Genomic Sciences

Works Published in 2012

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Displaying works 101 - 112 of 112 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2012 journal article

Interactions of Fr genes and mixed-pathogen inocula in the loblolly pine-fusiform rust pathosystem

TREE GENETICS & GENOMES, 8(1), 15–25.

By: F. Isik n , H. Amerson n, R. Whetten n , S. Garcia n & S. McKeand n 

author keywords: Pinus taeda; Disease resistance; Gene-for-gene resistance; Tree improvement; Virulence assessment
TL;DR: Open-pollinated loblolly pine seedlings derived from seven maternal parents were inoculated in a greenhouse with 10 different bulked inocula of the fusiform rust fungus and assessed for disease incidence, revealing wide ranges of pathogen virulence levels against the different R alleles. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2012 journal article

Genetic Evidence for an Indispensable Role of Somatic Embryogenesis Receptor Kinases in Brassinosteroid Signaling

PLOS GENETICS, 8(1).

By: X. Gou *, H. Yin *, K. He *, J. Du *, J. Yi *, S. Xu *, H. Lin *, S. Clouse n, J. Li *

MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Brassinosteroids / metabolism; Gene Expression Regulation, Plant / genetics; Mutation / genetics; Phenotype; Phosphorylation; Plant Growth Regulators; Plant Proteins / genetics; Protein Kinases / genetics; Protein Kinases / metabolism; Protein Serine-Threonine Kinases / genetics; Signal Transduction
TL;DR: Genetic and biochemical evidence is provided to demonstrate that SERKs are absolutely required for early steps in BR signaling and that the BR signaling pathway has been completely abolished in the triple mutant of serk1 bak1 bkk1 triple mutant. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2012 journal article

An ER-targeted calcium-binding peptide confers salt and drought tolerance mediated by CIPK6 in Arabidopsis

PLANTA, 235(3), 539–552.

By: P. Tsou*, S. Lee n, N. Allen n, H. Winter-Sederoff & D. Robertson n

author keywords: ER calcium; Calcium-binding peptide (CBP); CBL-interacting protein kinase (CIPK6); Drought; Salt
MeSH headings : Arabidopsis / drug effects; Arabidopsis / genetics; Arabidopsis / metabolism; Calcium / metabolism; Chlorophyll / metabolism; Droughts; Endoplasmic Reticulum / metabolism; Gene Expression Regulation, Plant; Immunoblotting; Peptides / genetics; Peptides / metabolism; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Roots / drug effects; Plant Roots / genetics; Plant Roots / metabolism; Plants, Genetically Modified / drug effects; Plants, Genetically Modified / genetics; Plants, Genetically Modified / metabolism; Potassium / metabolism; Reverse Transcriptase Polymerase Chain Reaction; Salts / pharmacology; Sodium / metabolism
TL;DR: This work demonstrates that ER (or nuclear) Ca2+ can directly participate in signal transduction to alter gene expression and the discovery of a method for increasing Ca 2+ levels without deleterious effects on plant growth may have practical applications. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Experimental infection by capillary tube feeding of Rhipicephalus sanguineus with Bartonella vinsonii subspecies berkhoffii

Comparative Immunology, Microbiology and Infectious Diseases, 35(1), 9–15.

By: S. Billeter *, R. Kasten*, L. Killmaster*, E. Breitschwerdt n , M. Levin *, M. Levy n, M. Kosoy*, B. Chomel*

author keywords: Bartonella vinsonii subspecies berkhoffii; Rhipicephalus sanguineus; Artificial infection; Transmission
MeSH headings : Animals; Arachnid Vectors / microbiology; Bacterial Typing Techniques; Bartonella / genetics; Bartonella / physiology; Bartonella Infections / microbiology; Bartonella Infections / transmission; Bartonella Infections / veterinary; DNA, Bacterial / genetics; Dog Diseases / microbiology; Dog Diseases / transmission; Dogs; Feces / microbiology; Female; Polymerase Chain Reaction; Rabbits; Rhipicephalus sanguineus / microbiology
TL;DR: To determine whether adult R. sanguineus ticks can be infected with a B. v. berkhoffii genotype II isolate via capillary tube feeding and whether the infection can then be transmitted from adult females to their eggs via trans-ovarial transmission, tick fecal material was collected and screened as a possible source of infectious inoculum for canine infections. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2012 journal article

Association genetics of the loblolly pine (Pinus taeda, Pinaceae) metabolome

NEW PHYTOLOGIST, 193(4), 890–902.

By: A. Eckert *, J. Wegrzyn *, W. Cumbie n, B. Goldfarb n, D. Huber *, V. Tolstikov *, O. Fiehn *, D. Neale *

author keywords: association genetics; forest trees; loblolly pine (Pinus taeda); metabolome; natural selection; single nucleotide polymorphisms (SNPs)
MeSH headings : Bayes Theorem; Gene Frequency; Genetic Association Studies; Genetics, Population; Metabolome; Models, Genetic; Pinus taeda / genetics; Pinus taeda / metabolism; Polymorphism, Single Nucleotide; Southeastern United States
TL;DR: Standard association genetic methods are used to correlate 3563 single nucleotide polymorphisms (SNPs) to concentrations of 292 metabolites measured in a single loblolly pine (Pinus taeda) association population, highlighting the importance of multi-SNP models to association mapping and the implications for association mapping in forest trees. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Deactivation of the Arabidopsis BRASSINOSTEROID INSENSITIVE 1 (BRI1) receptor kinase by autophosphorylation within the glycine-rich loop

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 109(1), 327–332.

By: M. Oh *, X. Wang n, S. Clouse n & S. Huber*

author keywords: phosphotyrosine; signal transduction; phosphoserine; modification-specific antibodies
MeSH headings : Amino Acid Substitution / genetics; Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Brassinosteroids; Enzyme Activation; Glycine / metabolism; Phosphorylation; Phosphoserine / metabolism; Plants, Genetically Modified; Protein Kinases / chemistry; Protein Kinases / metabolism; Protein Structure, Secondary; Recombinant Fusion Proteins / metabolism; Signal Transduction; Structure-Activity Relationship
TL;DR: It is suggested that autophosphorylation of serine-891 is one of the deactivation mechanisms that inhibit BRI1 activity and BR signaling in vivo. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Stem sinuosity in loblolly pine with nitrogen and calcium additions

FOREST ECOLOGY AND MANAGEMENT, 265, 55–61.

By: J. Espinoza n, H. Allen n , S. McKeand n  & P. Dougherty*

author keywords: Stem sinuosity; Fertilization; Ca; N; Loblolly pine
TL;DR: The findings infer that the appropriate nutrient balance and selection of genetic material are important to provide good growth and acceptable stem form when managing stands of loblolly pine. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
14. Life Below Water (OpenAlex)
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2012 journal article

Locally Invertible Multidimensional Convolutional Encoders

IEEE TRANSACTIONS ON INFORMATION THEORY, 58(3), 1774–1782.

By: R. Lobo n, D. Bitzer n & M. Vouk n

author keywords: Convolutional codes; error correction codes; multidimensional systems
TL;DR: A novel method of encoding and inverting multidimensional sequences using the subsequence map, and it is shown that the overlapping symbols between consecutive input subsequences obtained during the sequence inversion can be used to determine if the received sequence is the same as the transmitted codeword. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Genetic Architecture of Maize Kernel Composition in the Nested Association Mapping and Inbred Association Panels

PLANT PHYSIOLOGY, 158(2), 824–834.

By: J. Cook  n, M. McMullen n, J. Holland n , F. Tian  n, P. Bradbury  n, J. Ross-Ibarra  n, E. Buckler n, S. Flint-Garcia n

MeSH headings : Genes, Plant; Genetic Linkage; Genome-Wide Association Study; Quantitative Trait Loci; Zea mays / genetics
TL;DR: Joint-linkage quantitative trait locus mapping and genome-wide association studies for kernel starch, protein, and oil in the maize nested association mapping population, composed of 25 recombinant inbred line families derived from diverse inbred lines, revealed that the genetic architecture of kernel composition traits is controlled by 21–26 quantitative traits loci. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Development of CAPS and dCAPS markers for CYP82E4, CYP82E5v2 and CYP82E10 gene mutants reducing nicotine to nornicotine conversion in tobacco

MOLECULAR BREEDING, 29(3), 589–599.

By: D. Li *, R. Lewis n, A. Jack*, R. Dewey n, S. Bowen n & R. Miller*

author keywords: CAPS markers; dCAPS markers; Nicotiana tabacum; Nicotine conversion; Tobacco harm reduction; Mutation breeding
TL;DR: Efficient, user-friendly DNA markers to identify mutations based on single nucleotide polymorphisms (SNPs) can be used in marker-assisted selection programs to quickly introgress the desired mutations into commercial varieties in order to reduce nornicotine levels in tobacco leaves. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2012 journal article

Conformational Changes in Sindbis Virus Induced by Decreased pH Are Revealed by Small-Angle Neutron Scattering

JOURNAL OF VIROLOGY, 86(4), 1982–1987.

By: L. He *, A. Piper n, F. Meilleur n , R. Hernandez n, W. Heller * & D. Brown n

MeSH headings : Hydrogen-Ion Concentration; RNA, Viral / chemistry; RNA, Viral / genetics; RNA, Viral / metabolism; Scattering, Small Angle; Sindbis Virus / chemistry; Sindbis Virus / genetics; Sindbis Virus / metabolism; Viral Proteins / chemistry; Viral Proteins / genetics; Virion / chemistry; Virion / genetics; Virion / metabolism
TL;DR: Small-angle neutron scattering with contrast variation is employed to probe how the structure of a mammalian-grown Sindbis virus responds to moderately acidic pH and improves the understanding of the pH-driven alteration of Sind Bis virus structure. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2012 journal article

A Single-Amino-Acid Polymorphism in Reovirus Protein mu 2 Determines Repression of Interferon Signaling and Modulates Myocarditis

JOURNAL OF VIROLOGY, 86(4), 2302–2311.

By: S. Irvin n, J. Zurney n, L. Ooms*, J. Chappell *, T. Dermody * & B. Sherry n

MeSH headings : Animals; Cell Line; Cells, Cultured; Down-Regulation; Humans; Interferon-alpha / genetics; Interferon-alpha / metabolism; Interferon-beta / genetics; Interferon-beta / metabolism; Mammalian orthoreovirus 3 / genetics; Mammalian orthoreovirus 3 / metabolism; Mice; Myocarditis / genetics; Myocarditis / metabolism; Myocarditis / virology; Myocytes, Cardiac / metabolism; Myocytes, Cardiac / virology; Orthoreovirus, Mammalian / genetics; Orthoreovirus, Mammalian / metabolism; Polymorphism, Single Nucleotide; Reoviridae Infections / genetics; Reoviridae Infections / metabolism; Reoviridae Infections / virology; Signal Transduction; Viral Proteins / genetics
TL;DR: It is demonstrated that a single amino acid difference between viruses can dictate virus strain-specific differences in suppression of the host IFN-β response and, consequently, damage to the heart. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

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