Layouts: Two Case Studies in Conifers. FORESTS, 10(2). https://doi.org/10.3390/f10020093

Yan, X., Liu, J., Kim, H., Liu, B., Huang, X., Yang, Z., … Chiang, V. L. (2019). CAD1 and CCR2 protein complex formation in monolignol biosynthesis in Populus trichocarpa. NEW PHYTOLOGIST, 222(1), 244–260. https://doi.org/10.1111/nph.15505

Qi, Q., Taniguchi, M., & Lindsey, J. S. (2019). Heuristics from Modeling of Spectral Overlap in Forster Resonance Energy Transfer (FRET). JOURNAL OF CHEMICAL INFORMATION AND MODELING, 59(2), 652–667. https://doi.org/10.1021/acs.jcim.8b00753

Yao, T.-C., Chung, R.-H., Lin, C.-Y., Tsai, P.-C., Chang, W.-C., Yeh, K.-W., … Huang, J.-L. (2019, March). Genetic loci determining total immunoglobulin E levels from birth through adulthood. https://doi.org/10.1111/all.13654

Noar, R. D., Thomas, E., & Daub, M. E. (2019). A novel polyketide synthase gene cluster in the plant pathogenic fungus Pseudocercospora fijiensis. PLOS ONE, 14(2). https://doi.org/10.1371/journal.pone.0212229

Kern, Z. T., Swartley, O. M., Neupane, P., Balakrishnan, N., & Breitschwerdt, E. B. (2019). Pasteurella canis infective endocarditis in a dog. Veterinary Microbiology, 229, 14–19. https://doi.org/10.1016/j.vetmic.2018.12.001

Liu, R., & Lindsey, J. S. (2019). Single-Polymer-Single-Cargo Strategy Packages Hydrophobic Fluorophores in Aqueous Solution with Retention of Inherent Brightness. ACS MACRO LETTERS, 8(1), 79–83. https://doi.org/10.1021/acsmacrolett.8b00907

Maggi, R. G., Toliver, M., Richardson, T., Mather, T., & Breitschwerdt, E. B. (2019). Regional prevalences of Borrelia burgdorferi, Borrelia bissettiae, and Bartonella henselae in Ixodes affinis, Ixodes pacificus and Ixodes scapularis in the USA. TICKS AND TICK-BORNE DISEASES, 10(2), 360–364. https://doi.org/10.1016/j.ttbdis.2018.11.015

Breitschwerdt, E. B., & Maggi, R. G. (2019). Bartonella quintana and Bartonella vinsonii subsp. vinsonii bloodstream co-infection in a girl from North Carolina, USA. MEDICAL MICROBIOLOGY AND IMMUNOLOGY, 208(1), 101–107. https://doi.org/10.1007/s00430-018-0563-0

Harbison, S. T., Kumar, S., Huang, W., McCoy, L. J., Smith, K. R., & Mackay, T. F. C. (2019). Genome-Wide Association Study of Circadian Behavior in Drosophila melanogaster. BEHAVIOR GENETICS, 49(1), 60–82. https://doi.org/10.1007/s10519-018-9932-0

Wang, J. P., Liu, B., Sun, Y., Chiang, V. L., & Sederoff, R. R. (2019). [Review of Enzyme-Enzyme Interactions in Monolignol Biosynthesis]. FRONTIERS IN PLANT SCIENCE, 9. https://doi.org/10.3389/fpls.2018.01942

Tyagi, P., Mathew, R., Opperman, C., Jameel, H., Gonzalez, R., Lucia, L., … Pal, L. (2019). High-Strength Antibacterial Chitosan-Cellulose Nanocrystal Composite Tissue Paper. LANGMUIR, 35(1), 104–112. https://doi.org/10.1021/acs.langmuir.8b02655