Microbiomes and Complex Microbial Communities

Works Published in 2018

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Displaying all 11 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2018 journal article

CRISPR tool puts RNA on the record

Nature, 562(7727), 347–349.

By: C. Beisel*

co-author countries: Germany 🇩🇪
MeSH headings : CRISPR-Cas Systems; Clustered Regularly Interspaced Short Palindromic Repeats; Gene Editing; RNA
Source: Crossref
Added: November 21, 2020

2018 chapter

Biodegradation of Ether Pollutants

In Consequences of Microbial Interactions with Hydrocarbons, Oils, and Lipids: Biodegradation and Bioremediation.

Michael Hyman

Source: ORCID
Added: April 28, 2020

2018 journal article

A detailed cell-free transcription-translation-based assay to decipher CRISPR protospacer-adjacent motifs

Methods, 143, 48–57.

By: C. Maxwell n, T. Jacobsen n, R. Marshall*, V. Noireaux* & C. Beisel n

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: Cas9; Cas12a; PAM; sgRNA; crRNA; TXTL
MeSH headings : Amino Acid Motifs; Biotechnology / methods; CRISPR-Associated Protein 9 / genetics; CRISPR-Associated Protein 9 / metabolism; CRISPR-Cas Systems / genetics; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; Computational Biology / methods; DNA / genetics; Escherichia coli; Gene Library; Green Fluorescent Proteins / chemistry; Green Fluorescent Proteins / metabolism; High-Throughput Nucleotide Sequencing / instrumentation; High-Throughput Nucleotide Sequencing / methods; Neisseria meningitidis; Plasmids / genetics; Protein Biosynthesis / genetics; RNA, Guide, Kinetoplastida / genetics; Sequence Analysis, DNA / instrumentation; Sequence Analysis, DNA / methods; Transcription, Genetic / genetics
Source: Crossref
Added: February 24, 2020

2018 journal article

Advances in CRISPR Technologies for Microbial Strain Engineering

Biotechnology Journal, 13(9), 1800460.

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
MeSH headings : Bacteria / genetics; CRISPR-Cas Systems; Fungi / genetics; Gene Editing / methods; Genetic Engineering / methods
Source: Crossref
Added: February 24, 2020

2018 journal article

Enrichment with Carbon-13 and Deuterium during Monooxygenase-Mediated Biodegradation of 1,4-Dioxane

Environmental Science & Technology Letters, 5(3), 148–153.

By: P. Bennett, M. Hyman n, C. Smith n, H. El Mugammar*, M. Chu, M. Nickelsen, R. Aravena*

co-author countries: Canada 🇨🇦 United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: January 31, 2019

2018 journal article

Concurrent Treatment of 1,4-Dioxane and Chlorinated Aliphatics in a Groundwater Recirculation System Via Aerobic Cometabolism

Groundwater Monitoring & Remediation, 38(3), 53–64.

By: M. Chu, P. Bennett, M. Dolan, M. Hyman*, A. Peacock, A. Bodour, R. Anderson, D. Mackay, M. Goltz

Sources: Web Of Science, ORCID
Added: January 31, 2019

2018 article

Synthetic Biology Approaches to Engineer Probiotics and Members of the Human Microbiota for Biomedical Applications

ANNUAL REVIEW OF BIOMEDICAL ENGINEERING, VOL 20, Vol. 20, pp. 277–300.

By: J. Bober*, C. Beisel n & N. Nair*

co-author countries: United States of America 🇺🇸
author keywords: probiotics; genetic tools; CRISPR; genome engineering; microbiome
MeSH headings : Animals; Bacteroides; CRISPR-Cas Systems; Gene Editing; Genetic Engineering; Genomics; Humans; Immune System; Lactic Acid / chemistry; Microbiota; Probiotics / chemistry; Probiotics / therapeutic use; Synthetic Biology / methods
Source: Web Of Science
Added: August 6, 2018

2018 journal article

Bacterial Adaptation to the Host's Diet Is a Key Evolutionary Force Shaping Drosophila-Lactobacillus LESymbiosis

CELL HOST & MICROBE, 24(1), 109-+.

co-author countries: Germany 🇩🇪 France 🇫🇷 United States of America 🇺🇸
MeSH headings : Acetate Kinase / genetics; Acetate Kinase / metabolism; Adaptation, Physiological; Animals; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Drosophila melanogaster / microbiology; Evolution, Molecular; Glutamine / analogs & derivatives; Glutamine / metabolism; Host Microbial Interactions; Lactobacillus plantarum / genetics; Lactobacillus plantarum / growth & development; Larva / microbiology; Microbiota; Mutation; Symbiosis
Source: Web Of Science
Added: August 6, 2018

2018 journal article

Mathematical Modeling of RNA-Based Architectures for Closed Loop Control of Gene Expression

ACS SYNTHETIC BIOLOGY, 7(5), 1219–1228.

By: D. Agrawal*, X. Tang*, A. Westbrook*, R. Marshall*, C. Maxwell n, J. Lucks*, V. Noireaux*, C. Beisel n, M. Dunlop*, E. Franco*

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
author keywords: RNA; feedback; gene expression; mathematical modeling; control; sensitivity analysis
MeSH headings : CRISPR-Cas Systems; Computational Biology / methods; Feedback, Physiological / physiology; Gene Expression Regulation; Models, Theoretical; RNA / chemistry; Synthetic Biology / methods
Source: Web Of Science
Added: August 6, 2018

2018 journal article

CRISPR RNA-Dependent Binding and Cleavage of Endogenous RNAs by the Campylobacter jejuni Cas9

MOLECULAR CELL, 69(5), 893-+.

By: G. Dugar*, R. Leenay n, S. Eisenbart*, T. Bischler*, B. Aul*, C. Beisel n, C. Sharma*

co-author countries: Germany 🇩🇪 United States of America 🇺🇸
MeSH headings : CRISPR-Associated Protein 9 / genetics; CRISPR-Associated Protein 9 / metabolism; CRISPR-Cas Systems / physiology; Campylobacter jejuni / enzymology; Campylobacter jejuni / genetics; DNA, Bacterial / genetics; DNA, Bacterial / metabolism; Protein Domains; RNA Stability / physiology; RNA, Bacterial / genetics; RNA, Bacterial / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism
Source: Web Of Science
Added: August 6, 2018

2018 journal article

Rapid and Scalable Characterization of CRISPR Technologies Using an E. coli Cell-Free Transcription-Translation System

MOLECULAR CELL, 69(1), 146-+.

By: R. Marshall*, C. Maxwell n, S. Collins n, T. Jacobsen n, M. Luo n, M. Begemann*, B. Gray*, E. January* ...

co-author countries: United States of America 🇺🇸
MeSH headings : CRISPR-Cas Systems / genetics; Cell-Free System / metabolism; Clustered Regularly Interspaced Short Palindromic Repeats / genetics; DNA, Bacterial / genetics; Endonucleases / metabolism; Escherichia coli / genetics; Genetic Engineering / methods; Oryza / genetics; Protein Biosynthesis / genetics; RNA, Guide, Kinetoplastida / genetics; Transcription, Genetic / genetics
Source: Web Of Science
Added: August 6, 2018

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