Biochemistry - 2017

Rellan-Alvarez, R. (2017). The Role of Phospholipid Metabolism in Maize Adaptation to Low Phosphorus and Cold Conditions. Talk presented at the Gordon Research Conference Plant Lipids: Structure, Metabolism & Function, Galveston, TX.

Rellan-Alvarez, R. (2017). Identification of phospholipid metabolic patterns involved in maize adaptation to highland conditions. Seminar presented at the Fiehn & Ross-Ibarra labs, University of California-Davis Genome Center, Davis, California.

Rellan-Alvarez, R. (2017). Identification of phospholipid metabolic patterns involved in maize adaptation to low phosphorus and cold conditions. Seminar presented at the David Lowry Lab, Michigan State University, Lansing, Michigan.

Rellan-Alvarez, R. (2017). Convergent phospholipid metabolism in highland adapted maize? Seminar presented at the Donald Danforth Plant Science Center Scientific Retreat, Olivette, Missouri.

Rellan-Alvarez, R. (2017). Towards and understanding of maize adaptation to highlands using a combination of lipidomics and quantitative and population genetics. Presented at the Matthew Hufford lab, Genetics and Genomics Graduate Group, Iowa State University, Ames, IA.

Bucksch, A., Atta-Boateng, A., Azihou, A. F., Battogtokh, D., Baumgartner, A., Binder, B. M., … Chitwood, D. H. (2017). Morphological Plant Modeling: Unleashing Geometric and Topological Potential within the Plant Sciences. Frontiers in Plant Science, 8. https://doi.org/10.3389/fpls.2017.00900

Ramírez-Flores, M. R., Rellán-Álvarez, R., Wozniak, B., Gebreselassie, M.-N., Jakobsen, I., Olalde-Portugal, V., … Sawers, R. J. H. (2017). Co-ordinated Changes in the Accumulation of Metal Ions in Maize (Zea mays ssp. mays L.) in Response to Inoculation with the Arbuscular Mycorrhizal Fungus Funneliformis mosseae. Plant and Cell Physiology, 58(10), 1689–1699. https://doi.org/10.1093/pcp/pcx100

Golden, E., Yu, L.-J., Meilleur, F., Blakeley, M. P., Duff, A. P., Karton, A., & Vrielink, A. (2017). An extended N-H bond, driven by a conserved second-order interaction, orients the flavin N5 orbital in cholesterol oxidase. Scientific Reports, 7(1), 40517, https://doi.org/10.1038/srep40517

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase. Angewandte Chemie, 129(3), 785–788. https://doi.org/10.1002/ange.201610502

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Inside Cover: Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase (Angew. Chem. Int. Ed. 3/2017). Angewandte Chemie International Edition, 56(3), 658–658. https://doi.org/10.1002/anie.201611987

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Innentitelbild: Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase (Angew. Chem. 3/2017). Angewandte Chemie. https://doi.org/10.1002/ange.201611987

Mora-Macías, J., Ojeda-Rivera, J. O., Gutiérrez-Alanís, D., Yong-Villalobos, L., Oropeza-Aburto, A., Raya-González, J., … al. (2017). Malate-dependent Fe accumulation is a critical checkpoint in the root developmental response to low phosphate. Proceedings of the National Academy of Sciences, 114(17), E3563–E3572. https://doi.org/10.1073/pnas.1701952114

Desai, J. S., Sartor, R. C., Lawas, L. M., Jagadish, S. V. K., & Doherty, C. J. (2017). Improving Gene Regulatory Network Inference by Incorporating Rates of Transcriptional Changes. Scientific Reports. https://doi.org/10.1038/s41598-017-17143-1

Friesner, J., Assmann, S. M., Bastow, R., Bailey-Serres, J., Beynon, J., Brendel, V., … Grotewold, E. (2017). The Next Generation of Training for Arabidopsis Researchers: Bioinformatics and Quantitative Biology. Plant Physiol., 175(4), 1499–1509. https://doi.org/10.1104/pp.17.01490

Imkampe, J., Halter, T., Huang, S. H., Schulze, S., Mazzotta, S., Schmidt, N., … Wang, X. F. (2017). The arabidopsis leucine-rich repeat receptor kinase BIR3 negatively regulates BAK1 receptor complex formation and stabilizes BAK1. Plant Cell, 29(9), 2285–2303. https://doi.org/10.1105/tpc.17.00376

Kyallo, M., Ateka, E. M., Sseruwagi, P., Ascencio-Ibanez, J. T., Ssemakula, M. O., Skilton, R., & Ndunguru, J. (2017). Infectivity of Deinbollia mosaic virus, a novel weed-infecting begomovirus in East Africa. Archives of Virology, 162(11), 3439–3445. https://doi.org/10.1007/s00705-017-3495-x

Hiromoto, T., Meilleur, F., Shimizu, R., Shibazaki, C., Adachi, M., Tamada, T., & Kuroki, R. (2017). Neutron structure of the T26H mutant of T4 phage lysozyme provides insight into the catalytic activity of the mutant enzyme and how it differs from that of wild type. Protein Science, 26(10), 1953–1963. https://doi.org/10.1002/pro.3230

Li, L., Shukla, S., Meilleur, F., Standaert, R. F., Pierce, J., Myles, D. A. A., & Cuneo, M. J. (2017). Neutron crystallographic studies of T4 lysozyme at cryogenic temperature. Protein Science, 26(10), 2098–2104. https://doi.org/10.1002/pro.3231

Hauenstein, A. V., Xu, G. Z., Kabaleeswaran, V., & Wu, H. (2017). Evidence for M1-linked polyubiquitin-mediated conformational change in NEMO. Journal of Molecular Biology, 429(24), 3793–3800. https://doi.org/10.1016/j.jmb.2017.10.026

Barycki, J. J. (2017). Covering their bases: The phosphobase methylation pathway in plants. Journal of Biological Chemistry, 292(52), 21703–21704. https://doi.org/10.1074/jbc.h117.000712

Westmoreland, L. S. H., Niemuth, J. N., Gracz, H. S., & Stoskopf, M. K. (2017). Altered acrylic acid concentrations in hard and soft corals exposed to deteriorating water conditions. Facets, 2, 531–544. https://doi.org/10.1139/facets-2016-0064

Reyes, M. I., Flores-Vergara, M. A., Guerra-Peraza, O., Rajabu, C., Desai, J., Hiromoto-Ruiz, Y. H., … Robertson, D. (2017). A VIGS screen identifies immunity in the Arabidopsis Pla-1 accession to viruses in two different genera of the Geminiviridae. Plant Journal, 92(5), 796–807. https://doi.org/10.1111/tpj.13716

Enriquez, P. (2017). GM-food regulations: Engage the public. https://doi.org/10.1038/548031b

Mukherjee, A., Wheaton, G. H., Counts, J. A., Ijeomah, B., Desai, J., & Kelly, R. M. (2017). VapC toxins drive cellular dormancy under uranium stress for the extreme thermoacidophile Metallosphaera prunae. Environmental Microbiology, 19(7), 2831–2842. https://doi.org/10.1111/1462-2920.13808

Khan, M. A., Walden, W. E., Theil, E. C., & Goss, D. J. (2017). Thermodynamic and kinetic analyses of iron response element (IRE)-mRNA binding to iron regulatory protein, IRP1. Scientific Reports, 7. https://doi.org/10.1038/s41598-017-09093-5

Bodenheimer, A. M., O'Dell, W. B., Stanley, C. B., & Meilleur, F. (2017). Structural studies of  Neurospora crassa  LPMO9D and redox partner CDHIIA using neutron crystallography and small-angle scattering. Carbohydrate Research, 3, 200–204. https://doi.org/10.1016/j.carres.2017.03.001

Gross, M. A., Jensen, J. L., Gracz, H. S., Dancer, J., & Keener, K. M. (2017). Evaluation of physical and chemical properties and their interactions in fat, oil, and grease (FOG) deposits. Water Research, 123, 173–182. https://doi.org/10.1016/j.watres.2017.06.072

Lu, H., Yuan, W. Q., Cheng, J., Rose, R., Classen, J. J., & Simmons, O. D. (2017). Modeling the growth of archaeon halobacterium halobium affected by temperature and light. Applied Biochemistry and Biotechnology, 181(3), 1080–1095. https://doi.org/10.1007/s12010-016-2270-x

O'Dell, W. B., Swartz, P. D., Weiss, K. L., & Meilleur, F. (2017). Crystallization of a fungal lytic polysaccharide monooxygenase expressed from glycoengineered Pichia pastoris for X-ray and neutron diffraction. Acta Crystallographica Section F Structural Biology Communications, 73(2), 70–78. https://doi.org/10.1107/s2053230x16020318

Bender, K. W., Blackburn, R. K., Monaghan, J., Derbyshire, P., Menke, F. L. H., Zipfel, C., … Huber, S. C. (2017). Autophosphorylation-based calcium (Ca2(+)) sensitivity priming and Ca2(+)/Calmodulin inhibition of Arabidopsis thaliana Ca2(+)-dependent protein kinase 28 (CPK28). Journal of Biological Chemistry, 292(10), 3988–4002. https://doi.org/10.1074/jbc.m116.763243

Blackburn, K., Bustamante-Marin, X., Yin, W. N., Goshe, M. B., & Ostrowski, L. E. (2017). Quantitative proteomic analysis of human airway cilia identifies previously uncharacterized proteins of high abundance. Journal of Proteome Research, 16(4), 1579–1592. https://doi.org/10.1021/acs.jproteome.6b00972

Li, Z. J., Chakraborty, S., & Xu, G. Z. (2017). Differential CLE peptide perception by plant receptors implicated from structural and functional analyses of TDIF-TDR interactions. PLoS One, 12(4). https://doi.org/10.1371/journal.pone.0175317

Shani, E., Salehin, M., Zhang, Y. Q., Sanchez, S. E., doherty, Wang, R. H., … Estelle, M. (2017). Plant stress tolerance requires auxin-sensitive Aux/IAA transcriptional repressors. Current Biology, 27(3), 437–444. https://doi.org/10.1016/j.cub.2016.12.016

O'Dell, W. B., Agarwal, P. K., & Meilleur, F. (2017). Oxygen Activation at the Active Site of a Fungal Lytic Polysaccharide Monooxygenase. Angewandte Chemie International Edition, 56(3), 767–770. https://doi.org/10.1002/anie.201610502

Mohiti-Asli, M., Saha, S., Murphy, S. V., Gracz, H., Pourdeyhimi, B., Atala, A., & Loboa, E. G. (2017). Ibuprofen loaded pla nanofibrous scaffolds increase proliferation of human skin cells in vitro and promote healing of full thickness incision wounds in vivo. Journal of Biomedical Materials Research. Part B, Applied Biomaterials, 105(2), 327–339. https://doi.org/10.1002/jbm.b.33520

Draughn, G. L., Allen, C. L., Routh, P. A., Stone, M. R., Kirker, K. R., Boegli, A., … Cavanagh, J. (2017). Evaluation of a 2-aminoimidazole variant as adjuvant treatment for dermal bacterial infections. Drug Design Development and Therapy, 11, 153–162.