Works Published in 2010

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Displaying works 21 - 40 of 128 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2010 conference paper

Fifteen years after DSC and WLSS2 what parallel computations I do today

Proceedings of the 4th International Workshop on Parallel and Symbolic Computation - PASCO '10. Presented at the the 4th International Workshop.

By: E. Kaltofen n

Event: the 4th International Workshop

TL;DR: The paradigm of interactive symbolic supercomputing is proposed, a symbolic computation environment analog of the STAR-P Matlab platform, and multivariate sparse polynomial parallel interpolation constitutes a keystone operation, for which a new algorithm is presented. (via Semantic Scholar)
Source: Crossref
Added: August 18, 2019

2010 journal article

Glycine and a Glycine Dehydrogenase (GLDC) SNP as Citalopram/Escitalopram Response Biomarkers in Depression: Pharmacometabolomics-Informed Pharmacogenomics

Clinical Pharmacology & Therapeutics, 89(1), 97–104.

By: Y. Ji*, S. Hebbring*, H. Zhu n, G. Jenkins*, J. Biernacka*, K. Snyder*, M. Drews*, O. Fiehn* ...

MeSH headings : Biomarkers, Pharmacological / blood; Cell Line; Chromosomes, Human, Pair 9 / genetics; Citalopram / therapeutic use; DNA-Binding Proteins / metabolism; Depressive Disorder, Major / blood; Depressive Disorder, Major / drug therapy; Depressive Disorder, Major / genetics; Drug Monitoring / methods; Female; Genetic Association Studies; Glycine / blood; Glycine / metabolism; Glycine Dehydrogenase (Decarboxylating) / genetics; Humans; Introns / genetics; Linkage Disequilibrium; Male; Metabolome / drug effects; Nuclear Proteins / metabolism; Polymorphism, Single Nucleotide; Selective Serotonin Reuptake Inhibitors / therapeutic use
TL;DR: A possible role for glycine in SSRI response is highlighted and the use of pharmacometabolomics‐informed pharmacogenomic research strategy to identify citalopram/escitaloprams treatment outcome biomarkers is illustrated to “inform” pharmacogenomics. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Crossref
Added: July 28, 2019

2010 journal article

Lipidomic analysis of variation in response to simvastatin in the Cholesterol and Pharmacogenetics Study

Metabolomics, 6(2), 191–201.

By: R. Kaddurah-Daouk*, R. Baillie*, H. Zhu n, Z. Zeng n, M. Wiest*, U. Nguyen*, S. Watkins*, R. Krauss

author keywords: Cardiovascular disease; Lipidomics; Metabolomics; Pharmacogenomics; Pharmacometabolomics; Simvastatin
TL;DR: There was no overlap of lipids whose changes correlated with LDL-C or CRP responses to simvastatin suggesting that distinct metabolic pathways govern statin effects on these two biomarkers. (via Semantic Scholar)
Source: Crossref
Added: July 20, 2019

2010 journal article

IFN-α expression and antiviral effects are subtype and cell type specific in the cardiac response to viral infection

Virology, 396(1), 59–68.

By: L. Li n & B. Sherry n

author keywords: Interferon; Cardiac myocyte; Cardiac fibroblast; Myocarditis; Reovirus
MeSH headings : Animals; Base Sequence; Cells, Cultured; Interferon-alpha / classification; Interferon-alpha / genetics; Interferon-alpha / physiology; Mice; Molecular Sequence Data; Myocarditis / prevention & control; Myocarditis / virology; Reverse Transcriptase Polymerase Chain Reaction; Transcription Factors / genetics; Virus Diseases / prevention & control
TL;DR: It is demonstrated that IFN-alpha is induced in cardiac cells, that it is both subtype and cell type specific, and thatIt is likely important in the antiviral cardiac response. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Crossref
Added: July 20, 2019

2010 conference paper

Ex situ seed collection represents genetic variation present in natural stands of Carolina hemlock

Proceedings of the Fifth Symposium on Hemlock Woolly Adelgid in the Eastern United States, 181–190.

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Making scents of behavioural genetics: lessons from Drosophila

GENETICS RESEARCH, 92(5-6), 349–359.

By: R. Anholt n

MeSH headings : Animals; Behavior, Animal; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Gene Regulatory Networks; Genetic Linkage; Genetics, Behavioral; Humans; Olfactory Perception
TL;DR: This review focuses on olfactory behaviour in Drosophila with the goal to illustrate how fundamental insights derived from studies on chemosensation can be applied to a wide range of behavioural phenotypes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2010 review

Post-transcriptional control by bacteriophage T4: mRNA decay and inhibition of translation initiation

[Review of ]. VIROLOGY JOURNAL, 7.

By: M. Uzan* & E. Miller n

MeSH headings : Bacteriophage T4 / genetics; Gene Expression Regulation; Protein Biosynthesis; RNA Processing, Post-Transcriptional; RNA Stability / genetics; RNA, Messenger / genetics; RNA, Messenger / metabolism
TL;DR: The past 10 - 15 year literature on RNA-protein interactions with T4 and some of its related phages is compiled, with particular focus on advances in mRNA decay and processing, and on translational repression. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2010 journal article

PCR amplification of Bartonella koehlerae from human blood and enrichment blood cultures

Parasites & Vectors, 3(1), 76.

By: E. Breitschwerdt n, R. Maggi n, B. Robert Mozayeni, B. Hegarty n, J. Bradley n & P. Mascarelli n

TL;DR: The results of this study suggest that B. koehlerae bacteremia is more common in immunocompetent people than has been previously suspected. (via Semantic Scholar)
Sources: Crossref, ORCID, NC State University Libraries
Added: August 6, 2018

2010 journal article

Mature Hair Follicles Generated from Dissociated Cells: A Universal Mechanism of Folliculoneogenesis

DEVELOPMENTAL DYNAMICS, 239(10), 2619–2626.

By: Y. Zheng, A. Nace, W. Chen, K. Watkins, L. Sergott, Y. Homan, J. Vandeberg*, M. Breen n, K. Stenn

author keywords: hair follicle; morphogenesis; organogenesis
MeSH headings : Animals; Cell Cycle / genetics; Cell Cycle / physiology; Dogs; Hair Follicle / cytology; Hair Follicle / embryology; Humans; Opossums; Organogenesis / genetics; Organogenesis / physiology; Rats; Skin / cytology; Skin / metabolism
TL;DR: There is essentially one way by which dissociated mammalian skin cells form a new hair follicle in vivo and that this mechanism has been highly conserved, according to Developmental Dynamics 239:2619–2626. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Lignin and Biomass: A Negative Correlation for Wood Formation and Lignin Content in Trees

PLANT PHYSIOLOGY, 154(2), 555–561.

MeSH headings : Biomass; Gene Expression Regulation, Plant; Lignin / biosynthesis; Lignin / chemistry; Transcription Factors / metabolism; Trees / genetics; Trees / growth & development; Trees / metabolism; Wood / genetics; Wood / growth & development; Wood / metabolism
TL;DR: Studies in populations of forest tree hybrids have shown a negative correlation of biomass growth and lignin content, implying that selection for biomass growth may be highly regulated. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Genetic variation of stem forking in loblolly pine

Forest Science, 56(5), 429–436.

Source: NC State University Libraries
Added: August 6, 2018

2010 journal article

Efficiently Certifying Non-Integer Powers

COMPUTATIONAL COMPLEXITY, 19(3), 355–366.

By: E. Kaltofen n & M. Lavin n

author keywords: Integer roots; integer powers; linear-time algorithm; bit complexity; Chebotarev density theorem
TL;DR: A randomized algorithm that, given an integer a, produces a certificate that the integer is not a pure power of an integer in expected (log a)1+o(1) bit operations under the assumption of the Generalized Riemann Hypothesis is described. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Discovery of a minimal form of RNase P in Pyrobaculum

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 107(52), 22493–22498.

author keywords: catalytic RNA; gene finding; RNA processing
MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / isolation & purification; Archaeal Proteins / metabolism; Base Sequence; Biocatalysis; Computational Biology / methods; Electrophoresis, Polyacrylamide Gel; Genome, Archaeal / genetics; Molecular Sequence Data; Nucleic Acid Conformation; Pyrobaculum / classification; Pyrobaculum / enzymology; Pyrobaculum / genetics; RNA Precursors / chemistry; RNA Precursors / genetics; RNA Precursors / metabolism; RNA, Archaeal / genetics; RNA, Archaeal / metabolism; RNA, Catalytic / genetics; RNA, Catalytic / metabolism; RNA, Transfer / chemistry; RNA, Transfer / genetics; RNA, Transfer / metabolism; Ribonuclease P / genetics; Ribonuclease P / isolation & purification; Ribonuclease P / metabolism; Sequence Homology, Nucleic Acid; Species Specificity; Substrate Specificity
TL;DR: An effective combination of next-generation RNA sequencing, computational genomics, and biochemistry is illustrated to identify a divergent, formerly undetectable variant of an essential noncoding RNA gene. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Basal Signaling Regulates Plant Growth and Development

PLANT PHYSIOLOGY, 154(2), 439–443.

MeSH headings : Plant Development; Plant Physiological Phenomena; Second Messenger Systems
TL;DR: The term signal transduction refers to the classical paradigm where an external stimulus is sensed and initiates an increase in second messengers and each second messenger transmits and amplifies the signal by activating a subset of downstream pathways. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science; OpenAlex)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2010 article

Autophosphorylation of Tyr-610 in the receptor kinase BAK1 plays a role in brassinosteroid signaling and basal defense gene expression (Retracted article. See vol. 113, pg. E3987, 2016)

Oh, M.-H., Wang, X., Wu, X., Zhao, Y., Clouse, S. D., & Huber, S. C. (2010, October 12). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 107, pp. 17827–17832.

By: M. Oh*, X. Wang n, X. Wu*, Y. Zhao*, S. Clouse n & S. Huber*

author keywords: basal immunity; flagellin signaling; receptor-like kinase; tyrosine phosphorylation; phosphospecific antibodies
MeSH headings : Apoptosis / physiology; Arabidopsis / immunology; Arabidopsis / microbiology; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Immunoblotting; Microarray Analysis; Mutagenesis, Site-Directed; Phosphorylation; Plants, Genetically Modified; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Pseudomonas syringae / growth & development; Signal Transduction / physiology; Tyrosine / metabolism
TL;DR: Results indicate thatosphorylation of Tyr-610 is required for some but not all functions of BAK1, and adds significantly to the emerging notion that tyrosine phosphorylation could play an important role in plant receptor kinase signaling. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2010 journal article

Activation Energies for Oxidation of Porphyrin Monolayers Anchored to Au(111)

LANGMUIR, 26(20), 15718–15721.

By: J. Jiao*, M. Taniguchi n, J. Lindsey n & D. Bocian*

TL;DR: The activation energy for the oxidation of porphyrin monolayers anchored to gold surfaces is determined via measurement of the temperature dependence of the electron-transfer rates. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 review

Unifying Themes in Microbial Associations with Animal and Plant Hosts Described Using the Gene Ontology

[Review of ]. MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 74(4), 479–503.

By: T. Torto-Alalibo*, C. Collmer*, M. Gwinn-Giglio*, M. Lindeberg*, S. Meng n, M. Chibucos*, T. Tseng*, J. Lomax* ...

Contributors: T. Torto-Alalibo*, C. Collmer*, M. Gwinn-Giglio*, M. Lindeberg*, S. Meng n, M. Chibucos*, T. Tseng*, J. Lomax* ...

MeSH headings : Animals; Bacteria / genetics; Bacteria / metabolism; Bacterial Physiological Phenomena; Cell Adhesion; Computational Biology / methods; Fungi / genetics; Fungi / metabolism; Fungi / physiology; Host-Pathogen Interactions / genetics; Host-Pathogen Interactions / immunology; Plants / immunology; Plants / microbiology; Protein Transport; Symbiosis / genetics; Symbiosis / immunology; Virulence Factors
TL;DR: Some unifying themes common to diverse host-microbe associations are reviewed and areas where new terms need to be developed are highlighted, an ongoing process that should involve the whole community. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018

2010 review

Genomes of the T4-related bacteriophages as windows on microbial genome evolution

[Review of ]. VIROLOGY JOURNAL, 7.

By: V. Petrov, S. Ratnayaka*, J. Nolan*, E. Miller n & J. Karam*

MeSH headings : Bacteriophages / genetics; Biological Evolution; DNA, Viral / chemistry; DNA, Viral / genetics; Evolution, Molecular; Genetic Variation; Genome, Viral; Molecular Sequence Data; Sequence Analysis, DNA
TL;DR: The high degree of genetic heterogeneity that exists outside of this shared core suggests that horizontal DNA transfer involving many genetic sources has played a major role in diversification of the T4-related phages and their spread to a wide spectrum of bacterial species domains in evolution. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 journal article

Excited-State Photodynamics of Perylene-Porphyrin Dyads 5 Tuning Light-Harvesting Characteristics via Perylene Substituents, Connection Motif, and Three-Dimensional Architecture

JOURNAL OF PHYSICAL CHEMISTRY B, 114(45), 14249–14264.

By: C. Kirmaier n, H. Song n, E. Yang n, J. Schwartz n, E. Hindin n, J. Diers n, R. Loewe n, K. Tomizaki n ...

TL;DR: This study has identified suitable perylene-porphyrin constructs for use in light-harvesting applications and identified the monophenoxy perylene with an N-imide diphenylethyne linker is superior in providing rapid and essentially quantitative energy transfer from excited perylene to zinc porphyrin with minimal electron-transfer quenching in both toluene and benzonitrile. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2010 article

Bacteriophage T4 and its relatives

Karam, J. D., & Miller, E. S. (2010, October 28). VIROLOGY JOURNAL, Vol. 7.

By: J. Karam* & E. Miller n

TL;DR: The review series to be published in Virology Journal will emphasize advances and seminal discoveries in four major areas of T4 research: Genomics, Gene Expression, DNA Replication and Phage Morphogenesis. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

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