Works Published in 2004

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Displaying works 81 - 100 of 173 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2004 journal article

A family of anti-sigma(70) proteins in T4-type phages and bacteria that are similar to AsiA, a transcription inhibitor and co-activator of bacteriophage T4

JOURNAL OF MOLECULAR BIOLOGY, 344(5), 1183–1197.

By: M. Pineda*, B. Gregory*, B. Szczypinski n, K. Baxter*, A. Hochschild*, E. Miller n, D. Hinton*

author keywords: phage; AsiA; Rsd; AlgQ; transcription
MeSH headings : Amino Acid Sequence; Bacteriophage T4 / chemistry; Bacteriophage T4 / genetics; Cell Proliferation; DNA-Binding Proteins / metabolism; DNA-Directed RNA Polymerases / metabolism; Escherichia coli Proteins / chemistry; Escherichia coli Proteins / metabolism; Gene Expression Regulation; Holoenzymes / chemistry; Holoenzymes / metabolism; Molecular Sequence Data; Multigene Family; Multiprotein Complexes; Phenylalanine / genetics; Phenylalanine / metabolism; Protein Binding; Repressor Proteins / chemistry; Repressor Proteins / metabolism; Sequence Alignment; Sigma Factor / metabolism; Transcription Factors / metabolism; Transcription, Genetic; Two-Hybrid System Techniques; Viral Proteins / chemistry; Viral Proteins / genetics; Viral Proteins / metabolism
TL;DR: It is speculated that the phage AsiA orthologs, Rsd, and AlgQ are members of a related family in T4-type phage and bacteria, which interact similarly with primary sigma factors. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 journal article

Variation an transcript abundance during somatic embryogenesis in gymnosperms

TREE PHYSIOLOGY, 24(10), 1073–1085.

By: C. Stasolla*, P. Bozhkov*, T. Chu*, L. Van Zyl n, U. Egertsdotter, M. Suarez*, D. Craig n, R. Wolfinger*, S. Von Arnold*, R. Sederoff n

author keywords: embryo development; gene expression; hybridization; microarray; Picea abies; Pinus taeda
MeSH headings : Cycadopsida / genetics; Cycadopsida / physiology; Gene Expression Regulation, Plant / physiology; Genetic Variation / physiology; Oligonucleotide Array Sequence Analysis; Picea / genetics; Picea / physiology; Seeds / genetics; Seeds / physiology; Transcription, Genetic / physiology; Trees / genetics; Trees / physiology
TL;DR: Comparison of transcript levels between successive stages of embryogenesis allowed us to identify several genes that showed unique expression responses during normal development, including proteins involved in detoxification processes, methionine synthesis and utilization, and carbohydrate metabolism. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2004 review

The evolution of molecular genetic pathways and networks

[Review of ]. BIOESSAYS, 26(5), 479–484.

MeSH headings : Animals; Evolution, Molecular; Genomics; Humans; Models, Genetic; Molecular Biology; Phenotype
TL;DR: Investigations on the relationships between network organization, topological architecture and evolutionary dynamics provide intriguing hints as to how networks evolve. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2004 review

Reprogramming plant gene expression: a prerequisite to geminivirus DNA replication

[Review of ]. MOLECULAR PLANT PATHOLOGY, 5(2), 149–156.

By: L. Hanley-Bowdoin*, S. Settlage* & D. Robertson n

TL;DR: Recent experiments showing that geminiviruses also modulate components of the retinoblastoma/E2F transcription regulatory network to induce quiescent plant cells to re-enter the cell cycle and regain the capacity to support high levels of DNA replication are discussed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 review

Quantitative genetic analyses of complex behaviours in Drosophila

[Review of ]. NATURE REVIEWS GENETICS, 5(11), 838–849.

MeSH headings : Animals; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Gene Expression Profiling; Genetics, Behavioral; Genotype; Phenotype; Sex Characteristics; Transcription, Genetic
TL;DR: Drosophila melanogaster provides an attractive system for elucidating the unifying principles of the genetic architectures that drive behaviours, as genetically identical individuals can be reared rapidly in controlled environments and extensive publicly accessible genetic resources are available. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Porphyrin architectures tailored for studies of molecular information storage

JOURNAL OF ORGANIC CHEMISTRY, 69(20), 6739–6750.

TL;DR: A collection of molecules enables a variety of studies to elucidate design issues in molecular-based information storage and enables investigation of on-chip patterning of the electrolyte. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 journal article

Phytophthora root rot mortality in fraser fir seedlings

HortScience, 39(5), 1025–1026.

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Oral immunization with recombinant Listeria monocytogenes controls virus load after vaginal challenge with feline immunodeficiency virus

JOURNAL OF VIROLOGY, 78(15), 8210–8218.

By: R. Stevens, K. Howard n, S. Nordone, M. Burkhard* & G. Dean*

MeSH headings : Administration, Oral; Animals; Antibodies, Viral / biosynthesis; Cats; Feline Acquired Immunodeficiency Syndrome / prevention & control; Feline Acquired Immunodeficiency Syndrome / virology; Female; Gene Products, gag / genetics; Gene Products, gag / immunology; Immunization; Immunodeficiency Virus, Feline / isolation & purification; Immunoglobulin A / biosynthesis; Immunoglobulin G / biosynthesis; Intestinal Mucosa / immunology; Listeria monocytogenes / genetics; Lymph Nodes / immunology; Lymphocyte Depletion; Proviruses / isolation & purification; Vaccines, Synthetic / immunology; Viral Load; Viral Vaccines / immunology
TL;DR: It is demonstrated that recombinant L. monocytogenes conferred some control of viral load after vaginal challenge with FIV, using the feline immunodeficiency virus (FIV) model of HIV. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Mist, substrate water potential and cutting water potential influence rooting of stem cuttings of loblolly pine

TREE PHYSIOLOGY, 24(7), 823–831.

author keywords: adventitious rooting; clonal forestry; Pinus taeda; vegetative propagation; soil water deficit; water relations; water stress
MeSH headings : Atmosphere; Pinus / growth & development; Pinus / physiology; Plant Roots / growth & development; Plant Stems / physiology; Trees / growth & development; Trees / physiology; Water
TL;DR: It is concluded that the rooting environment should impose a moderate water stress on loblolly pine stem cuttings to achieve optimum rooting. (via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Metabolic profiling: A new tool in the study of wood formation

JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY, 52(6), 1427–1434.

By: C. Morris n, J. Scott n, H. Chang n, R. Sederoff n, . D O'Malley & J. Kadla n

author keywords: metabolic profiling; principal component analysis (PCA); loblolly pine; xylem tissue; lipid metabolites; polar metabolites
MeSH headings : Cellulose / analysis; Gas Chromatography-Mass Spectrometry; Genotype; Lipid Metabolism; Phenotype; Pinus taeda / chemistry; Pinus taeda / genetics; Pinus taeda / metabolism; Plant Extracts / chemistry; Wood
TL;DR: The first application of metabolic profiling on differentiating xylem tissue of loblolly pine is reported, demonstrating the use of metabolic profiles for the study of wood-forming tissue and as a tool in functional genomics. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Deterministic distinct-degree factorization of polynomials over finite fields

JOURNAL OF SYMBOLIC COMPUTATION, 38(6), 1461–1470.

By: S. Gao*, E. Kaltofen n & A. Lauder*

author keywords: multivariate polynomial; deterministic algorithm; distinct-degree factorization
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Construction and evaluation of cDNA libraries for large-scale expressed sequence tag sequencing in wheat (Triticum aestivum L.)

GENETICS, 168(2), 595–608.

By: D. Zhang*, D. Choi*, S. Wanamaker*, R. Fenton*, A. Chin*, M. Malatrasi*, Y. Turuspekov*, H. Walia* ...

MeSH headings : Expressed Sequence Tags / chemistry; Gene Library; Genetic Vectors; Sequence Analysis, DNA; Subtraction Technique; Triticum / genetics
TL;DR: The enrichment methods were effective in reducing the most abundant unigenes and to the observation that the most diverse libraries were from tissues exposed to environmental stresses including heat, drought, salinity, or low temperature. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Conformational changes in Sindbis virions resulting from exposure to low pH and interactions with cells suggest that cell penetration may occur at the cell surface in the absence of membrane fusion

Virology, 324(2), 373–386.

By: A. Paredes, D. Ferreira, M. Horton, A. Saad, H. Tsuruta, R. Johnston, W. Klimstra, K. Ryman ...

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Comparison of results for serologic testing and a polymerase chain reaction assay to determine the prevalence of stray dogs in eastern Tennessee seropositive to Ehrlichia canis

American Journal of Veterinary Research, 65(9), 1200–1203.

By: R. Seaman n, S. Kania n, B. Hegarty n, A. Legendre n & E. Breitschwerdt n

MeSH headings : Animals; Dog Diseases / epidemiology; Dog Diseases / microbiology; Dogs; Ehrlichia canis; Ehrlichiosis / epidemiology; Ehrlichiosis / veterinary; Enzyme-Linked Immunosorbent Assay / methods; Enzyme-Linked Immunosorbent Assay / veterinary; Fluorescent Antibody Technique, Indirect / methods; Fluorescent Antibody Technique, Indirect / veterinary; Polymerase Chain Reaction / methods; Polymerase Chain Reaction / veterinary; Seroepidemiologic Studies; Serologic Tests / veterinary; Tennessee / epidemiology
TL;DR: The discordant ELISA, IFA, and PCR results obtained in this study were unexpected and may have been related to exposure of dogs to an Ehrlichia species other than E. canis, such as E. ewingii. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018

2004 journal article

Characterization of self-assembled monolayers of porphyrins bearing multiple thiol-derivatized rigid-rod tethers

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 126(38), 11944–11953.

By: A. Yasseri n, D. Syomin n, V. Malinovskii n, R. Loewe n, J. Lindsey n, F. Zaera n, D. Bocian n

TL;DR: The general similarities in the electron-transfer characteristics for all of the ZnPS(n) SAMs are attributed to the similar binding motif. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 journal article

Assessment of CD4+ and CD8+ IFN-gamma producing cells by ELISPOT in naive and FIV-infected cats

VETERINARY IMMUNOLOGY AND IMMUNOPATHOLOGY, 102(1-2), 77–84.

By: J. Sirriyah, G. Dean*, A. LaVoy* & M. Burkhard*

author keywords: feline immunodeficiency virus; ELISPOT; CD4+; CD8+; T-cell subsets
MeSH headings : Animals; CD4-Positive T-Lymphocytes / immunology; CD8-Positive T-Lymphocytes / immunology; Cats; Concanavalin A / immunology; Feline Acquired Immunodeficiency Syndrome / blood; Feline Acquired Immunodeficiency Syndrome / immunology; Immunodeficiency Virus, Feline / immunology; Immunoenzyme Techniques / veterinary; Interferon-gamma / biosynthesis; Interferon-gamma / immunology; Lymphocyte Activation / immunology; Lymphocyte Count / veterinary
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

An interactive network of zinc-finger proteins contributes to regionalization of the Drosophila embryo and establishes the domains of HOM-C protein function

DEVELOPMENT, 131(12), 2781–2789.

By: L. Robertson n, D. Bowling n, J. Mahaffey n, B. Imiolczyk n & J. Mahaffey n

author keywords: Hex; homeotic; zinc finger; Drosophila; segment identity; pattern formation
MeSH headings : Animals; Body Patterning / physiology; DNA-Binding Proteins / genetics; Drosophila Proteins / genetics; Drosophila melanogaster / embryology; Embryo, Nonmammalian / physiology; Gene Expression Regulation, Developmental / genetics; Homeodomain Proteins / genetics; Morphogenesis / physiology; Repressor Proteins / genetics; Transcription Factors / genetics; Zinc Fingers / physiology
TL;DR: It is concluded that a combination of regionalizing factors, in concert with the HOM-C proteins, promotes the specification of individual segment identity. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness

JOURNAL OF HEREDITY, 95(4), 284–290.

By: E. Pasyukova n, S. Nuzhdin, T. Morozova & T. Mackay

MeSH headings : Analysis of Variance; Animals; Competitive Behavior / physiology; DNA Transposable Elements / genetics; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Genome; In Situ Hybridization; Reproduction / genetics; Reproduction / physiology; Selection, Genetic; Species Specificity; Translocation, Genetic / genetics
TL;DR: Both homozygous and heterozygous TE insertions were shown to have deleterious effects on fitness and its components, and higher rates of ectopic exchanges and chromosomal rearrangements resulting in early embryonic death are predicted from an increase in TE copy number. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 book

A primer of genome science (2nd ed.)

Sunderland, MA: Sinauer Associates.

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Sp2 DNA binding activity and trans-activation are negatively regulated in mammalian cells

JOURNAL OF BIOLOGICAL CHEMISTRY, 279(14), 13911–13924.

MeSH headings : Animals; Base Sequence; COS Cells; Consensus Sequence; Cricetinae; DNA-Binding Proteins / chemistry; DNA-Binding Proteins / genetics; DNA-Binding Proteins / metabolism; Epithelial Cells / cytology; Epithelial Cells / physiology; Humans; Male; Mammals; Mice; Promoter Regions, Genetic / physiology; Prostate / cytology; Prostate-Specific Antigen / genetics; Protein Structure, Tertiary; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Sp1 Transcription Factor / chemistry; Sp1 Transcription Factor / genetics; Sp1 Transcription Factor / metabolism; Sp2 Transcription Factor; Sp3 Transcription Factor; Tetrahydrofolate Dehydrogenase / genetics; Transcription Factors / chemistry; Transcription Factors / genetics; Transcription Factors / metabolism; Transcription, Genetic / physiology
TL;DR: Sp2 is functionally distinct relative to other Sp family members and suggest that Sp2 may play a unique role in cell physiology, using chimeric molecules prepared with portions of Sp1 and Sp2 and the human prostate-specific antigen promoter. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

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