Works Published in 2005

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Displaying works 101 - 120 of 179 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2005 journal article

Solving the protein sequence metric problem

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6395–6400.

By: W. Atchley n, J. Zhao n, A. Fernandes n & T. Druke n

author keywords: basic helix-loop-helix; molecular evolution; multivariate statistics; amino acid attributes; factor analysis
MeSH headings : Amino Acid Sequence / genetics; Analysis of Variance; Cluster Analysis; Codon / genetics; Computational Biology / methods; Discriminant Analysis; Genetic Variation; Models, Genetic; Multivariate Analysis; Phylogeny; Protein Conformation; Static Electricity; Statistics as Topic / methods
TL;DR: Multivariate statistical analyses on almost 500 amino acid attributes are used to produce a small set of highly interpretable numeric patterns of amino acid variability that reflect polarity, secondary structure, molecular volume, codon diversity, and electrostatic charge. (via Semantic Scholar)
UN Sustainable Development Goal Categories
10. Reduced Inequalities (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6401–6406.

author keywords: Myc; predictive motif; transcription factor; oncoprotein; molecular evolution
MeSH headings : Amino Acid Sequence / genetics; Basic-Leucine Zipper Transcription Factors; Computational Biology / methods; DNA-Binding Proteins / genetics; Fuzzy Logic; Genetic Variation; Genomics / methods; Helix-Loop-Helix Motifs / genetics; Molecular Sequence Data; Protein Conformation; Proto-Oncogene Proteins c-myc / genetics; Repressor Proteins / genetics; Sequence Alignment; Sequence Homology; Transcription Factors / genetics
TL;DR: A small set of amino acid sites from the N-terminal portion of the basic helix-loop-helix (bHLH) domain are described that provide very accurate sequence signatures for the Myc-Max-Mad transcription factor network and three of its member proteins. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Predicted genetic gains and testing efficiency from two loblolly pine clonal trials

CANADIAN JOURNAL OF FOREST RESEARCH, 35(7), 1754–1766.

By: F. Isik*, B. Goldfarb*, A. LeBude*, B. Li* & S. McKeand*

TL;DR: The results contribute to estimates of the gains available from clonal forestry and will help guide clonal testing and selection programs, as there were numerous clones with high apparent resistance. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2005 journal article

Pre-existing immunity to pathogenic Listeria monocytogenes does not prevent induction of immune responses to feline immunodeficiency virus by a novel recombinant Listeria monocytogenes vaccine

VACCINE, 23(12), 1479–1490.

By: R. Stevens n, A. LaVoy n, S. Nordone n, M. Burkhard* & G. Dean n

author keywords: Listeria monocytogenes; feline immunodeficiency virus; HIV
MeSH headings : Animals; Antibodies, Viral / analysis; Antigens, Viral / genetics; Antigens, Viral / immunology; Cats; Disease Models, Animal; Feces; Feline Acquired Immunodeficiency Syndrome / immunology; Feline Acquired Immunodeficiency Syndrome / prevention & control; Female; Gene Products, env / genetics; Gene Products, env / immunology; Gene Products, gag / genetics; Gene Products, gag / immunology; Immunodeficiency Virus, Feline / genetics; Immunodeficiency Virus, Feline / immunology; Immunoglobulin A / analysis; Listeria monocytogenes / genetics; Listeria monocytogenes / immunology; Saliva / immunology; Vaccines, Synthetic / administration & dosage; Vaccines, Synthetic / immunology; Vagina / immunology; Viral Proteins / genetics; Viral Proteins / immunology; Viral Vaccines / administration & dosage; Viral Vaccines / immunology
TL;DR: Using a simplified approach to introduce individual and polyprotein FIV gag genes, it is shown that recombinant L. monocytogenes containing the entire gag expresses the full-length Gag polyprotein in a soluble secreted form. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

PowerMarker: an integrated analysis environment for genetic marker analysis

BIOINFORMATICS, 21(9), 2128–2129.

By: K. Liu n & S. Muse n

MeSH headings : Algorithms; Computer Graphics; DNA Mutational Analysis / methods; Gene Frequency; Genetic Markers / genetics; Genetics, Population / methods; Linkage Disequilibrium / genetics; Oligonucleotide Array Sequence Analysis / methods; Polymorphism, Single Nucleotide / genetics; Software; User-Computer Interface
TL;DR: PowerMarker delivers a data-driven, integrated analysis environment (IAE) for genetic data that accelerates the analysis lifecycle and enables users to maintain data integrity throughout the process. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 personal communication

Potential limitations of the 16S-23S rRNA intergenic region for molecular detection of Bartonella species - Authors' reply

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins

Plant Physiology, 137(2), 762–778.

By: N. Houston n, C. Fan n, Q. Xiang n, J. Schulze n, R. Jung n & R. Boston n

MeSH headings : Base Sequence; Evolution, Molecular; Gene Expression Regulation; Molecular Sequence Data; Multigene Family; Oxidative Stress; Phylogeny; Plants / enzymology; Plants / genetics; Protein Disulfide-Isomerases / genetics; Sequence Homology, Nucleic Acid; Thioredoxins / genetics
TL;DR: A genome-wide search of Arabidopsis genes was carried out to identify plant PDI-like proteins, and a set of 22 PDIL proteins were identified that constitute a well-supported clade containing orthologs of known PDIs. (via Semantic Scholar)
Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

PhotochemCAD 2: A Refined Program with Accompanying Spectral Databases for Photochemical Calculations

PHOTOCHEMISTRY AND PHOTOBIOLOGY, 81(1), 212–213.

By: J. Dixon*, M. Taniguchi* & J. Lindsey*

TL;DR: The PhotochemCAD program has been revised extensively and the user interface has been streamlined to facilitate visual display, operation of the various modules, input of user data via a wizard and output of spectra and calculations. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2005 journal article

Modeling quantitative trait loci and interpretation of models

GENETICS, 169(3), 1711–1725.

MeSH headings : Gene Frequency; Linkage Disequilibrium; Models, Genetic; Models, Statistical; Quantitative Trait Loci; Regression Analysis
TL;DR: A quantitative genetic model relates the genotypic value of an individual to the alleles at the loci that contribute to the variation in a population in terms of additive, dominance, and epistatic effects and proposes a number of models to describe this relationship. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Model systems in agriculture: Lessons from worms

Annals of Applied Biology, 146(2), 147–154.

By: D. Bird n

Contributors: D. Bird n

TL;DR: Genomic tools are expanding the utility of organisms originally developed as models for biomedical research as a means to address complex agricultural problems, and agricultural pests are serving as models to help unravel questions of basic biology. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2005 journal article

Investigating hookworm genomes by comparative analysis of two Ancylostoma species

BMC Genomics, 6.

By: M. Mitreva, J. McCarter, P. Arasu, J. Hawdon, J. Martin, M. Dante, T. Wylie, J. Xu ...

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

In vivo processing and isolation of furin protease-sensitive alphavirus glycoproteins: a new technique for producing mutations in virus assembly

VIROLOGY, 332(2), 629–639.

By: S. Nelson n, R. Hernandez n, D. Ferreira n & D. Brown n

author keywords: alphavirus; Sindbis; membrane glycoproteins; form protease; virus assembly
MeSH headings : Animals; Capsid Proteins / genetics; Cell Line; Cricetinae; Dithiothreitol / pharmacology; Ethylmaleimide / pharmacology; Furin / pharmacology; Kidney; Mutagenesis, Site-Directed; Mutagens; Sindbis Virus / drug effects; Sindbis Virus / genetics; Sindbis Virus / isolation & purification; Viral Envelope Proteins / genetics; Viral Structural Proteins / genetics
TL;DR: In a new approach to the production of membrane-free membrane glycoproteins, furin protease recognition motifs were installed at various positions in the E1 glycoprotein ectodomain to provide a unique method for studying the mechanism of virus assembly and protein structure without altering crucial early events in protein assembly, folding, and maturation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Geographic distribution of babesiosis among dogs in the United States and association with dog bites: 150 cases (2000-2003)

Journal of the American Veterinary Medical Association, 227(6), 942–947.

By: A. Birkenheuer n, M. Correa, M. Levy* & E. Breitschwerdt*

MeSH headings : Animals; Babesia / classification; Babesia / isolation & purification; Babesiosis / epidemiology; Babesiosis / transmission; Babesiosis / veterinary; Bites and Stings / complications; Bites and Stings / veterinary; Breeding; DNA, Protozoan / analysis; Dog Diseases / epidemiology; Dog Diseases / transmission; Dogs; Geography; Polymerase Chain Reaction / methods; Polymerase Chain Reaction / veterinary; Retrospective Studies; United States / epidemiology
TL;DR: Testing for babesiosis should be pursued in dogs with clinicopathologic abnormalities consistent with immune-mediated hemolytic anemia or thrombocytopenia, particularly if there is a history of a recent dog bite. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018

2005 journal article

Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid

GENETICS, 169(4), 2295–2303.

MeSH headings : Cell Differentiation; Chimera; Chromosome Mapping; Crosses, Genetic; Eucalyptus / genetics; Gene Expression Regulation; Genes, Plant; Genetic Linkage; Genetic Markers; Genetic Variation; Genome, Plant; Genotype; Nucleic Acid Hybridization; Oligonucleotide Array Sequence Analysis; Phylogeny; Quantitative Trait Loci; RNA, Messenger / metabolism
TL;DR: To analyze and compare the genetic architecture of transcript regulation in different genetic backgrounds of Eucalyptus, microarrays were used to examine variation in mRNA abundance in the differentiating xylem of a E. grandis pseudobackcross population. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Differences in wood density and growth of fertilized and nonfertilized loblolly pine associated with a mutant gene, cad-n1

CANADIAN JOURNAL OF FOREST RESEARCH, 35(7), 1723–1730.

By: Q. Yu*, S. McKeand*, C. Nelson, B. Li, . Sherrill & T. Mullin*

TL;DR: A rare mutant allele (cad-n1) of the cad gene in loblolly pine causes a deficiency in the production of cinnamyl alcohol dehydrogenase (CAD). (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2005 journal article

Comparison of standard exponential and linear techniques to amplify small cDNA samples for microarrays

BMC Genomics, 6(61).

By: J. Wadenback, D. Clapham, D. Craig, R. Sederoff, G. Peter, S. Von Arnold, U. Egertsdotter

Source: NC State University Libraries
Added: August 6, 2018

2005 journal article

Cloning and expression of feline interleukin 15

CYTOKINE, 29(2), 77–83.

By: G. Dean n, A. Barger n & A. LaVoy n

author keywords: feline; feline immunodeficiency virus; interleukin 15
MeSH headings : Animals; Antibodies / immunology; Base Sequence; Blotting, Western; Cats; Cell Line; Cloning, Molecular; Cross Reactions; DNA Primers; DNA, Complementary; Humans; Immunohistochemistry; Interleukin-15 / genetics; Interleukin-15 / immunology; Plasmids; T-Lymphocytes / immunology
TL;DR: A cDNA encoding feline interleukin 15 (IL15) was cloned from the lymph node of a cat infected with feline infectious peritonitis virus and was shown to sustain primary feline lymphocytes, a feline T cell line, and mouse CTLL-2 cells. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Cell wall localization of Red clover necrotic mosaic virus movement protein is required for cell-to-cell movement

VIROLOGY, 333(1), 10–21.

author keywords: RCNMV movement protein; plasmodesmata; GFP; intracellular localization; viral movement; confocal microscopy
MeSH headings : Amino Acid Sequence; Cell Wall / physiology; Cell Wall / virology; Mosaic Viruses / genetics; Mosaic Viruses / physiology; Mutation; Plant Diseases / virology; Plant Viral Movement Proteins; Plants, Genetically Modified; Protein Transport; RNA, Viral; Recombinant Fusion Proteins / metabolism; Tobacco / ultrastructure; Tobacco / virology; Viral Proteins / metabolism; Viral Proteins / physiology
TL;DR: The data suggest the presence of distinct domains in the MP for virus movement, complementarity, and intracellular localization and support a model of MP interacting cooperatively with itself to bind viral RNA, localize to and modify plasmodesmata and effect virus movement. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Bartonella species as a potential cause of epistaxis in dogs

JOURNAL OF CLINICAL MICROBIOLOGY, 43(5), 2529–2533.

By: E. Breitschwerdt n, B. Hegarty n, R. Maggi n, E. Hawkins n & P. Dyer*

MeSH headings : Animals; Bartonella Infections / diagnosis; Bartonella Infections / veterinary; Base Sequence; DNA Primers; DNA, Bacterial / genetics; DNA, Bacterial / isolation & purification; Dog Diseases / microbiology; Dogs; Epistaxis / etiology; Epistaxis / microbiology; Epistaxis / veterinary; Female; Male
TL;DR: These cases, in conjunction with previously published reports, support a potential role for Bartonella spp. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2005 journal article

Autochthonous visceral leishmaniasis in dogs in North America

Journal of the American Veterinary Medical Association, 226(8), 1316–1322.

By: P. Schantz*, F. Steurer, Z. Duprey, K. Kurpel, S. Barr, J. Jackson, E. Breitschwerdt*, M. Levy*, J. Fox

MeSH headings : Animals; Disease Outbreaks / veterinary; Disease Reservoirs / veterinary; Disease Transmission, Infectious / veterinary; Dog Diseases / diagnosis; Dog Diseases / epidemiology; Dog Diseases / transmission; Dogs; Fluorescent Antibody Technique, Indirect / veterinary; Humans; Leishmaniasis, Visceral / diagnosis; Leishmaniasis, Visceral / epidemiology; Leishmaniasis, Visceral / transmission; Leishmaniasis, Visceral / veterinary; North America / epidemiology; Polymerase Chain Reaction / veterinary
UN Sustainable Development Goal Categories
Sources: Web Of Science, NC State University Libraries, Crossref
Added: August 6, 2018

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