Synthetic and Systems Biology - 2021

Annabi, N., Baker, M., Boettiger, A., Chakraborty, D., Chen, Y., Corbett, K. S., … Wang, J. (2021, March). Voices of biotech research. NATURE BIOTECHNOLOGY, Vol. 39, pp. 281–286. https://doi.org/10.1038/s41587-021-00847-1

Betegon-Putze, I., Mercadal, J., Bosch, N., Planas-Riverola, A., Marques-Bueno, M., Vilarrasa-Blasi, J., … Cano-Delgado, A. I. (2021). Precise transcriptional control of cellular quiescence by BRAVO/WOX5 complex in Arabidopsis roots. MOLECULAR SYSTEMS BIOLOGY, 6. https://doi.org/10.15252/msb.20209864

Clark, N. M., Nolan, T. M., Wang, P., Song, G., Montes, C., Valentine, C. T., … Walley, J. W. (2021). Integrated omics networks reveal the temporal signaling events of brassinosteroid response in Arabidopsis. NATURE COMMUNICATIONS, 10. https://doi.org/10.1038/s41467-021-26165-3

Hodgens, C., Akpa, B. S., & Long, T. A. (2021). [Review of Solving the puzzle of Fe homeostasis by integrating molecular, mathematical, and societal models]. CURRENT OPINION IN PLANT BIOLOGY, 64, 102149. https://doi.org/10.1016/j.pbi.2021.102149

Lee, J. B., Caywood, L. M., Lo, J. Y., Levering, N., & Keung, A. J. (2021). Mapping the dynamic transfer functions of eukaryotic gene regulation. CELL SYSTEMS. https://doi.org/10.1016/j.cels.2021.08.003

Li, Y., Li, X., Zhao, M.-H., Pang, Z.-Y., Wei, J.-T., Tigabu, M., … Zhao, X.-Y. (2021). [Review of An Overview of the Practices and Management Methods for Enhancing Seed Production in Conifer Plantations for Commercial Use]. HORTICULTURAE. https://doi.org/10.3390/horticulturae7080252

Matange, K., Tuck, J. M., & Keung, A. J. (2021). [Review of DNA stability: a central design consideration for DNA data storage systems]. NATURE COMMUNICATIONS, 12(1). https://doi.org/10.1038/s41467-021-21587-5

McDaniel, M., Flores, K. B., & Akpa, B. S. (2021, July 19). Predicting Inter-individual Variability During Lipid Resuscitation of Bupivacaine Cardiotoxicity in Rats: A Virtual Population Modeling Study. DRUGS IN R&D, Vol. 7. https://doi.org/10.1007/s40268-021-00353-4

Orozco-Navarrete, B., Song, J., Casanal, A., Sozzani, R., Flors, V., Sanchez-Sevilla, J. F., … Valpuesta, V. (2021). Down-regulation of Fra a 1.02 in strawberry fruits causes transcriptomic and metabolic changes compatible with an altered defense response. HORTICULTURE RESEARCH, 8(1). https://doi.org/10.1038/s41438-021-00492-4

Ravishankar, E., Charles, M., Xiong, Y., Henry, R., Swift, J., Rech, J., … Brendan T. O'Connor. (2021). Balancing crop production and energy harvesting in organic solar-powered greenhouses. CELL REPORTS PHYSICAL SCIENCE, 3. https://doi.org/10.1016/j.xcrp.2021.100381

Roszak, P., Heo, J.-O., Blob, B., Toyokura, K., Sugiyama, Y., Balaguer, M. A. de L., … Helariutta, Y. (2021). Cell-by-cell dissection of phloem development links a maturation gradient to cell specialization. SCIENCE, 12. https://doi.org/10.1126/science.aba5531

Schwartz, M. F., Peters, R., Hunt, A. M., Abdul-Matin, A.-K., Broeck, L., & Sozzani, R. (2021). Divide and Conquer: The Initiation and Proliferation of Meristems. CRITICAL REVIEWS IN PLANT SCIENCES. https://doi.org/10.1080/07352689.2021.1915228

Sen, D., Drobna, Z., & Keung, A. J. (2021). Evaluation of UBE3A antibodies in mice and human cerebral organoids. SCIENTIFIC REPORTS. https://doi.org/10.1038/s41598-021-85923-x

Sen, D., Voulgaropoulos, A., & Keung, A. J. (2021). Effects of early geometric confinement on the transcriptomic profile of human cerebral organoids. BMC BIOTECHNOLOGY. https://doi.org/10.1186/s12896-021-00718-2

Spurney, R., Schwartz, M., Gobble, M., Sozzani, R., & Broeck, L. (2021). Spatiotemporal Gene Expression Profiling and Network Inference: A Roadmap for Analysis, Visualization, and Key Gene Identification. MODELING TRANSCRIPTIONAL REGULATION. https://doi.org/10.1007/978-1-0716-1534-8_4

Tomek, K. J., Volkel, K., Indermaur, E. W., Tuck, J. M., & Keung, A. J. (2021). Promiscuous molecules for smarter file operations in DNA-based data storage. NATURE COMMUNICATIONS. https://doi.org/10.1038/s41467-021-23669-w

Waldman, A. C., Rao, B. M., & Keung, A. J. (2021). Mapping the residue specificities of epigenome enzymes by yeast surface display. CELL CHEMICAL BIOLOGY. https://doi.org/10.1016/j.chembiol.2021.05.022

Wang, J., Chen, B., Ali, S., Zhang, T., Wang, Y., Zhang, H., … Zhang, Q. (2021, December 4). Epigenetic modification associated with climate regulates betulin biosynthesis in birch. JOURNAL OF FORESTRY RESEARCH, Vol. 12. https://doi.org/10.1007/s11676-021-01424-7