Fungal Genomics Laboratory

NC State

Works Published in 2016

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Displaying all 4 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2023 2022 2021 2020 2019 2018 2017

2016 journal article

Examining ubiquitinated peptide enrichment efficiency through an epitope labeled protein

ANALYTICAL BIOCHEMISTRY, 512, 114–119.

By: J. Parker  n, Y. Oh n, Y. Moazami n, J. Pierce n , P. Loziuk n, R. Dean n , D. Muddiman n 

author keywords: Ubiquitination; Gly-Gly enrichment; Enrichment efficiency
MeSH headings : Antibodies, Monoclonal, Murine-Derived / chemistry; Epitopes / chemistry; Muramidase / chemistry; Ubiquitinated Proteins / chemistry; Ubiquitination
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 review

Form and function of fungal and oomycete effectors

[Review of ]. FUNGAL BIOLOGY REVIEWS, 30(2), 62–73.

By: W. Sharpee n & R. Dean n 

author keywords: Effector; Effectoromics; MAMP-Triggered immunity (MTI); Reactive oxygen species (ROS); Systemic acquired resistance (SAR)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2016 article

The influence of funding sources on the scientific method

Okagaki, L. H., & Dean, R. A. (2016, June). MOLECULAR PLANT PATHOLOGY, Vol. 17, pp. 651–653.

By: L. Okagaki n & R. Dean n 

MeSH headings : Evolution, Molecular; Financial Management; Genome, Plant / genetics; Models, Theoretical; Research / economics; Science / education; Science / standards
Sources: Web Of Science, ORCID
Added: August 6, 2018
Sample of matching MeSH headings :
  • Science / education
  • Science / standards
Sample of matching concepts of works:
  • Data science
  • Computer science
Abstract matches:
  • Funding for scientific research in the USA has become harder to obtain, especially for discovery‐based science, requiring the analysis of large datasets to find patterns and correlations. It is through such analysis that new hypotheses are formulated and dogma refuted, particularly as it pertains to science in the ‘‐omics’ era. The battle for funding has led to a change in the types of experiment that are being proposed by scientists.
  • However, focusing on previously studied virulence traits and genes narrows our view of the biological processes that occur between host and pathogen.
  • Such large‐scale analyses go beyond ‘fishing expeditions’ and have shed light on biological functions that may or may not be involved in pathogenesis.

2016 journal article

Comparative genome analysis and genome evolution of members of the magnaporthaceae family of fungi

BMC GENOMICS, 17.

By: L. Okagaki n, J. Sailsbery n, A. Eyre n & R. Dean n 

author keywords: Magnaporthaceae; Magnaporthe; Gaeumannomyces; Two-speed genome; Zig zag model; Comparative genomics; CAzymes; Transcription factors; Diversifying selection; Purifying selection
MeSH headings : Ascomycota / classification; Ascomycota / genetics; Biological Evolution; Comparative Genomic Hybridization; Fungal Proteins / genetics; Genome, Fungal; Magnaporthe / genetics; Multigene Family; Phylogeny; Proteome; Species Specificity; Transcription Factors / genetics
Sources: Web Of Science, ORCID
Added: August 6, 2018