Synthetic and Systems Biology - 2020

Broeck, L. V., Spurney, R. J., Fisher, A. P., Schwartz, M., Clark, N. M., Nguyen, T. T., … Sozzani, R. (2020, December 1). Exchange of molecular and cellular information: a hybrid model that integrates stem cell divisions and key regulatory interactions. https://doi.org/10.1101/2020.11.30.404426

Saberi-Bosari, S., Flores, K. B., & San-Miguel, A. (2020, March 9). Deep learning-enabled phenotyping reveals distinct patterns of neurodegeneration induced by aging and cold-shock. https://doi.org/10.1101/2020.03.08.982074

Crawford, Z., & San-Miguel, A. (2020). An inexpensive programmable optogenetic platform for controlled neuronal activation regimens inC. elegans. APL Bioengineering, 4(1), 016101. https://doi.org/10.1063/1.5120002

A reference map of the human binary protein interactome. (2020). Nature, 580(7803), 402–408. https://doi.org/10.1038/s41586-020-2188-x

Sen, D., & Keung, A. J. (2020). [Review of Capturing complex epigenetic phenomena through human multicellular systems]. CURRENT OPINION IN BIOMEDICAL ENGINEERING, 16, 34–41. https://doi.org/10.1016/j.cobme.2020.05.008

Liu, C., Li, K., Wang, M., Fan, E., Yang, C., Wang, J., … Qu, G. (2020). Qu-2, a robust poplar suspension cell line for molecular biology. JOURNAL OF FORESTRY RESEARCH. https://doi.org/10.1007/s11676-020-01266-9

Crook, A. D., Willoughby, A. C., Hazak, O., Okuda, S., VanDerMolen, K. R., Soyars, C. L., … Nimchuk, Z. L. (2020). BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(51), 32750–32756. https://doi.org/10.1073/pnas.2018565117

Van Norman, J. M., Strader, L. C., & Sozzani, R. (2020, October). Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth. CURRENT OPINION IN PLANT BIOLOGY, Vol. 57, pp. A1–A3. https://doi.org/10.1016/j.pbi.2020.11.001

Niu, B., Wang, W., Yuan, Z., Sederoff, R. R., Sederoff, H., Chiang, V. L., & Borriss, R. (2020). [Review of Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease]. FRONTIERS IN MICROBIOLOGY, 11. https://doi.org/10.3389/fmicb.2020.585404

Sen, D., Voulgaropoulos, A., Drobna, Z., & Keung, A. J. (2020). Human Cerebral Organoids Reveal Early Spatiotemporal Dynamics and Pharmacological Responses of UBE3A. STEM CELL REPORTS, 15(4), 845–854. https://doi.org/10.1016/j.stemcr.2020.08.006

Saberi-Bosari, S., Flores, K. B., & San-Miguel, A. (2020). Deep learning-enabled analysis reveals distinct neuronal phenotypes induced by aging and cold-shock. BMC BIOLOGY, 18(1). https://doi.org/10.1186/s12915-020-00861-w

San Miguel, A., Ramirez, J., & Flores, K. (2020, April). Lifelong Analysis of Key Aging Genes as Determinants of Lifespan in <it>C</it>. <it>elegans</it>. FASEB JOURNAL, Vol. 34. https://doi.org/10.1096/fasebj.2020.34.s1.00160

Madison, I., Melvin, C., Buckner, E., Williams, C., Sozzani, R., & Long, T. (2020). MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy. In Methods in Cell Biology (Vol. 160, pp. 405–418). https://doi.org/10.1016/bs.mcb.2020.04.004

Buckner, E., Madison, I., Melvin, C., Long, T., Sozzani, R., & Williams, C. (2020). BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana. In Methods in Cell Biology (Vol. 160, pp. 419–436). https://doi.org/10.1016/bs.mcb.2020.04.017

Clark, N. M., Fisher, A. P., Berckmans, B., Van den Broeck, L., Nelson, E. C., Nguyen, T. T., … Sozzani, R. (2020). Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division. Proceedings of the National Academy of Sciences, 117(26), 15332–15342. https://doi.org/10.1073/pnas.2002166117

Clark, N. M., Van den Broeck, L., Guichard, M., Stager, A., Tanner, H. G., Blilou, I., … Sozzani, R. (2020). Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big. Annual Review of Plant Biology, 71(1), 789–816. https://doi.org/10.1146/annurev-arplant-050718-100038

Van den Broeck, L., Gordon, M., Inzé, D., Williams, C., & Sozzani, R. (2020). Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling. Frontiers in Genetics, 11. https://doi.org/10.3389/fgene.2020.00457

Lin, K. N., Volkel, K., Tuck, J. M., & Keung, A. J. (2020). Dynamic and scalable DNA-based information storage. NATURE COMMUNICATIONS, 11(1). https://doi.org/10.1038/s41467-020-16797-2

Utility of stable isotope ratios of tap water and human hair in determining region of origin in Central and Southern Mexico. (2020). In Forensic Science and Humanitarian Action. https://doi.org/10.1002/9781119482062.ch23

Ravishankar, E., Booth, R. E., Saravitz, C., Sederoff, H., Ade, H. W., & Brendan T. O'Connor. (2020). Achieving Net Zero Energy Greenhouses by Integrating Semitransparent Organic Solar Cells. JOULE, 4(2), 490–506. https://doi.org/10.1016/j.joule.2019.12.018

Lee, M.-H., Luo, H.-R., Bae, S. H., & San-Miguel, A. (2020, January 4). Genetic and Chemical Effects on Somatic and Germline Aging. OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, Vol. 2020. https://doi.org/10.1155/2020/4684890

Spurney, R. J., Broeck, L., Clark, N. M., Fisher, A. P., Balaguer, M. A. de L., & Sozzani, R. (2020). tuxnet: a simple interface to process RNA sequencing data and infer gene regulatory networks. PLANT JOURNAL, 101(3), 716–730. https://doi.org/10.1111/tpj.14558