Environmental Health Science - 2012

Böhm, S., Cowley, M., Oakey, R. J., Schulz, R., & Wood, A. J. (2012). Epigenetic control of alternative mRNA processing at the imprinted Herc3/Nap1l5 locus. 40(18), 8917–8926. https://doi.org/10.1093/nar/gks654

Hsieh, E. J., Bereman, M. S., Durand, S., Valaskovic, G. A., & MacCoss, M. J. (2012). Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples. Journal of The American Society for Mass Spectrometry, 24(1), 148–153. https://doi.org/10.1007/S13361-012-0508-6

Cowley, M., & Oakey, R. J. (2012). Resetting for the Next Generation. Molecular Cell, 48(6), 819–821. https://doi.org/10.1016/j.molcel.2012.12.007

Proudhon, C., Duffié, R., Ajjan, S., Cowley, M., Iranzo, J., Carbajosa, G., … Bourc’his, D. (2012). Protection against De Novo Methylation Is Instrumental in Maintaining Parent-of-Origin Methylation Inherited from the Gametes. Molecular Cell, 47(6), 909–920. https://doi.org/10.1016/j.molcel.2012.07.010

Thomas, J.-A., Antonelli, J. A., Bañez, L. L., Gerber, L., Hoyo, C., Grant, D., … Freedland, S. J. (2012). 341 ANDROGENETIC ALOPECIA AT VARIOUS AGES AND PROSTATE CANCER RISK IN AN EQUAL ACCESS MULTIETHNIC CASE CONTROL SERIES OF VETERANS. Journal of Urology, 187(4S). https://doi.org/10.1016/j.juro.2012.02.402

Perkins, E., Murphy, S. K., Murtha, A. P., Schildkraut, J., Jirtle, R. L., Demark-Wahnefried, W., … Hoyo, C. (2012). Insulin-Like Growth Factor 2/H19 Methylation at Birth and Risk of Overweight and Obesity in Children. The Journal of Pediatrics, 161(1), 31–39. https://doi.org/10.1016/j.jpeds.2012.01.015

Murphy, S. K., Adigun, A., Huang, Z., Overcash, F., Wang, F., Jirtle, R. L., … Hoyo, C. (2012). Gender-specific methylation differences in relation to prenatal exposure to cigarette smoke. Gene, 494(1), 36–43. https://doi.org/10.1016/j.gene.2011.11.062

Keku, T. O., Vidal, A., Oliver, S., Hoyo, C., Hall, I. J., Omofoye, O., … Millikan, R. (2012). Genetic variants in IGF-I, IGF-II, IGFBP-3, and adiponectin genes and colon cancer risk in African Americans and Whites. Cancer Causes & Control, 23(7), 1127–1138. https://doi.org/10.1007/S10552-012-9981-2

Hoyo, C., Fortner, K., Murtha, A. P., Schildkraut, J. M., Soubry, A., Demark-Wahnefried, W., … Murphy, S. K. (2012). Association of cord blood methylation fractions at imprinted insulin-like growth factor 2 (IGF2), plasma IGF2, and birth weight. Cancer Causes & Control, 23(4), 635–645. https://doi.org/10.1007/S10552-012-9932-Y

Schilling, B., Rardin, M. J., MacLean, B. X., Zawadzka, A. M., Frewen, B. E., Cusack, M. P., … Gibson, B. W. (2012). Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline. Molecular & Cellular Proteomics, 11(5), 202–214. https://doi.org/10.1074/mcp.M112.017707

Spivak, M., Bereman, M. S., MacCoss, M. J., & Noble, W. S. (2012). Learning Score Function Parameters for Improved Spectrum Identification in Tandem Mass Spectrometry Experiments. Journal of Proteome Research, 11(9), 4499–4508. https://doi.org/10.1021/pr300234m

Bereman, M. S., Canterbury, J. D., Egertson, J. D., Horner, J., Remes, P. M., Schwartz, J., … MacCoss, M. J. (2012). Evaluation of Front-End Higher Energy Collision-Induced Dissociation on a Benchtop Dual-Pressure Linear Ion Trap Mass Spectrometer for Shotgun Proteomics. Analytical Chemistry, 84(3), 1533–1539. https://doi.org/10.1021/ac203210a

Cilia, M., Bereman, M., Fish, T., MacCoss, M. J., & Gray, S. (2012). Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci. Journal of Integrative Agriculture, 11(2), 249–262. https://doi.org/10.1016/S2095-3119(12)60009-4

Egertson, J. D., Eng, J. K., Bereman, M. S., Hsieh, E. J., Merrihew, G. E., & MacCoss, M. J. (2012). De Novo Correction of Mass Measurement Error in Low Resolution Tandem MS Spectra for Shotgun Proteomics. Journal of The American Society for Mass Spectrometry, 23(12), 2075–2082. https://doi.org/10.1007/S13361-012-0482-Z

Bereman, M. S., Tomazela, D. M., Heins, H. S., Simonato, M., Cogo, P. E., Hamvas, A., … MacCoss, M. J. (2012). A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome. Analytical and Bioanalytical Chemistry, 403(8), 2397–2402. https://doi.org/10.1007/S00216-012-5953-3

Bereman, M. S., MacLean, B., Tomazela, D. M., Liebler, D. C., & MacCoss, M. J. (2012). The development of selected reaction monitoring methods for targeted proteomics via empirical refinement. PROTEOMICS, 12(8), 1134–1141. https://doi.org/10.1002/pmic.201200042