Biochemistry - 2007

Bharadwaj, A. G., Rector, K., & Simpson, M. A. (2007). Inducible Hyaluronan Production Reveals Differential Effects on Prostate Tumor Cell Growth and Tumor Angiogenesis. Journal of Biological Chemistry, 282(28), 20561–20572. https://doi.org/10.1074/jbc.M702964200

Kovar, J. L., Simpson, M. A., Schutz-Geschwender, A., & Olive, D. M. (2007). A systematic approach to the development of fluorescent contrast agents for optical imaging of mouse cancer models. Analytical Biochemistry, 367(1), 1–12. https://doi.org/10.1016/j.ab.2007.04.011

Kovar, J. L., Volcheck, W. M., Chen, J., & Simpson, M. A. (2007). Purification method directly influences effectiveness of an epidermal growth factor-coupled targeting agent for noninvasive tumor detection in mice. Analytical Biochemistry, 361(1), 47–54. https://doi.org/10.1016/j.ab.2006.11.021

Morrow, A. L., Williams, K., Sand, A., Boanca, G., & Barycki, J. J. (2007). Characterization of Helicobacter pyloriγ-Glutamyltranspeptidase Reveals the Molecular Basis for Substrate Specificity and a Critical Role for the Tyrosine 433-Containing Loop in Catalysis†,‡. Biochemistry, 46(46), 13407–13414. https://doi.org/10.1021/bi701599e

Easley, K. E., Sommer, B. J., Boanca, G., Barycki, J. J., & Simpson, M. A. (2007). Characterization of Human UDP-Glucose Dehydrogenase Reveals Critical Catalytic Roles for Lysine 220 and Aspartate 280†. Biochemistry, 46(2), 369–378. https://doi.org/10.1021/bi061537d

Longo, A., Guanga, G. P., & Rose, R. B. (2007). Structural Basis for Induced Fit Mechanisms in DNA Recognition by the Pdx1 Homeodomain†,‡. Biochemistry, 46(11), 2948–2957. https://doi.org/10.1021/bi060969l

Ortega-Villasante, C., Hernandez, L. E., Rellan-Alvarez, R., Del Campo, F. F., & Carpena-Ruiz, R. O. (2007). Rapid alteration of cellular redox homeostasis upon exposure to cadmium and mercury in alfalfa seedlings. New Phytologist, 176(1), 96–107. https://doi.org/10.1111/j.1469-8137.2007.02162.x

Kojetin, D. J., McLaughlin, P. D., Thompson, R. J., Venters, R. A., Rance, M., & Cavanagh, J. (2007). NMR assignment of the N-terminal repeat domain of Bacillus subtilis ClpC. Biomolecular NMR Assignments, 1(2), 163–165. https://doi.org/10.1007/s12104-007-9046-8

Strauch, M. A., Bobay, B. G., Cavanagh, J., Yao, F., Wilson, A., & Le Breton, Y. (2007). Abh and AbrB control of Bacillus subtilis antimicrobial gene expression. Journal of Bacteriology, 189(21), 7720–7732. https://doi.org/10.1128/JB.01081-07

Kordys, D. R., Bobay, B. G., Thompson, R. J., Venters, R. A., & Cavanagh, J. (2007). Peptide binding proclivities of calcium loaded calbindin-D28k. FEBS Letters, 581(24), 4778–4782. https://doi.org/10.1016/j.febslet.2007.09.004

Wang, G. B., Hernandez, R., Weninger, K., & Brown, D. T. (2007). Infection of cells by Sindbis virus at low temperature. Virology, 362(2), 461–467. https://doi.org/10.1016/j.virol.2006.12.036

Arguello-Astorga, G., Ascencio-Ibanez, J. T., Dallas, M. B., Orozco, B. M., & Hanley-Bowdoin, L. (2007). High-frequency reversion of geminivirus replication protein mutants during infection. Journal of Virology, 81(20), 11005–11015. https://doi.org/10.1128/JVI.00925-07

Huggins, W., Shapkina, T., & Wollenzien, P. (2007). Conformational energy and structure in canonical and noncanonical forms of tRNA determined by temperature analysis of the rate of s(4)U8-C13 photocrosslinking. RNA, 13(11), 2000–2011. https://doi.org/10.1261/rna.656907

Buhrman, G., Wink, G., & Mattos, C. (2007). Transformation efficiency of RasQ61 mutants linked to structural features of the switch regions in the presence of Raf. Structure (Cambridge, Mass. : 2001), 15(12), 1618–1629. https://doi.org/10.1016/j.str.2007.10.011

Soderblom, E. J., Bobay, B. G., Cavanagh, J., & Goshe, M. B. (2007). Tandem mass spectrometry acquisition approaches to enhance identification of protein-protein interactions using low-energy collision-induced dissociative chemical crosslinking reagents. Rapid Communications in Mass Spectrometry, 21(21), 3395–3408. https://doi.org/10.1002/rcm.3213

Whitehurst, C. B., Soderblom, E. J., West, M. L., Hernandez, R., Goshe, M. B., & Brown, D. T. (2007). Location and role of free cysteinyl residues in the Sindbis virus E1 and E2 glycoproteins. Journal of Virology, 81(12), 6231–6240. https://doi.org/10.1128/JVI.02859-06

Gagnon, K., Zhang, X. X., & Maxwell, E. S. (2007). [Review of In vitro reconstitution and affinity purification of catalytically active archaeal box C/D sRNP complexes]. RNA modification, 425, 263–282. https://doi.org/10.1016/s0076-6879(07)25012-8

McLaughlin, P. D., Bobay, B. G., Regel, E. J., Thompson, R. J., Hoch, J. A., & Cavanagh, J. (2007). Predominantly buried residues in the response regulator Spo0F influence specific sensor kinase recognition. FEBS Letters, 581(7), 1425–1429. https://doi.org/10.1016/j.febslet.2007.02.061

Costanzo, L. D., Moulin, M., Haertlein, M., Meilleur, F., & Christianson, D. W. (2007). Expression, purification, assay, and crystal structure of perdeuterated human arginase I. Archives of Biochemistry and Biophysics, 465(1), 82–89. https://doi.org/10.1016/j.abb.2007.04.036

Shafiee-Kermani, F., Han, S. O., & Miller, W. L. (2007). Chronic gonadotropin-releasing hormone inhibits activin induction of the ovine follicle-stimulating hormone beta-subunit: Involvement of 3 ',5 '-cyclic adenosine monophosphate response element binding protein and nitric oxide synthase type I. Endocrinology, 148(7), 3346–3355. https://doi.org/10.1210/en.2006-1740

Appel, C. D., & Maxwell, E. S. (2007). Structural features of the guide : target RNA duplex required for archaeal box C/D sRNA-guided nucleotide 2 '-O-methylation. RNA, 13(6), 899–911. https://doi.org/10.1261/rna.517307

Longo, A., Guanga, G. P., & Rose, R. (2007). Structural basis for induced fit mechanisms in DNA recognition by the Pdx1 homeodomain. Biochemistry, 46(11), 2948–2957. https://doi.org/10.1021/bi0609691

Su, P., Shafiee-Kermani, F., Gore, A. J., Jia, J. J., Wu, J. C., & Miller, W. L. (2007). Expression and regulation of the beta-subunit of ovine follicle-stimulating hormone relies heavily on a promoter sequence likely to bind smad-associated proteins. Endocrinology, 148(9), 4500–4508. https://doi.org/10.1210/en.2006-1635

Mitra, S. K., Gantt, J. A., Ruby, J. F., Clouse, S. D., & Goshe, M. B. (2007). Membrane proteomic analysis of Arabidopsis thaliana using alternative solubilization techniques. Journal of Proteome Research, 6(5), 1933–1950. https://doi.org/10.1021/pr060525b

Ke, C., Humeniuk, M., S-Gracz, H., & Marszalek, P. E. (2007). Direct measurements of base stacking interactions in DNA by single-molecule atomic-force spectroscopy. Physical Review Letters, 99(1). https://doi.org/10.1103/physrevlett.99.018302

Ascencio-Ibanez, J. T., & Settlage, S. B. (2007). DNA abrasion onto plants is an effective method for geminivirus infection and virus-induced gene silencing. Journal of Virological Methods, 142(1-2), 198–203. https://doi.org/10.1016/j.jviromet.2007.01.031

Hu, B., Pillai-Nair, N., & Hemenway, C. (2007). Long-distance RNA-RNA interactions between terminal elements and the same subset of internal elements on the potato virus X genome mediate minus- and plus-strand RNA synthesis. RNA, 13(2), 267–280. https://doi.org/10.1261/rna.243607