Works Published in 2013
Displaying works 21 - 40 of 107 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2013 book
Worldwide Migrations, Host Shifts, and Reemergence of Phytophthora Infestans, the Plant Destroyer
In Evolution of Virulence in Eukaryotic Microbes (pp. 192–207).
Contributors: J. Ristaino*
TL;DR:
This chapter provides an overview of the emergence of potato late blight in the 19th century and the evolutionary position, life.
(via Semantic Scholar)
Source: ORCID
Added: December 19, 2019
2013 conference paper
Sparse multivariate function recovery from values with noise and outlier errors
Proceedings of the 38th international symposium on International symposium on symbolic and algebraic computation - ISSAC '13. Presented at the the 38th international symposium.
Event: the 38th international symposium
TL;DR:
This work gives a different univariate solution based on structured linear algebra that yields a stable decoder with floating point arithmetic that can build a sparse model from a number of evaluations that is linear in the sparsity of the model.
(via Semantic Scholar)
Source: Crossref
Added: July 27, 2019
2013 journal article
Improved Sparse Multi-Class SVM and Its Application for Gene Selection in Cancer Classification
Cancer Informatics, 12, CIN.S10212.
author keywords: support vector machine (SVM); multi-class SVM; variable selection; shrinkage methods; classification; microarray; cancer classification
TL;DR:
The method is improved by introducing soft-thresholding type penalties to incorporate variable selection into multi-class classification for high dimensional data and demonstrates that the new methods can select a small number of genes for building accurate multi- class classification rules.
(via Semantic Scholar)
doi.org (publisher)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Crossref
Added: July 20, 2019
2013 journal article
Understanding the Role of Proteolytic Digestion on Discovery and Targeted Proteomic Measurements Using Liquid Chromatography Tandem Mass Spectrometry and Design of Experiments
JOURNAL OF PROTEOME RESEARCH, 12(12), 5820–5829.
author keywords: design of experiments; proteolytic digestion; LC-MS/MS; Populus trichocarpa
MeSH headings : Amino Acid Sequence; Animals; Cattle; Chromatography, Liquid / standards; Factor Analysis, Statistical; Hydrogen-Ion Concentration; Isotope Labeling; Molecular Sequence Annotation; Molecular Sequence Data; Peptide Fragments / chemistry; Peptide Fragments / isolation & purification; Plant Proteins / chemistry; Plant Proteins / isolation & purification; Populus / chemistry; Protein Stability; Proteolysis; Proteomics / methods; Proteomics / standards; Research Design; Swine; Tandem Mass Spectrometry / standards; Trypsin / chemistry; Xylem / chemistry
TL;DR:
The tryptic digest optimization described here has eliminated this previously observed peptide decay as well as provided a greater understanding and standardization for a common but critical sample treatment used across the field of proteomics.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
The BRASSINOSTEROID INSENSITIVE1-LIKE3 Signalosome Complex Regulates Arabidopsis Root Development
PLANT CELL, 25(9), 3377–3388.
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Cell Cycle; Chromatography, Liquid; Gene Expression Regulation, Plant; Genes, Reporter; Multiprotein Complexes; Mutation; Phenotype; Phloem / cytology; Phloem / genetics; Phloem / growth & development; Phloem / metabolism; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Plant Roots / metabolism; Plants, Genetically Modified; Protein Interaction Mapping; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Receptors, Cell Surface / genetics; Receptors, Cell Surface / metabolism; Recombinant Fusion Proteins; Signal Transduction; Tandem Mass Spectrometry
TL;DR:
Genetic analysis of brl1 brl3 bak1-3 triple mutants revealed that BAK1, BRL1, and BRL3 signaling modulate root growth and development by contributing to the cellular activities of provascular and quiescent center cells, highlighting that immunoprecipitation of leucine-rich repeat receptor kinases in plants is a powerful approach for unveiling signaling mechanisms with cellular resolution in plant development.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
The Amborella Genome and the Evolution of Flowering Plants
SCIENCE, 342(6165), 1467-+.
MeSH headings : Conservation of Natural Resources; Contig Mapping; Evolution, Molecular; Flowers / genetics; Gene Duplication; Genetic Variation; Genome, Plant; Metagenomics / statistics & numerical data; Molecular Sequence Annotation; Multigene Family; New Caledonia; Phylogeny; Sequence Analysis, DNA; Tracheophyta / classification; Tracheophyta / genetics; Tracheophyta / growth & development
TL;DR:
Genome structure and phylogenomic analyses indicate that the ancestral Angiosperm was a polyploid with a large constellation of both novel and ancient genes that survived to play key roles in angiosperm biology.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Specificity of the receptor for the major sex pheromone component in Heliothis virescens
Journal of Insect Science (Tucson, AZ), 13.
MeSH headings : Animals; Animals, Genetically Modified / genetics; Animals, Genetically Modified / physiology; Arthropod Antennae / physiology; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Gene Expression; Insect Proteins / genetics; Insect Proteins / metabolism; Molecular Sequence Data; Moths / genetics; Moths / physiology; Receptors, Odorant / genetics; Receptors, Odorant / metabolism; Sensilla / physiology; Sequence Alignment; Sequence Analysis, DNA; Sex Attractants / metabolism; Sexual Behavior, Animal
TL;DR:
Interestingly, a mutation leading to truncation in the HvOR13 C-terminal region affected but did not abolish pheromone receptor response to Z11-16:Ald, and the role of the C- terminal domain in receptor function is discussed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(OpenAlex)
Source: NC State University Libraries
Added: August 6, 2018
2013 journal article
SND1 Transcription Factor-Directed Quantitative Functional Hierarchical Genetic Regulatory Network in Wood Formation in Populus trichocarpa
PLANT CELL, 25(11), 4324–4341.
MeSH headings : Algorithms; Cell Wall / genetics; Chromatin Immunoprecipitation; Gene Expression Regulation, Plant; Gene Ontology; Gene Regulatory Networks; High-Throughput Nucleotide Sequencing; Models, Genetic; Plant Proteins / genetics; Plant Proteins / metabolism; Plants, Genetically Modified; Polymerase Chain Reaction / methods; Populus / genetics; Populus / metabolism; Protoplasts; Reproducibility of Results; Transcription Factors / genetics; Transcription Factors / metabolism; Transfection; Wood / genetics; Wood / metabolism; Xylem / cytology; Xylem / genetics
TL;DR:
A genome-wide high-throughput system for the discovery and validation of specific transcription factor (TF)–directed hierarchical gene regulatory networks (hGRNs) in wood formation is developed and may be particularly useful to study hGRNs in complex processes in plant species resistant to stable genetic transformation and where mutants are unavailable.
(via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Polymeric Systems Incorporating Plant Viral Nanoparticles for Tailored Release of Therapeutics
ADVANCED HEALTHCARE MATERIALS, 2(7), 1001–1007.
author keywords: controlled release; drug delivery; nanofibers; plant viral nanoparticles; virus
MeSH headings : Antineoplastic Agents / administration & dosage; Doxorubicin / administration & dosage; Drug Carriers; Kinetics; Nanoparticles; Plant Viruses; Polymers
TL;DR:
Kinetic analysis results suggest a two‐phase release profile with the first phase following a hindered Fickian transport mechanism for the release of Dox for the polymer‐embedded PVNs and the nanofiber matrices that incorporate PVNs through the immersion processing method followed a pseudo‐first order kinetic transport mechanism.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Lengthening the Intersubunit Linker of Procaspase 3 Leads to Constitutive Activation
BIOCHEMISTRY, 52(36), 6219–6231.
MeSH headings : Apoptosis / physiology; Caspase 3 / chemistry; Caspase 3 / genetics; Caspase 3 / metabolism; Caspase Inhibitors / pharmacology; Catalytic Domain; Enzyme Activation; Enzyme Precursors / chemistry; Models, Chemical; Models, Molecular; Molecular Dynamics Simulation; Protein Conformation; Protein Multimerization
TL;DR:
The data show that releasing the strain of the short IL is not sufficient to populate the active conformer of the native ensemble, and it is shown that increasing the length of the IL by introducing 3-5 alanines results in constitutively active procaspases.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Phosphatidylinositol 4,5-Bisphosphate Influences PIN Polarization by Controlling Clathrin-Mediated Membrane Trafficking in Arabidopsis
PLANT CELL, 25(12), 4894–4911.
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / analysis; Arabidopsis Proteins / metabolism; Biological Transport; Cell Polarity; Clathrin-Coated Vesicles / physiology; Endocytosis; Green Fluorescent Proteins / analysis; Indoleacetic Acids / metabolism; Membrane Transport Proteins / analysis; Membrane Transport Proteins / metabolism; Mutation; Phenotype; Phosphatidylinositol 4,5-Diphosphate / physiology; Phosphotransferases (Alcohol Group Acceptor) / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
On the Matrix Berlekamp-Massey Algorithm
ACM TRANSACTIONS ON ALGORITHMS, 9(4).
author keywords: Linear generated sequences; matrix polynomials; minimal generators; vector Berlekamp/Massey algorithm; multivariable linear control
TL;DR:
This work analyzes the Matrix Berlekamp/Massey algorithm and gives new proofs of correctness and complexity for the algorithm, which is based on self-contained loop invariants and includes an explicit termination criterion for a given determinantal degree bound of the minimal matrix generator.
(via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Experimental infection of dogs with Bartonella henselae and Bartonella vinsonii subsp. berkhoffii
Veterinary Immunology and Immunopathology, 156(1-2), 153–158.
author keywords: PCR; Bacteria; Bartonella henselae SA2; Bartonella vinsonii subsp berkhoffii genotype III; Isolation; Dog model
MeSH headings : Animals; Antibodies, Bacterial / blood; Bacteremia / immunology; Bacteremia / microbiology; Bacteremia / veterinary; Bartonella Infections / immunology; Bartonella Infections / microbiology; Bartonella henselae / immunology; DNA, Bacterial / analysis; Dog Diseases / immunology; Dog Diseases / microbiology; Dogs
TL;DR:
Following intradermal infection, sequestration of Bartonella spp.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018
2013 journal article
The Evolutionary Genetics of the Genes Underlying Phenotypic Associations for Loblolly Pine (Pinus taeda, Pinaceae)
GENETICS, 195(4), 1353-+.
author keywords: association mapping; complex traits; Pinus taeda; natural selection; population genomics
MeSH headings : Evolution, Molecular; Expressed Sequence Tags; Genes, Plant; Genetic Loci; Multifactorial Inheritance; Phenotype; Pinus taeda / genetics
TL;DR:
It is shown that loci associated with phenotypic traits are distinct with regard to neutral expectations, and the ramifications of this result are discussed in light of the continued efforts to dissect the genetic basis of quantitative traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Synthesis and photophysical properties of chlorins bearing 0–4 distinct meso-substituents
Photochemical & Photobiological Sciences, 12(12), 2089.
MeSH headings : Cyclization; Magnetic Resonance Spectroscopy; Metalloporphyrins / chemical synthesis; Metalloporphyrins / chemistry; Models, Molecular; Oxidation-Reduction; Pheophytins / chemistry; Quantum Theory; Spectrometry, Fluorescence; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization
TL;DR:
Density functional theory calculations show that of the frontier molecular orbitals of the chlorin, the energy of the HOMO-1 is the most affected by meso-aryl substituents, undergoing progressive destabilization as the number of meso -aryl groups is increased.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Crossref, ORCID, NC State University Libraries
Added: August 6, 2018
2013 article
Naturally occuring canine cancers: powerful models for stimulating pharmacogenomic advancement in human medicine
Rotroff, D. M., Thomas, R., Breen, M., & Motsinger-Reif, A. A. (2013, December). PHARMACOGENOMICS, Vol. 14, pp. 1929–1931.
author keywords: cancer; canine model; chemotherapy; clinical trials
MeSH headings : Animals; Disease Models, Animal; Dogs; Humans; Neoplasms / drug therapy; Neoplasms / pathology; Pharmacogenetics / methods
TL;DR:
Dogs exhibit a wide variety of spontaneous cancers that share extensive clinicopathologic features with those of human patients, offering a unique opportunity for comparative analysis of cancer etiology and pharmacogenomics.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Enumeration of Virtual Libraries of Combinatorial Modular Macrocyclic (Bracelet, Necklace) Architectures and Their Linear Counterparts
JOURNAL OF CHEMICAL INFORMATION AND MODELING, 53(9), 2203–2216.
MeSH headings : Algorithms; Combinatorial Chemistry Techniques; Informatics / methods; Isomerism; Macrocyclic Compounds / chemistry; Software; User-Computer Interface
TL;DR:
A software program has been developed to determine the number, identity, and relative amounts of linear and cyclic architectures from a given number and ratio of reacting monomers.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2013 journal article
(R)-nicotine biosynthesis, metabolism and translocation in tobacco as determined by nicotine demethylase mutants
PHYTOCHEMISTRY, 95, 188–196.
author keywords: Nicotiana tabacum L.; Tobacco; Solanaceae; (R)-nicotine; Nornicotine; Enantioselectivity; Nicotine demethylase
MeSH headings : Biological Transport; Cytochrome P-450 Enzyme System / metabolism; Methylation; Mutation; Nicotine / analogs & derivatives; Nicotine / biosynthesis; Nicotine / metabolism; Plant Leaves / metabolism; Plant Proteins / metabolism; Plant Roots / metabolism; Tobacco / enzymology; Tobacco / metabolism
TL;DR:
The results confirmed the enantioselectivity of three nicotine demethylases in planta, could be used to predict the changes of nicotine and nornicotine composition, and may facilitate demethylase discovery in the future.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2013 review
The evolving role of the orphan nuclear receptor ftz-f1, a pair-rule segmentation gene
[Review of ]. EVOLUTION & DEVELOPMENT, 15(6), 406–417.
MeSH headings : Animals; Drosophila melanogaster / metabolism; Evolution, Molecular; Gene Expression Regulation, Developmental; Insect Proteins / chemistry; Insect Proteins / genetics; Insect Proteins / metabolism; Orphan Nuclear Receptors / chemistry; Orphan Nuclear Receptors / genetics; Orphan Nuclear Receptors / metabolism; Tribolium / embryology; Tribolium / genetics; Tribolium / metabolism
TL;DR:
It is proposed that the dependence of Dm‐Ftz‐F1 on interaction with the homeodomain protein Ftz which is expressed in stripes in Drosophila, loosened constraints on DM‐ftz‐f1 expression, allowing for ubiquitous expression of this pair‐rule gene in Dosophila.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2013 journal article
Serendipitous synthetic entree to tetradehydro analogues of cobalamins
New Journal of Chemistry, 37(12), 3964–3975.
Source: NC State University Libraries
Added: August 6, 2018
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