Microbiomes and Complex Microbial Communities

Toluene-2-monooxygenase expression and trichloroethene oxidizing activity of Burkholderia vietnamiensis G4 grown on benzyl alcohol and benzyl esters

Evaluation of statistical approaches for differential metaproteomics: Reproducible code

Evaluation of statistical approaches for differential metaproteomics: Reproducible code

Evaluation of statistical approaches for differential metaproteomics

Hinzke, T., Kunath, B. J., Blakeley-Ruiz, J. A., Korenek, A., Vintila, S., Wilmes, P., & Kleiner, M. (2025, December 10). (Vol. 12). Vol. 12.

Draft genomes of six Streptomyces species from a United States biogeography survey

Microbiology Resource Announcements.

Techno-economic analysis of industrial-scale fermentation for formate dehydrogenase (FDH) production

Bioresources and Bioprocessing.

MassIVE MSV000100012 - Aerobic catabolism of isobutylene by Mycolicibacterium sp. ELW1 requires plasmid-borne ibc genes

Successful Fecal Microbiota Transplants in Post-antibiotic Treated Recurrent Clostridioides difficile Patients Induce Acylcarnitine and Sphingolipid Lipidomic Shifts

Assessing the diversity and functional profile of the microbial proteome in fermented foods

Structure-guided design of a synthetic bile acid that inhibits Clostridioides difficile TcdB toxin

Comparative performance of Scribe and database search engines in metaproteomic profiling of a ground-truth microbiome dataset

Development of Peptide Glucosyltransferase Inhibitors With Comprehensive Coverage Across <i>Clostridioides difficile</i> Toxin B Sub‐Types

Comparative Genomics of the Endosymbiont Cardinium Causing Reproductive Manipulation in Encarsia Parasitoid Wasps

MicrobiologyOpen.

Diverse bacteriohemerythrin genes of <i>Methylomonas denitrificans</i> FJG1 provide insight into the survival and activity of methanotrophs in low oxygen ecosystems

Weiblen, C., Kits, K. D., Kleiner, M., Sauvageau, D., & Stein, L. Y. (2025, September 25). (C. M. Cavanaugh, Ed.). MBIO, Vol. 9.

The emerging roles of non-Saccharomyces yeasts in fermented foods and human health

FEMS Yeast Research.

Assessing contamination in DNA extraction kits commonly used for microbiome research

Rabasco, J. T., Kisthardt, S. C., Theriot, C. M., & Callahan, B. J. (2025, September 23).

Dietary protein from different sources escapes host digestion and is differentially modified by gut microbiota

Food & Function.

The ecology, evolution, and physiology of Cardinium: a widespread heritable endosymbiont of invertebrates

[Review of ]. FEMS MICROBIOLOGY REVIEWS, 49.

Evaluation of Parallel Accumulation-Serial Fragmentation methods for metaproteomics using a model microbiome

Shreshta, R., Rajczewski, A. T., Do, K., Willets, M., Kleiner, M., Griffin, T. J., & Jagtap, P. D. (2025, August 15).

Root-secreted proteins: an underexplored component of root exudates

Trends in Plant Science.

Characterization of an isobutylene epoxide hydrolase (IbcK) from the isobutylene-catabolizing bacterium <i>Mycolicibacterium</i> sp. ELW1

Faulkner, N. W., Joyce, J. B., Smith, C., Swartz, P., Rose, R. B., Miller, E. S., & Hyman, M. R. (2025, August 26). (M. Vives, Ed.). APPLIED AND ENVIRONMENTAL MICROBIOLOGY, Vol. 8.

Inducible genome-wide mutagenesis for improvement of pDNA production by <i>E. coli</i>

MICROBIAL CELL FACTORIES, 24(1).

How thoughtful experimental design can empower biologists in the omics era

[Review of ]. NATURE COMMUNICATIONS, 16(1).

Differential modulation of post-antibiotic colonization resistance to <i>Clostridioides difficile</i> by two probiotic <i>Lactobacillus</i> strains

Foley, M. H., McMillan, A. S., O'Flaherty, S., Thanissery, R., Vanhoy, M. E., Fuller, M. G., … Theriot, C. M. (2025, July 21). (J. Ravel, Ed.). MBIO, Vol. 7.

<i>Clostridioides difficile</i> toxins alter host metabolic pathway and bile acid homeostasis gene expression in colonic epithelium

Thomas, S. A., Pike, C. M., Perkins, C. E., Brown, S. T., Jaen, X. M. E., McMillan, A. S., & Theriot, C. M. (2025, June 30). INFECTION AND IMMUNITY.