Fungal Genomics Laboratory

NC State

Works Published in 2011

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Displaying all 8 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

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2011 journal article

Characterization and application of small RNAs and RNA silencing mechanisms in fungi

Fungal Biology Reviews, 25(4), 172–180.

By: C. Nunes n, J. Sailsbery n & R. Dean n 

Sources: Crossref, ORCID
Added: August 28, 2020

2011 journal article

Evaluation of Normalization Methods on GeLC-MS/MS Label-Free Spectral Counting Data to Correct for Variation during Proteomic Workflows

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(12), 2199–2208.

By: E. Gokce n, C. Shuford n, W. Franck n, R. Dean n  & D. Muddiman n 

author keywords: Label-free; Proteomics; Mass spectrometry; Total spectral count normalization; Normalized spectral abundance factor; Quantification; Spectral counting; Significance test; Fold-change; GeLC-MS/MS; nanoLC-MS; Orbitrap XL
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae

BMC Genomics, 12.

By: C. Nunes n, M. Gowda  n, J. Sailsbery n, M. Xue  n, F. Chen *, D. Brown n, Y. Oh n, T. Mitchell*, R. Dean n 

MeSH headings : Base Sequence; DNA, Intergenic / genetics; Gene Expression Profiling; Hyphae / genetics; Magnaporthe / genetics; Magnaporthe / physiology; Molecular Sequence Data; Plants / microbiology; RNA, Fungal / genetics; RNA, Small Untranslated / genetics; RNA, Transfer / genetics; Repetitive Sequences, Nucleic Acid / genetics; Sequence Analysis, RNA
Sources: NC State University Libraries, ORCID
Added: August 6, 2018

2011 journal article

Comparison of stable-isotope labeling with amino acids in cell culture and spectral counting for relative quantification of protein expression

RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 25(17), 2524–2532.

By: T. Collier n, S. Randall n, P. Sarkar n, B. Rao n, R. Dean n  & D. Muddiman n 

MeSH headings : Amino Acid Sequence; Amino Acids / chemistry; Amino Acids / metabolism; Animals; Cell Differentiation; Cell Line; Ectoderm; Embryonic Stem Cells / cytology; Embryonic Stem Cells / metabolism; Humans; Isotope Labeling / methods; Mass Spectrometry; Mice; Molecular Sequence Data; Peptide Fragments; Peptide Mapping; Proteins / analysis; Proteins / chemistry; Proteins / metabolism; Proteomics / methods; Sensitivity and Specificity; Tandem Mass Spectrometry; Time Factors
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Increasing proteome coverage with offline RP HPLC coupled to online RP nanoLC-MS

JOURNAL OF CHROMATOGRAPHY B-ANALYTICAL TECHNOLOGIES IN THE BIOMEDICAL AND LIFE SCIENCES, 879(9-10), 610–614.

By: E. Gokce n, G. Andrews n, R. Dean n  & D. Muddiman n 

author keywords: RP HPLC; Fractionation methods; Proteomics; Mass spectrometry
MeSH headings : Chromatography, High Pressure Liquid / methods; Chromatography, Reverse-Phase / methods; Mass Spectrometry / methods; Nanotechnology; Peptide Fragments / analysis; Peptide Fragments / metabolism; Proteome / analysis; Proteome / metabolism; Proteomics / methods; Saccharomyces cerevisiae Proteins / analysis; Saccharomyces cerevisiae Proteins / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Improving Proteome Coverage on a LTQ-Orbitrap Using Design of Experiments

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 22(4), 773–783.

By: G. Andrews n, R. Dean n , A. Hawkridge n & D. Muddiman n 

author keywords: LTQ-Orbitrap XL MS/MS instrument parameters; Design of experiments; Fractional-factorial design; Saccharomyces cerevisiae; Proteomics
MeSH headings : Peptide Fragments; Peptide Mapping; Proteome / chemistry; Proteomics / methods; Research Design; Saccharomyces cerevisiae Proteins / chemistry; Tandem Mass Spectrometry / methods; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

MoSfl1 Is Important for Virulence and Heat Tolerance in Magnaporthe oryzae

PLOS ONE, 6(5).

By: G. Li *, X. Zhou *, L. Kong *, Y. Wang *, H. Zhang *, H. Zhu *, T. Mitchell*, R. Dean n , J. Xu *

MeSH headings : Adaptation, Physiological; Genes, Fungal; Hot Temperature; Magnaporthe / genetics; Magnaporthe / pathogenicity; Magnaporthe / physiology; Virulence
Sources: Web Of Science, ORCID
Added: August 6, 2018

2011 journal article

Transcriptome profiling of the rice blast fungus during invasive plant infection and in vitro stresses

BMC GENOMICS, 12.

By: S. Mathioni *, A. Belo*, C. Rizzo *, R. Dean n  & N. Donofrio*

MeSH headings : Fungal Proteins / genetics; Gene Expression Profiling; Gene Expression Regulation, Fungal / genetics; Gene Expression Regulation, Fungal / physiology; Magnaporthe / genetics; Magnaporthe / growth & development; Magnaporthe / pathogenicity; Oryza / microbiology; Oxidative Stress / physiology; Reverse Transcriptase Polymerase Chain Reaction; Temperature
Sources: Web Of Science, ORCID
Added: August 6, 2018