Works Published in 2015

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Displaying works 21 - 40 of 44 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2015 journal article

Predicting characteristics of rainfall driven estrogen runoff and transport from swine AFO spray fields

SCIENCE OF THE TOTAL ENVIRONMENT, 532, 571–580.

By: B. Lee*, S. Kullman n, E. Yost n, M. Meyer*, L. Worley-Davis n, C. Williams n, K. Reckhow*

author keywords: Estrogen runoff and transport; Bayesian network model; Swine animal feeding operation; Spray fields
MeSH headings : Agriculture / methods; Animal Feed; Animals; Bayes Theorem; Environmental Monitoring / methods; Estrogens / analysis; Geologic Sediments; Manure; Models, Chemical; Rain; Soil / chemistry; Swine; Water Movements; Water Pollutants, Chemical / analysis; Water Pollution, Chemical / statistics & numerical data
TL;DR: What-if scenario analyses suggest that planting Bermuda grass in the spray fields is likely to reduce runoff losses of natural estrogens near the water bodies and ecosystems, as compared to planting of soybeans. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Mitochondrial DNA Fragmentation as a Molecular Tool to Monitor Thermal Processing of Plant-Derived, Low-Acid Foods, and Biomaterials

Journal of Food Science, 80(8), M1804–M1814.

author keywords: mitochondrial DNA; quantitative PCR; thermal processing
MeSH headings : Clostridium botulinum / isolation & purification; DNA Damage; DNA Fragmentation; DNA Primers; DNA, Mitochondrial / genetics; DNA, Mitochondrial / isolation & purification; DNA, Plant / genetics; DNA, Plant / isolation & purification; Food Contamination / analysis; Food Handling / methods; Food Microbiology; Fruit; Genes, Plant; Geobacillus stearothermophilus / isolation & purification; Hot Temperature; Ipomoea batatas / microbiology; Linear Models; Plant Proteins / genetics; Reproducibility of Results; Spores, Bacterial / isolation & purification; Vegetables
TL;DR: Data is presented as proof-of-concept for a molecular tool that can be used as a rapid, presumptive method for monitoring thermal processing in low-acid plant products. (via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

In-depth LC-MS/MS analysis of the chicken ovarian cancer proteome reveals conserved and novel differentially regulated proteins in humans

ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 407(22), 6851–6863.

By: A. Nepomuceno n, H. Shao*, K. Jing, Y. Ma*, J. Petitte n, M. Idowu*, D. Muddiman n, X. Fang*, A. Hawkridge*

author keywords: Mass spectrometry; Proteomics; Ovarian Cancer; Chicken; Ovostatin 2; OVOS2
MeSH headings : Amino Acid Sequence; Animals; Chickens; Chromatography, Liquid / methods; Conserved Sequence; Female; Gene Expression Regulation, Neoplastic; Humans; Mass Spectrometry / methods; Molecular Sequence Data; Neoplasm Proteins / metabolism; Ovarian Neoplasms / metabolism; Proteome / chemistry; Proteome / metabolism; Species Specificity
TL;DR: Analysis of the ovarian cancer proteome of the chicken provides the first evidence for involvement of OVOS2 in the pathogenesis of both chicken and human ovarian cancer. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (Web of Science; OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Global Proteomic Analysis of Functional Compartments in Immature Avian Follicles Using Laser Microdissection Coupled to LC-MS/MS

JOURNAL OF PROTEOME RESEARCH, 14(9), 3912–3923.

By: A. Nepomuceno n, D. Muddiman n & J. Petitte n

author keywords: microdissection; proteomics; ovary; follicle; avian; chicken; yolk; steroidogenesis; vitellogenin
MeSH headings : Animals; Avian Proteins / analysis; Avian Proteins / chemistry; Chickens; Chromatography, Liquid; Female; Laser Capture Microdissection / methods; Ovarian Follicle / chemistry; Proteome / analysis; Proteome / chemistry; Proteomics / methods; Tandem Mass Spectrometry
TL;DR: A global proteome for SWF, white yolk, and ovarian stroma of the avian ovary is provided that can be used as a baseline for future studies and verifies that the coupling of LMD with proteomic analysis can be use to evaluate proteins from small, physiologically functional compartments of complex tissue. (via Semantic Scholar)
UN Sustainable Development Goal Categories
14. Life Below Water (OpenAlex)
15. Life on Land (Web of Science)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Effect of strain on duck breast meat quality

The Journal of Applied Poultry Research, 24(3), 401–407.

author keywords: duck breast meat; strain; meat color; cook yield; tenderness
Sources: Web Of Science, Crossref
Added: August 6, 2018

2015 journal article

Transcriptome response to heat stress in a chicken hepatocellular carcinoma cell line

CELL STRESS & CHAPERONES, 20(6), 939–950.

By: L. Sun*, S. Lamont*, A. Cooksey*, F. McCarthy*, C. Tudor*, K. Vijay-Shanker*, R. DeRita*, M. Rothschild* ...

author keywords: Transcriptome; RNA-seq; Heat stress; Chicken; LMH cells
MeSH headings : Animals; Carcinoma, Hepatocellular / genetics; Cell Line, Tumor; Chickens; Heat-Shock Response / genetics; Heat-Shock Response / physiology; Hot Temperature; Transcriptome / genetics
TL;DR: The identified biological processes and pathways likely to function in adapting cells and organisms to hyperthermic stress should provide important insight to future efforts attempting to improve species abilities to withstand heat stress through genome-wide association studies and breeding. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Relaxing the Molecular Clock to Different Degrees for Different Substitution Types

MOLECULAR BIOLOGY AND EVOLUTION, 32(8), 1948–1961.

By: H. Lee n, N. Rodrigue* & J. Thorne n

author keywords: CpG transition rate; context-dependent substitution; relaxed molecular clock; divergence time estimation
MeSH headings : Animals; Biological Clocks / physiology; CpG Islands / physiology; DNA, Intergenic / genetics; Evolution, Molecular; Humans; Models, Biological
TL;DR: Through stochastic mapping of sequence histories from context-independent substitution models, this approach allows for context-dependent nucleotide substitutions to change their relative rates over time, and finds comparatively little rate variation over time for CpG to TpG substitutions. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Poultry Body Temperature Contributes to Invasion Control through Reduced Expression of Salmonella Pathogenicity Island 1 Genes in Salmonella enterica Serovars Typhimurium and Enteritidis

Applied and Environmental Microbiology, 81(23), 8192–8201.

Ed(s): C. Elkins

MeSH headings : Animals; Cecum / microbiology; Cecum / physiology; Chickens; Genomic Islands; Liver / microbiology; Liver / physiology; Poultry Diseases / genetics; Poultry Diseases / metabolism; Poultry Diseases / microbiology; Salmonella Infections, Animal / genetics; Salmonella Infections, Animal / metabolism; Salmonella Infections, Animal / microbiology; Salmonella enteritidis / genetics; Salmonella enteritidis / physiology; Salmonella typhimurium / genetics; Salmonella typhimurium / physiology; Spleen / microbiology; Spleen / physiology; Temperature
TL;DR: In vivo experiments using chicks demonstrated that numbers of viable S. Typhimurium or S. Enteritidis bacteria within the liver and spleen organ sites were ≥4 orders of magnitude lower than those within the ceca, indicating poor survival within these tissues or a reduced capacity to traverse the host epithelial layer and reach liver/spleen sites or both. (via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Transcriptome Analysis of Post-Hatch Breast Muscle in Legacy and Modern Broiler Chickens Reveals Enrichment of Several Regulators of Myogenic Growth

PLOS ONE, 10(3).

MeSH headings : Animals; Cattle; Chickens; Gene Expression Profiling; Humans; Mice; Muscle Development / genetics; Oviposition; Pectoralis Muscles / cytology; Pectoralis Muscles / growth & development; Pectoralis Muscles / innervation; Pectoralis Muscles / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism; Sequence Analysis, RNA; Time Factors
TL;DR: Differences in the ratios of several positive and negative myogenic growth regulators may help explain the differences underlying the enhanced growth characteristics of the modern broilers. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

The effect of hyperammonemia on myostatin and myogenic regulatory factor gene expression in broiler embryos

ANIMAL, 9(6), 992–999.

By: R. Stern n, C. Ashwell n, S. Dasarathy* & P. Mozdziak n

author keywords: broiler; hyperammonemia; myogenesis; myogenic regulatory factor; myostatin
MeSH headings : Animals; Chick Embryo; Chickens; Gene Expression Regulation; Hyperammonemia / genetics; Hyperammonemia / metabolism; Hyperammonemia / veterinary; Muscle Development / genetics; Myogenic Regulatory Factors / genetics; Myogenic Regulatory Factors / metabolism; Myogenin / genetics; Myogenin / metabolism; Pectoralis Muscles / metabolism; Poultry Diseases / genetics; Poultry Diseases / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism
TL;DR: Overall, it appears possible to inhibit myostatin expression through hyperammonemia, which is expected to have a positive effect on embryonic myogenesis and postnatal muscle growth. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Short communication: Genomic selection for hoof lesions in first-parity US Holsteins

JOURNAL OF DAIRY SCIENCE, 98(5), 3502–3507.

author keywords: genomic selection; hoof lesions; reliability
MeSH headings : Animals; Cattle; Cattle Diseases / genetics; Female; Foot Diseases / genetics; Foot Diseases / veterinary; Genomics; Hoof and Claw / metabolism; Parity; Pedigree; Phenotype; Pregnancy; Selection, Genetic; United States
TL;DR: Pedigree- and genomic-based univariate analyses were conducted to estimate the variance components and heritability of infectious and noninfectious hoof lesions of US Holsteins and confirmed low genetic correlations between hoof lesion traits and hoof type traits along with productive life and net merit. (via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Effect of broiler breeder feeding programme and feeder space change at photostimulation using maize- or wheat-based diets on broiler progeny growth performance and leg health

BRITISH POULTRY SCIENCE, 56(3), 345–360.

By: P. Eusebio-Balcazar n, E. Oviedo-Rondon n, M. Wineland n, J. Osborne n & J. Brake n

MeSH headings : Animal Feed / analysis; Animal Husbandry / methods; Animal Nutritional Physiological Phenomena / drug effects; Animals; Chickens / growth & development; Chickens / metabolism; Diet / veterinary; Female; Lower Extremity / pathology; Male; Photic Stimulation; Poultry Diseases / etiology; Random Allocation; Triticum / chemistry; Zea mays / chemistry
TL;DR: An increased probability of observing walking impairment of broiler progeny was detected when breeders were given greater feeder space at photostimulation rather than no change and fed according to the slow feeding programme using maize diets in breeders and progeny. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

A Genomic Duplication is Associated with Ectopic Eomesodermin Expression in the Embryonic Chicken Comb and Two Duplex-comb Phenotypes

PLOS GENETICS, 11(3).

By: B. Dorshorst*, M. Harun-Or-Rashid*, A. Bagherpoor*, C. Rubin*, C. Ashwell n, D. Gourichon*, M. Tixier-Boichard*, F. Hallbook*, L. Andersson*

MeSH headings : Animals; Chick Embryo; Chickens / genetics; Chickens / growth & development; Ectoderm / embryology; Ectoderm / growth & development; Ectoderm / metabolism; Embryonic Development / genetics; Gastrulation / genetics; Gene Expression Regulation, Developmental; Genes, Duplicate; Genome; Genomics; Haplotypes; Mutation; T-Box Domain Proteins / biosynthesis; T-Box Domain Proteins / genetics
TL;DR: It is shown that the two Duplex-comb alleles, V-shaped and Buttercup, are both associated with a 20 Kb tandem duplication containing several conserved putative regulatory elements located 200 Kb upstream of the eomesodermin gene (EOMES). (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Persistence of fecal shedding of Salmonella Enteritidis by experimentally infected laying hens housed in conventional or enriched cages

Poultry Science, 94(7), 1650–1656.

By: R. Gast*, R. Guraya*, D. Jones* & K. Anderson n

author keywords: Salmonella Enteritidis; chickens; fecal shedding; conventional cages; enriched colony cages
MeSH headings : Animals; Bacterial Shedding; Chickens; Feces / microbiology; Female; Georgia / epidemiology; Housing, Animal / standards; Poultry Diseases / epidemiology; Poultry Diseases / microbiology; Prevalence; Salmonella Infections, Animal / epidemiology; Salmonella Infections, Animal / microbiology; Salmonella enteritidis / isolation & purification
TL;DR: It is demonstrated that the susceptibility of hens to intestinal colonization by Salmonella Enteritidis can differ between conventional and enriched cage-based production systems, although this effect does not necessarily translate into a corresponding difference in the longer-term persistence of fecal shedding. (via Semantic Scholar)
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2015 journal article

Effects of feed form and dietary coarse ground corn on broiler live performance, body weight uniformity, relative gizzard weight, excreta nitrogen, and particle size preference behaviors

POULTRY SCIENCE, 94(7), 1549–1556.

By: Y. Xu n, C. Stark n, P. Ferket n, C. Williams n & J. Brake n

author keywords: corn particle size; mash; crumbled diet; gizzard; selective feeding behavior
MeSH headings : Animal Feed / analysis; Animal Nutritional Physiological Phenomena; Animals; Chickens / growth & development; Chickens / physiology; Diet / veterinary; Feces / chemistry; Feeding Behavior; Gizzard, Avian / drug effects; Gizzard, Avian / growth & development; Male; Nitrogen / metabolism; Organ Size / drug effects; Particle Size; Random Allocation; Weight Gain / drug effects; Zea mays / chemistry
TL;DR: It is demonstrated that pelleting and crumbling reduced the impact of CC, produced a more consistent feed intake, and reduced selective feeding, and that CC stimulated gizzard weight in a linear manner in mash diets. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Evaluation of conditioning time and temperature on gelatinized starch and vitamin retention in a pelleted swine diet

JOURNAL OF ANIMAL SCIENCE, 93(2), 615–619.

By: L. Lewis*, C. Stark*, A. Fahrenholz n, J. Bergstrom & C. Jones*

author keywords: conditioning; feed processing; gelatinization; pelleting; temperature
MeSH headings : Animal Feed / analysis; Animals; Food Handling / methods; Food, Formulated; Gelatin; Hot Temperature; Soybeans; Starch / chemistry; Swine; Time Factors; Vitamins / chemistry; Zea mays
TL;DR: Both increasing conditioning temperature and time effect percentage gelatinized starch, but not to the extent of forcing the diet through a pelleting die. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Effects of pelleting conditioner retention time on nursery pig growth performance

JOURNAL OF ANIMAL SCIENCE, 93(3), 1098–1102.

By: L. Lewis*, C. Stark*, A. Fahrenholz n, M. Goncalves*, J. DeRouchey* & C. Jones*

author keywords: conditioning; growth; pellet; pig; processing
MeSH headings : Animal Feed / analysis; Animal Nutritional Physiological Phenomena / physiology; Animals; Animals, Newborn / growth & development; Animals, Newborn / physiology; Diet / veterinary; Female; Food Handling / methods; Housing, Animal; Male; Particle Size; Physical Conditioning, Animal; Swine / growth & development; Swine / physiology; Time Factors; Weaning; Weight Gain / physiology
TL;DR: It was not surprising that pigs fed mash diets had greater ADG and ADFI than those fed pelleted diets, but the expected improvement in G:F from pelleting was observed but lost when diets were reground to near original mash particle size, which may indicate that diet form from the actual pellets process impactsG:F more than conditioner retention time. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Incubation temperature profiles affect broiler feathering

JOURNAL OF APPLIED POULTRY RESEARCH, 24(1), 49–57.

By: J. Scott n, M. Da Costa n & E. Oviedo-Rondon n

author keywords: feather development; incubation; feed restriction; breeder; litter type; broilers
TL;DR: It was concluded that incubation temperature affected feathering development in both experiments, especially in the breast, and this effect may be stronger in progeny from breeders restricted under SAD programs. (via Semantic Scholar)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Evaluation of different water flow rates of nipple drinkers on broiler productivity

JOURNAL OF APPLIED POULTRY RESEARCH, 24(1), 58–65.

By: C. Quilumba*, E. Quijia*, A. Gernat*, G. Murillo* & J. Grimes n

author keywords: broiler; nipple; water flow; litter; water utilization
TL;DR: As birds become heavier, they attempt to utilize larger amounts of water from ND with greater WFR without any beneficial effect on bird performance, and as WFR increase, litter moisture under the ND will initially increase but then decrease as the birds age. (via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Effect of dietary coarsely ground corn on broiler live performance, gastrointestinal tract development, apparent ileal digestibility of energy and nitrogen, and digesta particle size distribution and retention time

POULTRY SCIENCE, 94(1), 53–60.

By: Y. Xu n, C. Stark n, P. Ferket n, C. Williams n, W. Pacheco n & J. Brake n

author keywords: coarse corn; gizzard; gastrointestinal tract development; digestibility; digesta retention time
MeSH headings : Animal Feed / analysis; Animal Nutritional Physiological Phenomena; Animals; Chickens / growth & development; Chickens / physiology; Diet / veterinary; Digestion / physiology; Energy Metabolism; Gastrointestinal Tract / drug effects; Gastrointestinal Tract / growth & development; Ileum / metabolism; Male; Nitrogen / metabolism; Particle Size; Random Allocation; Time Factors; Zea mays / chemistry
TL;DR: In conclusion, birds fed pelleted and screened diets that contained 25 and 50% CC exhibited increased BW, improved FCR, and increased AID of energy and N, which was probably due to enhanced gizzard development and greater digesta retention time. (via Semantic Scholar)
UN Sustainable Development Goal Categories
7. Affordable and Clean Energy (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

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