Works Published in 2020

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Displaying works 1 - 20 of 21 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2020 article

Deep learning-enabled phenotyping reveals distinct patterns of neurodegeneration induced by aging and cold-shock

Saberi-Bosari, S., Flores, K. B., & San-Miguel, A. (2020, March 9).

By: S. Saberi-Bosari n, K. Flores n & A. San-Miguel n

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: May 31, 2023

2020 journal article

An inexpensive programmable optogenetic platform for controlled neuronal activation regimens inC. elegans

APL Bioengineering, 4(1), 016101.

co-author countries: United States of America 🇺🇸
Source: ORCID
Added: May 31, 2023

2020 journal article

A reference map of the human binary protein interactome

Nature, 580(7803), 402–408.

MeSH headings : Extracellular Space / metabolism; Humans; Organ Specificity; Protein Interaction Mapping; Proteome / metabolism
Source: ORCID
Added: May 31, 2023

2020 review

Capturing complex epigenetic phenomena through human multicellular systems

[Review of ]. CURRENT OPINION IN BIOMEDICAL ENGINEERING, 16, 34–41.

By: D. Sen n & A. Keung n

co-author countries: United States of America 🇺🇸
author keywords: Epigenetics; Organoids; Development; Aging; 3D; Multicellular
Source: Web Of Science
Added: June 10, 2021

2020 article

Qu-2, a robust poplar suspension cell line for molecular biology

JOURNAL OF FORESTRY RESEARCH.

By: C. Liu*, K. Li*, M. Wang*, E. Fan*, C. Yang*, J. Wang*, P. Fu*, X. Ge* ...

co-author countries: China 🇨🇳 United States of America 🇺🇸

Contributors: C. Liu*, K. Li*, M. Wang*, E. Fan*, C. Yang*, J. Wang*, P. Fu*, X. Ge* ...

author keywords: Qu-2 cell line; Suspension cell; Poplar; Protoplast isolation; Transient transformation
Source: ORCID
Added: February 3, 2021

2020 journal article

BAM1/2 receptor kinase signaling drives CLE peptide-mediated formative cell divisions in Arabidopsis roots

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(51), 32750–32756.

By: A. Crook*, A. Willoughby*, O. Hazak*, S. Okuda*, K. VanDerMolen*, C. Soyars*, P. Cattaneo*, N. Clark n ...

co-author countries: Switzerland 🇨🇭 United States of America 🇺🇸
author keywords: Arabidopsis; receptor kinase; cell cycle; SHORT-ROOT; CLE peptide
MeSH headings : Arabidopsis / cytology; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cell Division; Gene Expression Regulation, Plant; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Plant Cells / metabolism; Plant Roots / cytology; Plant Roots / genetics; Plant Roots / metabolism; Plants, Genetically Modified; Protein Serine-Threonine Kinases / genetics; Protein Serine-Threonine Kinases / metabolism; Signal Transduction; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: Web Of Science, ORCID
Added: January 19, 2021

2020 article

Editorial overview: Directionality and precision - how signaling and gene regulation drive plant development and growth

Van Norman, J. M., Strader, L. C., & Sozzani, R. (2020, October). CURRENT OPINION IN PLANT BIOLOGY, Vol. 57, pp. A1–A3.

By: J. Van Norman*, L. Strader* & R. Sozzani n

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: January 19, 2021

2020 review

Microbial Interactions Within Multiple-Strain Biological Control Agents Impact Soil-Borne Plant Disease

[Review of ]. FRONTIERS IN MICROBIOLOGY, 11.

By: B. Niu*, W. Wang*, Z. Yuan*, R. Sederoff n, H. Sederoff n, V. Chiang n, R. Borriss*

co-author countries: China 🇨🇳 Germany 🇩🇪 United States of America 🇺🇸

Contributors: B. Niu*, W. Wang*, Z. Yuan*, R. Sederoff n, H. Sederoff n, V. Chiang n, R. Borriss*

author keywords: microbial interaction; biological control agents; soil-borne disease; consortia; microbiome and community
Sources: Web Of Science, ORCID
Added: November 16, 2020

2020 journal article

Human Cerebral Organoids Reveal Early Spatiotemporal Dynamics and Pharmacological Responses of UBE3A

STEM CELL REPORTS, 15(4), 845–854.

co-author countries: United States of America 🇺🇸
MeSH headings : Angelman Syndrome / pathology; Cell Line; Cell Nucleus / drug effects; Cell Nucleus / metabolism; Cerebrum / metabolism; Genomic Imprinting / drug effects; Humans; Neurons / drug effects; Neurons / metabolism; Organoids / drug effects; Organoids / metabolism; Time Factors; Topoisomerase Inhibitors / pharmacology; Ubiquitin-Protein Ligases / metabolism
Source: Web Of Science
Added: November 9, 2020

2020 journal article

Deep learning-enabled analysis reveals distinct neuronal phenotypes induced by aging and cold-shock

BMC BIOLOGY, 18(1).

By: S. Saberi-Bosari n, K. Flores n & A. San-Miguel n

co-author countries: United States of America 🇺🇸
author keywords: Deep learning; Convolutional neural networks; Neurodegeneration; Neuronal beading; Aging; Machine learning; Phenotyping; C; elegans
MeSH headings : Aging / physiology; Animals; Caenorhabditis elegans / physiology; Cold-Shock Response / physiology; Deep Learning; Neurons / physiology; Phenotype
Sources: Web Of Science, ORCID
Added: October 26, 2020

2020 article

Lifelong Analysis of Key Aging Genes as Determinants of Lifespan in C. elegans

San Miguel, A., Ramirez, J., & Flores, K. (2020, April). FASEB JOURNAL, Vol. 34.

co-author countries: United States of America 🇺🇸
Sources: Web Of Science, ORCID
Added: October 12, 2020

2020 chapter

MAGIC: Live imaging of cellular division in plant seedlings using lightsheet microscopy

In Methods in Cell Biology (Vol. 160, pp. 405–418).

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / cytology; Arabidopsis / growth & development; Cell Division; Imaging, Three-Dimensional; Microscopy, Fluorescence / methods; Seedlings / cytology; Seedlings / growth & development
Sources: Crossref, ORCID, Web Of Science
Added: September 14, 2020

2020 chapter

BioVision Tracker: A semi-automated image analysis software for spatiotemporal gene expression tracking in Arabidopsis thaliana

In Methods in Cell Biology (Vol. 160, pp. 419–436).

co-author countries: United States of America 🇺🇸
MeSH headings : Arabidopsis / genetics; Automation; Gene Expression Regulation, Plant; Image Processing, Computer-Assisted; Plant Roots / anatomy & histology; Software; Time Factors
Sources: Crossref, ORCID, Web Of Science
Added: September 14, 2020

2020 journal article

Protein complex stoichiometry and expression dynamics of transcription factors modulate stem cell division

Proceedings of the National Academy of Sciences, 117(26), 15332–15342.

By: N. Clark n, A. Fisher n, B. Berckmans*, L. Van den Broeck n, E. Nelson n, T. Nguyen n, E. Bustillo-Avendaño*, S. Zebell* ...

co-author countries: Germany 🇩🇪 Spain 🇪🇸 United States of America 🇺🇸
author keywords: protein complex stoichiometry; intercellular protein movement; mathematical modeling; expression dynamics; transcription factor
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Biomarkers; Cell Differentiation; Gene Expression Regulation, Plant / physiology; Models, Biological; Mutation; Stem Cells / physiology; Transcription Factors / genetics; Transcription Factors / metabolism
Sources: Crossref, ORCID
Added: September 14, 2020

2020 journal article

Novel Imaging Modalities Shedding Light on Plant Biology: Start Small and Grow Big

Annual Review of Plant Biology, 71(1), 789–816.

co-author countries: Germany 🇩🇪 Saudi Arabia 🇸🇦 United States of America 🇺🇸
author keywords: Forster resonance energy transfer; scanning fluorescent correlation spectroscopy; microfluid devices; light sheet microscopy; imaging of macroscopic traits; multiscale imaging techniques
MeSH headings : Biology; Plant Development; Plants
Sources: Crossref, ORCID
Added: September 14, 2020

2020 journal article

Gene Regulatory Network Inference: Connecting Plant Biology and Mathematical Modeling

Frontiers in Genetics, 11.

co-author countries: Belgium 🇧🇪 United States of America 🇺🇸
author keywords: gene regulatory network; network properties; network inference; machine learning; experimental methodologies
Sources: Crossref, ORCID, Web Of Science
Added: July 13, 2020

2020 journal article

Dynamic and scalable DNA-based information storage

NATURE COMMUNICATIONS, 11(1).

By: K. Lin n, K. Volkel n, J. Tuck n & A. Keung n

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Bacteriophage T7 / genetics; DNA / genetics; DNA, Single-Stranded / genetics; Gene Expression Regulation, Viral; Genetic Code; Models, Genetic; Promoter Regions, Genetic / genetics; Transcription, Genetic
Source: Web Of Science
Added: July 13, 2020

2020 chapter

Utility of stable isotope ratios of tap water and human hair in determining region of origin in Central and Southern Mexico

In Forensic Science and Humanitarian Action.

Source: ORCID
Added: April 7, 2020

2020 journal article

Achieving Net Zero Energy Greenhouses by Integrating Semitransparent Organic Solar Cells

JOULE, 4(2), 490–506.

co-author countries: United States of America 🇺🇸

Contributors: E. Ravishankar n, R. Booth n, C. Saravitz n, H. Sederoff n, H. Ade n & . B.T. O'Connor

Sources: Web Of Science, ORCID
Added: March 10, 2020

2020 article

Genetic and Chemical Effects on Somatic and Germline Aging

Lee, M.-H., Luo, H.-R., Bae, S. H., & San-Miguel, A. (2020, January 4). OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, Vol. 2020.

co-author countries: China 🇨🇳 Korea (Republic of) 🇰🇷 United States of America 🇺🇸
MeSH headings : Aging / genetics; Animals; Germ Cells; Humans; MicroRNAs / genetics; Mutation / genetics; Reproduction / genetics; Sirtuin 1 / genetics; Sirtuin 1 / metabolism; TRPC Cation Channels / genetics; TRPC Cation Channels / metabolism
Sources: Web Of Science, ORCID
Added: January 27, 2020