Biochemistry

College of Agriculture and Life Sciences

Works Published in 2004

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Displaying works 1 - 20 of 28 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2004 journal article

Conformational changes in Sindbis virions resulting from exposure to low pH and interactions with cells suggest that cell penetration may occur at the cell surface in the absence of membrane fusion

Virology, 324(2), 373–386.

By: A. Paredes*, D. Ferreira n, M. Horton n, A. Saad*, H. Tsuruta*, R. Johnston*, W. Klimstra*, K. Ryman* ...

author keywords: Sindbis virus; electron cryo-microscopy; pH conditions; structure; infection; membrane fusion
MeSH headings : Animals; Cell Fusion; Cell Line; Cricetinae; Cryoelectron Microscopy; Hydrogen-Ion Concentration; Membrane Fusion; Microscopy, Electron; Protein Conformation; Sindbis Virus / chemistry; Sindbis Virus / physiology; Sindbis Virus / ultrastructure; Viral Envelope Proteins / chemistry; Viral Envelope Proteins / ultrastructure; Virion / chemistry; Virion / physiology; Virus Replication
Source: Crossref
Added: October 9, 2021

2004 journal article

Rapid preparative purification of West Nile and Sindbis virus PCR products utilizing a microbore anion-exchange column

Journal of Virological Methods, 120(2), 141–149.

By: R. Hernandez n, S. Nelson n, J. Salm n, D. Brown n & A. Alpert

author keywords: Sindbis virus; West Nile virus; PCR products; preparative anion-exchange HPLC purification
MeSH headings : Anions / analysis; Anions / isolation & purification; Chromatography, High Pressure Liquid; DNA, Viral / analysis; DNA, Viral / isolation & purification; Polymerase Chain Reaction / methods; Sindbis Virus / genetics; Sindbis Virus / isolation & purification; Time Factors; Virology / methods; West Nile virus / genetics; West Nile virus / isolation & purification
Source: Crossref
Added: October 9, 2021

2004 journal article

Melanoma chondroitin sulfate proteoglycan enhances FAK and ERK activation by distinct mechanisms

The Journal of Cell Biology, 165(6), 881–891.

By: J. Yang*, M. Price*, C. Neudauer*, C. Wilson*, S. Ferrone*, H. Xia*, J. Iida*, M. Simpson*, J. McCarthy*

author keywords: melanoma chondroitin sulfate proteoglycan; FAK; integrin; ERK1/2; cell spreading
MeSH headings : Amino Acid Sequence; Cell Line, Tumor; Chondroitin Sulfate Proteoglycans / chemistry; Chondroitin Sulfate Proteoglycans / genetics; Chondroitin Sulfate Proteoglycans / pharmacology; Enzyme Activation / drug effects; Focal Adhesion Kinase 1; Focal Adhesion Protein-Tyrosine Kinases; Humans; Melanoma; Membrane Proteins / chemistry; Membrane Proteins / genetics; Membrane Proteins / pharmacology; Mitogen-Activated Protein Kinase 1 / metabolism; Mitogen-Activated Protein Kinase 3; Mitogen-Activated Protein Kinases / metabolism; Molecular Sequence Data; Protein-Tyrosine Kinases / metabolism; Sequence Alignment; Sequence Homology, Amino Acid
Source: Crossref
Added: January 30, 2021

2004 journal article

Global Analysis of the Membrane Subproteome of Pseudomonas aeruginosaUsing Liquid Chromatography-Tandem Mass Spectrometry

Journal of Proteome Research, 3(3), 434–444.

By: J. Blonder*, M. Goshe*, W. Xiao*, D. Camp*, M. Wingerd*, R. Davis*, R. Smith*

author keywords: proteome; membrane proteins; low abundance; LC-MS/MS; affinity labeling
MeSH headings : Affinity Labels / chemistry; Amino Acid Sequence; Chromatography, Liquid; Databases, Protein; Mass Spectrometry; Membranes / metabolism; Molecular Sequence Data; Multiprotein Complexes / metabolism; Proteome; Pseudomonas aeruginosa / metabolism
Source: Crossref
Added: November 22, 2020

2004 journal article

Digital Imaging Workflow in Modern Microscopy

Microscopy and Microanalysis, 10(S02), 1256–1257.

By: J. Mackenzie n

Source: Crossref
Added: November 22, 2020

2004 journal article

Characterization of Human UDP-glucose Dehydrogenase

Journal of Biological Chemistry, 279(22), 23590–23596.

By: B. Sommer*, J. Barycki* & M. Simpson*

MeSH headings : Binding Sites; Catalytic Domain / genetics; Cysteine; Humans; Lysine; Oxidation-Reduction; Protein Conformation; Streptococcus pyogenes; Structure-Activity Relationship; Uridine Diphosphate Glucose Dehydrogenase / chemistry; Uridine Diphosphate Glucose Dehydrogenase / genetics; Uridine Diphosphate Glucose Dehydrogenase / metabolism
Source: Crossref
Added: August 28, 2020

2004 journal article

Mutagenicity in Salmonella of halonitromethanes: a recently recognized class of disinfection by-products in drinking water

Mutation Research/Genetic Toxicology and Environmental Mutagenesis, 562(1-2), 39–65.

By: B. Kundu*, S. Richardson*, P. Swartz*, P. Matthews*, A. Richard* & D. DeMarini*

MeSH headings : Biotransformation; Disinfectants / chemistry; Disinfectants / pharmacology; Methane / analogs & derivatives; Methane / chemistry; Methane / pharmacology; Mutagenicity Tests; Nitroparaffins / chemistry; Nitroparaffins / pharmacology; Salmonella / genetics; Water Supply / analysis
Source: Crossref
Added: August 28, 2020

2004 journal article

Comparative mutagenicity of halomethanes and halonitromethanes in Salmonella TA100: structure–activity analysis and mutation spectra

Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis, 554(1-2), 335–350.

By: B. Kundu*, S. Richardson*, C. Granville*, D. Shaughnessy*, N. Hanley*, P. Swartz*, A. Richard*, D. DeMarini*

author keywords: halonitromethanes; halomethanes; mutagenicity; Salmonella; drinking water; mutation spectra
MeSH headings : Biotransformation; Methane / analogs & derivatives; Methane / pharmacokinetics; Methane / toxicity; Mutagens / pharmacokinetics; Mutagens / toxicity; Mutation; Salmonella / drug effects; Salmonella / genetics; Structure-Activity Relationship
Source: Crossref
Added: August 28, 2020

2004 journal article

Status of systems biology - does it have a future?

Drug Discovery Today: BIOSILICO, 2(5), 171–174.

By: S. Naylor* & J. Cavanagh n

Source: Crossref
Added: August 28, 2020

2004 journal article

The orphan nuclear receptor LRH-1 activates the ABCG5/ABCG8 intergenic promoter

Journal of Lipid Research, 45(7), 1197–1206.

By: L. Freeman*, A. Kennedy*, J. Wu*, S. Bark*, A. Remaley*, S. Santamarina-Fojo*, H. Brewer*

author keywords: ATP binding cassette transporter; CPF; liver receptor homolog-1; FTF; FXR; SHP; sitosterolemia cholesterol; bile acids
MeSH headings : ATP Binding Cassette Transporter, Subfamily G, Member 5; ATP Binding Cassette Transporter, Subfamily G, Member 8; ATP-Binding Cassette Transporters / genetics; Bile Acids and Salts / metabolism; Binding Sites / genetics; Binding Sites / physiology; Cell Line, Tumor; DNA-Binding Proteins / physiology; Deoxycholic Acid / pharmacology; Humans; Lipoproteins / genetics; Promoter Regions, Genetic / drug effects; Promoter Regions, Genetic / genetics; Receptors, Cytoplasmic and Nuclear / physiology; Sterols / metabolism; Transcription Factors / physiology; Transcriptional Activation
Sources: Crossref, ORCID
Added: January 20, 2020

2004 journal article

Structural Stability and Dynamics of Hydrogenated and Perdeuterated Cytochrome P450cam (CYP101)†

Biochemistry, 43(27), 8744–8753.

By: F. Meilleur*, J. Contzen*, D. Myles* & C. Jung*

MeSH headings : Binding Sites; Camphor 5-Monooxygenase / chemistry; Camphor 5-Monooxygenase / genetics; Camphor 5-Monooxygenase / metabolism; Carbon Monoxide / metabolism; Deuterium / chemistry; Enzyme Stability; Hydrogen / chemistry; Kinetics; Phase Transition; Photolysis; Point Mutation / genetics; Protein Denaturation; Protein Folding; Protein Structure, Secondary; Pseudomonas putida / enzymology; Pseudomonas putida / genetics; Spectroscopy, Fourier Transform Infrared; Temperature
Source: ORCID
Added: January 6, 2020

2004 journal article

Rapid, efficient isolation of murine gonadotropes and their use in revealing control of follicle-stimulating hormone by paracrine pituitary factors

ENDOCRINOLOGY, 145(12), 5832–5839.

MeSH headings : Activins / pharmacology; Animals; Cell Separation / methods; Follicle Stimulating Hormone / metabolism; Follistatin / pharmacology; Luteinizing Hormone / metabolism; Mice; Mice, Inbred Strains; Mice, Transgenic; Paracrine Communication / drug effects; Paracrine Communication / physiology; Pituitary Gland / cytology; Pituitary Gland / metabolism
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Pattern of 4-thiouridine-induced cross-linking in 16S ribosomal RNA in the Escherichia coli 30S subunit

BIOCHEMISTRY, 43(28), 8923–8934.

MeSH headings : Base Sequence; Escherichia coli / genetics; Molecular Sequence Data; Molecular Structure; Photochemistry; RNA, Ribosomal, 16S / chemistry; Ribosomes / chemistry; Sequence Analysis, RNA; Thiouridine / chemistry; Ultraviolet Rays
Source: Web Of Science
Added: August 6, 2018

2004 journal article

H-1, N-15, and C-13 chemical shift assignments of the Vibrio harveyi histidine phosphotransferase protein LuxU

JOURNAL OF BIOMOLECULAR NMR, 29(4), 551–552.

MeSH headings : Bacterial Proteins / chemistry; Carbon Isotopes; Hydrogen; Magnetic Resonance Spectroscopy; Nitrogen Isotopes; Phosphoproteins / chemistry; Vibrio / chemistry; Vibrio / enzymology
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Evaluation of the DNA Binding Tendencies of the Transition State Regulator AbrB†

Biochemistry, 43(51), 16106–16118.

By: B. Bobay n, L. Benson n, S. Naylor n, B. Feeney n, A. Clark n, M. Goshe n, M. Strauch n, R. Thompson n, J. Cavanagh n

MeSH headings : Bacillus subtilis / metabolism; Circular Dichroism; DNA / chemistry; DNA / metabolism; Kinetics; Protein Binding / physiology; Spectrometry, Mass, Electrospray Ionization; Transcription Factors / chemistry; Transcription Factors / metabolism
Sources: Web Of Science, Crossref
Added: August 6, 2018

2004 journal article

Conformational changes in Sindbis virions resulting from exposure to low pH and interactions with cells suggest that cell penetration may occur at the cell surface in the absence of membrane fusion

Virology, 324(2), 373–386.

By: A. Paredes, D. Ferreira, M. Horton, A. Saad, H. Tsuruta, R. Johnston, W. Klimstra, K. Ryman ...

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Rapid preparative purification of West Nile and Sindbis virus PCR products utilizing a microbore anion-exchange column

Journal of Virological Methods, 120(2), 141–149.

By: R. Hernandez, S. Nelson, J. Salm, D. Brown & A. Alpert

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Sequential 2 '-O-methylation of archaeal pre-tRNA(Trp) nucleotides is guided by the intron-encoded but trans-acting box c/D ribonucleoprotein of pre-tRNA

JOURNAL OF BIOLOGICAL CHEMISTRY, 279(46), 47661–47671.

MeSH headings : Archaeal Proteins / genetics; Archaeal Proteins / metabolism; Gene Expression Regulation, Archaeal; Haloferax volcanii / genetics; Haloferax volcanii / metabolism; Introns; Methylation; Mutagenesis, Site-Directed; Nucleic Acid Conformation; RNA Precursors / chemistry; RNA Precursors / metabolism; RNA, Archaeal / chemistry; RNA, Archaeal / metabolism; RNA, Transfer, Trp / chemistry; RNA, Transfer, Trp / metabolism; Ribonucleoproteins, Small Nuclear / chemistry; Ribonucleoproteins, Small Nuclear / genetics; Ribonucleoproteins, Small Nuclear / metabolism
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Efficiency and pattern of UV pulse laser-induced RNA-RNA cross-linking in the ribosome

NUCLEIC ACIDS RESEARCH, 32(4), 1518–1526.

MeSH headings : Base Sequence; Escherichia coli / genetics; Lasers; Molecular Sequence Data; Photons; Purine Nucleosides / radiation effects; RNA, Ribosomal, 16S / chemistry; RNA, Ribosomal, 16S / radiation effects; Ribosomes / radiation effects; Ultraviolet Rays
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Controlling PVA hydrogels with gamma-cyclodextrin

MACROMOLECULES, 37(25), 9620–9625.

Source: Web Of Science
Added: August 6, 2018