Microbiomes and Complex Microbial Communities

The biochemical mechanisms of plastic biodegradation

Gates, E., & Crook, N. (2024, November 2).

Community standards and future opportunities for synthetic communities in plant–microbiota research

Nature Microbiology.

The Carotenoids

Eroglu, A., Wang, G., Crook, N., & Bohn, T. (2024, November). ADVANCES IN NUTRITION, Vol. 15.

Seasonal effects of long-term warming on ecosystem function and bacterial diversity

PLOS ONE.

Metagenomic, metabolomic, and lipidomic shifts associated with fecal microbiota transplantation for recurrent <i>Clostridioides difficile</i> infection

McMillan, A. S., Zhang, G., Dougherty, M. K., McGill, S. K., Gulati, A. S., Baker, E. S., & Theriot, C. M. (2024, October 8). MSPHERE.

Data-Independent Acquisition Mass Spectrometry as a Tool for Metaproteomics: Interlaboratory Comparison Using a Model Microbiome

Rajczewski, A. T., Blakeley-Ruiz, J. A., Meyer, A., Vintila, S., McIlvin, M. R., Bossche, T. V. D., … Jagtap, P. D. (2024, September 22).

Bile acids impact the microbiota, host, and <i>C. difficile</i> dynamics providing insight into mechanisms of efficacy of FMTs and microbiota-focused therapeutics

[Review of ]. GUT MICROBES, 16(1).

A cell-free transcription-translation pipeline for recreating methylation patterns boosts DNA transformation in bacteria

MOLECULAR CELL, 84(14).

Enterococcal quorum-controlled protease alters phage infection

FEMS MICROBES, 5.

Meta-omics reveals role of photosynthesis in Microbially Induced Carbonate Precipitation at a CO2-rich Geyser

Violette, M., Hyland, E., Burgener, L., Ghosh, A., Montoya, B., & Kleiner, M. (2024, July 20).

Drought stress homogenizes maize growth responses to diverse natural soil microbiomes

Swift, J. F., Kolp, M. R., Carmichael, A., Ford, N. E., Hansen, P. M., Sikes, B. A., … Wagner, M. R. (2024, July 18). PLANT AND SOIL, Vol. 7.

Effective Seed Sterilization Methods Require Optimization Across Maize Genotypes

Parnell, J. J., Pal, G., Awan, A., Vintila, S., Houdinet, G., Hawkes, C. V., … Kleiner, M. (2024, July 17). PHYTOBIOMES JOURNAL, Vol. 7.

Pseudo-pac site sequences used by phage P22 in generalized transduction of <i>Salmonella</i>

PLOS PATHOGENS, 20(6).

Dietary protein from different sources escapes host digestion and is differentially modified by the microbiota

Awan, A., Bartlett, A., Blakeley-Ruiz, J. A., Richie, T., Theriot, C. M., & Kleiner, M. (2024, June 27).

Metabolically-versatile Ca. Thiodiazotropha symbionts of the deep-sea lucinid clam Lucinoma kazani have the genetic potential to fix nitrogen

ISME COMMUNICATIONS, 4(1).

The quantification of southern corn leaf blight disease using deep UV fluorescence spectroscopy and autoencoder anomaly detection techniques

PLOS ONE, 19(5).

High-quality draft genome sequence of <i>Paenibacillus</i> sp. RC80, a candidate for biofuel production

Rizzo, G., Choudoir, M., Simoes, R., Dayarathne, N., & Deangelis, K. M. (2024, June 7). (J. C. Thrash, Ed.). MICROBIOLOGY RESOURCE ANNOUNCEMENTS, Vol. 6.

Programming Probiotics: Diet-Responsive Gene Expression and Colonization Control in Engineered S. boulardii

ACS Synthetic Biology.

Implementation of in situ aerobic cometabolism for groundwater treatment: State of the knowledge and important factors for field operation

[Review of ]. SCIENCE OF THE TOTAL ENVIRONMENT, 925.

Offline Two-Dimensional Liquid Chromatography-Mass Spectrometry for Deep Annotation of the Fecal Metabolome Following Fecal Microbiota Transplantation

Anderson, B. G., Raskind, A., Hissong, R., Dougherty, M. K., McGill, S. K., Gulati, A. S., … Evans, C. R. (2024, May 16). JOURNAL OF PROTEOME RESEARCH.