Statistical Genetics & Bioinformatics

Works Published in 2008

search works

Displaying all 4 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2008 journal article

Basing population genetic inferences and models of molecular evolution upon desired stationary distributions of DNA or protein sequences

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES, 363(1512), 3931–3939.

By: S. Choi n, B. Redelings n & J. Thorne n

author keywords: variable-length Markov model; profile hidden Markov model; insertion-deletion model; scaled selection coefficient; fitness; Pfam
MeSH headings : Computer Simulation; DNA / genetics; Evolution, Molecular; Genetics, Population; INDEL Mutation / genetics; Markov Chains; Models, Genetic; Population Density; Proteins / genetics; Selection, Genetic
TL;DR: This work explores how to construct time-reversible evolutionary models that yield stationary distributions of sequences that match given target distributions, and introduces an insertion–deletion model that describes selectively neutral evolutionary changes to DNA. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Rates of nucleotide substitution in Cornaceae (Cornales)-Pattern of variation and underlying causal factors

MOLECULAR PHYLOGENETICS AND EVOLUTION, 49(1), 327–342.

By: Q. Xiang n , J. Thorne n, T. Seo n, W. Zhang n, D. Thomas n & R. Ricklefs *

author keywords: Comus; Cornaceae; Divergence time; Rate of molecular evolution; Rate of morphological evolution; Speciation
MeSH headings : Bayes Theorem; Chloroplasts / genetics; Cornus / anatomy & histology; Cornus / classification; Cornus / genetics; DNA, Chloroplast / genetics; DNA, Plant / genetics; Evolution, Molecular; Fossils; Genes, Plant; Genetic Speciation; Genome, Chloroplast; Models, Genetic; Nucleotides / genetics; Phylogeny; Sequence Analysis, DNA
TL;DR: This study examined the rate and pattern of molecular evolution for five DNA regions over a phylogeny of Cornus, the single genus of Cornaceae, and suggested a possible localized link between species richness and rate of nonsynonymous nucleotide substitution for the combined cpDNA regions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Binary encoding of multiplexed images in mixed noise

IEEE TRANSACTIONS ON MEDICAL IMAGING, 27(9), 1323–1332.

By: D. Lalush n

author keywords: binary coding; Hadamard spectroscopy; mixed noise; multiplexing
MeSH headings : Algorithms; Animals; Information Storage and Retrieval / methods; Mice; Radiographic Image Enhancement / methods; Radiographic Image Interpretation, Computer-Assisted / methods; Signal Processing, Computer-Assisted
TL;DR: The model developed provides a simple framework for analysis, discovery, and optimization of binary coding patterns used in multiplexed imaging systems and predicts trends and rank order of performance in regions of nonuniform images and in a simple tomosynthesis reconstruction. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2008 journal article

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

BMC GENOMICS, 9.

By: S. Bischoff n, S. Tsai n, N. Hardison n, A. York n, B. Freking *, D. Nonneman*, G. Rohrer *, J. Piedrahita n

MeSH headings : Animals; Base Sequence; Computational Biology; DNA / genetics; Female; Fetus / metabolism; Gene Expression Profiling; INDEL Mutation; Linear Models; Male; Oligonucleotide Array Sequence Analysis / methods; Oligonucleotide Array Sequence Analysis / statistics & numerical data; Placenta / metabolism; Polymorphism, Single Nucleotide; Pregnancy; RNA / genetics; Species Specificity; Swine / genetics
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.