Synthetic and Systems Biology
NC State
Works Published in 2017
Displaying all 13 works
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2017 chapter
Measuring Protein Movement, Oligomerization State, and Protein–Protein Interaction in Arabidopsis Roots Using Scanning Fluorescence Correlation Spectroscopy (Scanning FCS)
In W. Busch (Ed.), Plant Genomics (pp. 251–266).
Ed(s): W. Busch
author keywords: Scanning fluorescence correlation spectroscopy; Diffusion coefficient; Protein movement; Oligomerization state; Protein stoichiometry
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Plant Roots / metabolism; Spectrometry, Fluorescence / methods
Sources: Web Of Science, ORCID
Added: February 8, 2019
2017 chapter
Inferring Gene Regulatory Networks in the Arabidopsis Root Using a Dynamic Bayesian Network Approach
In K. Kaufmann & B. Mueller-Roeber (Eds.), Plant Gene Regulatory Networks (pp. 331–348).
Ed(s): K. Kaufmann & B. Mueller-Roeber
author keywords: Gene regulatory network; Dynamic Bayesian network; Ordinary differential equation; Arabidopsis root
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Computational Biology / methods; Databases, Genetic; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Regulatory Networks; Plant Roots / genetics; Reproducibility of Results
Sources: Web Of Science, ORCID
Added: February 8, 2019
2017 journal article
Dose-Duration Reciprocity for G protein activation: Modulation of kinase to substrate ratio alters cell signaling
PLOS ONE, 12(12).
MeSH headings : Arabidopsis / enzymology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis Proteins / metabolism; GTP-Binding Proteins / metabolism; Genotype; Phosphorylation; Phosphotransferases / metabolism; Signal Transduction; Substrate Specificity
journals.plos.org (publisher PDF)
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Framework for gradual progression of cell ontogeny in the Arabidopsis root meristem
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(42), E8922–E8929.
author keywords: plant development; root meristem; Arabidopsis; transcriptional regulation
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis Proteins / genetics; Flow Cytometry / methods; Gene Expression Regulation, Plant; Green Fluorescent Proteins / genetics; Meristem / cytology; Meristem / genetics; Plant Cells; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / growth & development; Plants, Genetically Modified
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 article
Differential Effects of Sterols on Ion Channels: Stereospecific Binding vs Stereospecific Response
STEROL REGULATION OF ION CHANNELS, Vol. 80, pp. 25–50.
MeSH headings : Cell Membrane / metabolism; Humans; Ion Channels / chemistry; Ion Channels / metabolism; Protein Binding; Stereoisomerism; Sterols / chemistry; Sterols / metabolism; Sterols / pharmacology; Substrate Specificity
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Construction and setup of a bench-scale algal photosynthetic bioreactor with temperature, light, and pH monitoring for kinetic growth tests
Journal of Visualized Experiments, 2017(124).
author keywords: Bioengineering; Issue 124; Photosynthetic bioreactors; microalgae; growth kinetics; biofuel; temperature; light; pH; automated monitoring
MeSH headings : Biofuels; Bioreactors / microbiology; Hydrogen-Ion Concentration; Kinetics; Light; Microalgae / growth & development; Models, Biological; Photosynthesis; Temperature
Sources: ORCID, NC State University Libraries
Added: August 6, 2018
2017 journal article
Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7632–E7640.
author keywords: root stem cell; root development; cell-type expression profile; gene regulatory network; modeling
MeSH headings : Algorithms; Arabidopsis / genetics; Bayes Theorem; Cluster Analysis; Computational Biology / methods; Gene Expression Profiling / methods; Gene Expression Regulation, Plant / genetics; Gene Regulatory Networks / genetics; Plant Roots / genetics; Stem Cells / metabolism; Transcription Factors / genetics; Transcriptome / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Genetic Architecture and Molecular Networks Underlying Leaf Thickness in Desert-Adapted Tomato Solanum pennellii
PLANT PHYSIOLOGY, 175(1), 376–391.
MeSH headings : Adaptation, Physiological / genetics; Bayes Theorem; Desert Climate; Gene Regulatory Networks; Organ Specificity; Phenotype; Plant Leaves / anatomy & histology; Plant Leaves / genetics; Plant Leaves / growth & development; Plant Leaves / physiology; Quantitative Trait Loci / genetics; Sequence Analysis, RNA; Solanum / anatomy & histology; Solanum / genetics; Solanum / growth & development; Solanum / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 114(36), E7641–E7649.
author keywords: plant hormones; cell differentiation; root meristem; computational modeling
MeSH headings : Arabidopsis / metabolism; Arabidopsis / physiology; Arabidopsis Proteins / metabolism; Biological Transport / physiology; Cell Differentiation / physiology; Cell Division / physiology; Cytokinins / metabolism; Gene Expression Regulation, Plant / physiology; Indoleacetic Acids / metabolism; Meristem / metabolism; Meristem / physiology; Plant Growth Regulators / metabolism; Plant Roots / metabolism; Plant Roots / physiology; Signal Transduction / physiology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Using spectral and cumulative spectral entropy to classify anomalous diffusion in Sephadex (TM) gels
COMPUTERS & MATHEMATICS WITH APPLICATIONS, 73(5), 765–774.
author keywords: Anomalous diffusion; Fractional derivative; Cumulative spectral entropy; Continuous time random walk; Magnetic resonance imaging; Sephadex (TM) gel
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Amino Acids Are an Ineffective Fertilizer for Dunaliella spp. Growth
FRONTIERS IN PLANT SCIENCE, 8.
author keywords: Dunaliella; nitrogen recycling; lipids; biofuel; amino acids; sustainability
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Molecular-Scale Biophysical Modulation of an Endothelial Membrane by Oxidized Phospholipids
BIOPHYSICAL JOURNAL, 112(2), 325–338.
MeSH headings : Animals; Biomechanical Phenomena / drug effects; Cattle; Cell Membrane / chemistry; Cell Membrane / drug effects; Cell Membrane / metabolism; Endothelial Cells / cytology; Lipid Bilayers / chemistry; Lipid Bilayers / metabolism; Mechanical Phenomena / drug effects; Molecular Conformation; Molecular Dynamics Simulation; Phospholipid Ethers / chemistry; Phospholipid Ethers / pharmacology
Sources: Web Of Science, ORCID
Added: August 6, 2018
2017 journal article
Accumulation of medium-chain, saturated fatty acyl moieties in seed oils of transgenic Camelina sativa
PLOS ONE, 12(2).
MeSH headings : 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase / deficiency; 3-Oxoacyl-(Acyl-Carrier-Protein) Synthase / genetics; Brassicaceae / genetics; Brassicaceae / metabolism; Plant Oils / metabolism; Plants, Genetically Modified; RNA Interference; Seeds / metabolism; Thiolester Hydrolases / genetics; Triglycerides / chemistry; Triglycerides / metabolism; Umbellularia / enzymology; Umbellularia / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018
