Biochemistry

College of Agriculture and Life Sciences

Works Published in 2015

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Displaying works 1 - 20 of 30 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2015 conference paper

Roundtable Organization Emerging technologies for root systems scale imaging and phenotyping

Presented at the Rhizosphere 4: Stretching the Interface of Life - Congress on rhizosphere hosted by the Centre for Soil Ecology, Maastricht, The Netherlands.

Event: Rhizosphere 4: Stretching the Interface of Life - Congress on rhizosphere hosted by the Centre for Soil Ecology at Maastricht, The Netherlands on June 21-25, 2015

Source: NC State University Libraries
Added: January 13, 2022

2015 speech

Multidimensional mapping of root responses to soil environmental cues using a luminescence-based imaging system

Seminar presented at the Leibniz Institute of Plant Genetics and Crop Plant Research, Gatersleben, Germany.

Event: Leibniz Institute of Plant Genetics and Crop Plant Research at Gatersleben, Germany

Source: NC State University Libraries
Added: January 13, 2022

2015 conference paper

Towards a root system level understanding of how plants adjust root function and shape and integrate heterogeneous environmental cues

Keynote talk presented at the XVI National Congress of Biochemistry and Plant Molecular Biology, IX Simposium, Mexico-USA Queretaro, México.

Event: XVI National Congress of Biochemistry and Plant Molecular Biology, IX Simposium at Mexico-USA Queretaro, México

Source: NC State University Libraries
Added: January 13, 2022

2015 journal article

Genome-wide identification of CCA1 targets uncovers an expanded clock network in Arabidopsis.

Proceedings of the National Academy of Sciences of the United States of America.

author keywords: genome-wide; circadian clock; clock-controlled outputs; transcriptional regulation
MeSH headings : Arabidopsis / genetics; Arabidopsis Proteins / genetics; Genome, Plant; Transcription Factors / genetics; Transcriptome
Source: ORCID
Added: January 25, 2021

2015 journal article

Regulation of the Arabidopsis CBF regulon by a complex low-temperature regulatory network.

The Plant Journal : for Cell and Molecular Biology.

author keywords: CBF regulatory pathway; low-temperature regulatory network; freezing tolerance; Arabidopsis thaliana
MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cold Temperature; Gene Expression Regulation, Plant; Regulon / genetics
Source: ORCID
Added: January 25, 2021

2015 journal article

Methylation-independent repression of Dnmt3b contributes to oncogenic activity of Dnmt3a in mouse MYC-induced T-cell lymphomagenesis

Oncogene, 34(43), 5436–5446.

By: S. Haney*, R. Hlady*, J. Opavska*, D. Klinkebiel*, S. Pirruccello*, S. Dutta*, K. Datta*, M. Simpson*, L. Wu*, R. Opavsky*

MeSH headings : Animals; Carcinogenesis / genetics; Cell Proliferation / genetics; DNA / genetics; DNA (Cytosine-5-)-Methyltransferases / genetics; DNA Methylation / genetics; DNA Methyltransferase 3A; Disease Models, Animal; Disease Progression; Lymphoma, T-Cell / genetics; Lymphoma, T-Cell / pathology; Mice; Promoter Regions, Genetic / genetics; Proto-Oncogene Proteins c-myc / genetics; Transcriptome / genetics; Up-Regulation / genetics
Source: Crossref
Added: December 21, 2020

2015 journal article

Crystal structure and thermal expansion of a CsCe2Cl7 scintillator

Journal of Solid State Chemistry, 227, 142–149.

author keywords: X-ray diffraction; Crystal structure; Thermal expansion; Scintillator; Crystal growth
Sources: Crossref, ORCID
Added: September 4, 2020

2015 journal article

Cytosolic Fe-S Cluster Protein Maturation and Iron Regulation Are Independent of the Mitochondrial Erv1/Mia40 Import System

Journal of Biological Chemistry, 290(46), 27829–27840.

By: H. Ozer*, A. Dlouhy*, J. Thornton*, J. Hu*, Y. Liu*, J. Barycki*, J. Balk*, C. Outten*

MeSH headings : Amino Acid Sequence; Cytosol / metabolism; Glutamate-Cysteine Ligase / metabolism; Glutathione / deficiency; Glutathione / metabolism; Iron / metabolism; Iron-Sulfur Proteins / metabolism; Mitochondria / metabolism; Mitochondrial Membrane Transport Proteins / genetics; Mitochondrial Membrane Transport Proteins / metabolism; Mitochondrial Precursor Protein Import Complex Proteins; Mitochondrial Proteins / genetics; Mitochondrial Proteins / metabolism; Molecular Sequence Data; Mutation; Oxidation-Reduction; Oxidoreductases / metabolism; Oxidoreductases Acting on Sulfur Group Donors / genetics; Oxidoreductases Acting on Sulfur Group Donors / metabolism; Protein Transport; Saccharomyces cerevisiae / genetics; Saccharomyces cerevisiae / metabolism; Saccharomyces cerevisiae / ultrastructure; Saccharomyces cerevisiae Proteins / genetics; Saccharomyces cerevisiae Proteins / metabolism
Source: Crossref
Added: February 24, 2020

2015 journal article

Hyaluronidase Hyal1 Increases Tumor Cell Proliferation and Motility through Accelerated Vesicle Trafficking

Journal of Biological Chemistry, 290(21), 13144–13156.

By: C. McAtee*, A. Berkebile*, C. Elowsky*, T. Fangman*, J. Barycki*, J. Wahl*, O. Khalimonchuk*, N. Naslavsky*, S. Caplan*, M. Simpson*

MeSH headings : Adenocarcinoma / metabolism; Adenocarcinoma / pathology; Antigens, Neoplasm / metabolism; Apoptosis; Blotting, Western; Cell Movement; Cell Proliferation; Endocytosis / physiology; Endosomes / metabolism; Histone Acetyltransferases / metabolism; Humans; Hyaluronic Acid / metabolism; Hyaluronoglucosaminidase / metabolism; Male; Prostatic Neoplasms / metabolism; Prostatic Neoplasms / pathology; Protein Transport; Subcellular Fractions; Transferrin / metabolism; Transport Vesicles / metabolism; Tumor Cells, Cultured
Source: Crossref
Added: February 24, 2020

2015 journal article

CCR2 deficiency leads to increased eosinophils, alternative macrophage activation, and type 2 cytokine expression in adipose tissue

Journal of Leukocyte Biology, 98(4), 467–477.

By: W. Bolus*, D. Gutierrez*, A. Kennedy*, E. Anderson-Baucum* & A. Hasty*

author keywords: inflammation; obesity; interleukin 5
MeSH headings : Adipose Tissue / immunology; Animals; Cell Separation; Eosinophils / immunology; Flow Cytometry; Immunohistochemistry; Inflammation / immunology; Insulin Resistance / immunology; Interleukin-13 / biosynthesis; Interleukin-4 / biosynthesis; Interleukin-5 / biosynthesis; Macrophage Activation / immunology; Male; Mice; Mice, Inbred C57BL; Mice, Knockout; Obesity / immunology; Real-Time Polymerase Chain Reaction; Receptors, CCR2 / immunology
Sources: Crossref, ORCID
Added: January 20, 2020

2015 journal article

Activation of NF-κB drives the enhanced survival of adipose tissue macrophages in an obesogenic environment

Molecular Metabolism, 4(10), 665–677.

By: A. Hill*, E. Anderson-Baucum*, A. Kennedy*, C. Webb*, F. Yull* & A. Hasty*

author keywords: Adipose tissue; Macrophage; Apoptosis; Cleaved caspase-3; NF-kappa B; Survival
Sources: Crossref, ORCID
Added: January 20, 2020

2015 journal article

GLO-Roots: An imaging platform enabling multidimensional characterization of soil-grown root systems

ELife, 4(AUGUST2015).

Source: ORCID
Added: November 15, 2019

2015 review

Alphavirus Entry into Host Cells

[Review of ]. Molecular basis of viral infection, 129, 33–62.

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Structure-based approach to the identification of a novel group of selective glucosamine analogue inhibitors of Trypanosoma cruzi glucokinase

Molecular and Biochemical Parasitology, 204(2), 64–76.

By: E. D'Antonio, M. Deinema, S. Kearns, T. Frey, S. Tanghe, K. Perry, T. Roy, H. Gracz, A. Rodriguez, J. D'Antonio

Source: NC State University Libraries
Added: August 6, 2018

2015 journal article

Neutron Crystal Structure of RAS GTPase Puts in Question the Protonation State of the GTP gamma-Phosphate

JOURNAL OF BIOLOGICAL CHEMISTRY, 290(52), 31025–31036.

By: R. Knihtila*, G. Holzapfel n, K. Weiss*, F. Meilleur n & C. Mattos n

MeSH headings : Catalysis; Guanosine Triphosphate / analogs & derivatives; Guanosine Triphosphate / chemistry; Guanosine Triphosphate / genetics; Guanosine Triphosphate / metabolism; Humans; Hydrolysis; Neutrons; Protein Structure, Tertiary; Proto-Oncogene Proteins p21(ras) / chemistry; Proto-Oncogene Proteins p21(ras) / genetics; Proto-Oncogene Proteins p21(ras) / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2015 journal article

Performing protein crosslinking using gas-phase cleavable chemical crosslinkers and liquid chromatography-tandem mass spectrometry

METHODS, 89, 64–73.

By: A. Argo n, C. Shi n, F. Liu n & M. Goshe n

author keywords: Protein structure; Protein-protein interactions; Crosslinking; Gas-phase cleavable crosslinkers; CID-cleavable crosslinkers; Mass spectrometry
MeSH headings : Animals; Cattle; Chromatography, Liquid / methods; Cross-Linking Reagents / chemistry; Cross-Linking Reagents / metabolism; Protein Binding / physiology; Serum Albumin, Bovine / analysis; Serum Albumin, Bovine / metabolism; Tandem Mass Spectrometry / methods
Source: Web Of Science
Added: August 6, 2018

2015 article

Is His54 a gating residue for the ferritin ferroxidase site?

Bernacchioni, C., Ciambellotti, S., Theil, E. C., & Turano, P. (2015, September). BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, Vol. 1854, pp. 1118–1122.

By: C. Bernacchioni, S. Ciambellotti, E. Theil* & P. Turano

author keywords: Ferritin; Ferroxidase site; Reaction kinetics; Mutagenesis
MeSH headings : Binding Sites; Ceruloplasmin / chemistry; Crystallography, X-Ray; Ferritins / chemistry; Histidine / chemistry; Histidine / metabolism; Iron / chemistry
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Gene-Specific Translation Regulation Mediated by the Hormone-Signaling Molecule EIN2

CELL, 163(3), 684–697.

MeSH headings : 3' Untranslated Regions; Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; DNA-Binding Proteins; Ethylenes / metabolism; F-Box Proteins / genetics; Gene Expression Regulation, Plant; Nuclear Proteins / metabolism; Protein Biosynthesis; RNA, Messenger / metabolism; Receptors, Cell Surface / metabolism; Ribosomes / metabolism; Signal Transduction; Transcription Factors / metabolism
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Fe2+ substrate transport through ferritin protein cage ion channels influences enzyme activity and biomineralization

JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY, 20(6), 957–969.

author keywords: Ferritin; Iron oxidation; Ion channels; Crystal structure; Electrostatics; Di-iron center; Diferric peroxo; Caged iron-oxy biomineral; Oxidoreductase enzyme reactivity
MeSH headings : Amino Acid Substitution; Crystallography, X-Ray; Ferritins / metabolism; Ferritins / ultrastructure; Ferrous Compounds / metabolism; Ion Channels / metabolism; Ion Channels / ultrastructure; Iron / chemistry; Kinetics; Protein Structure, Secondary
Source: Web Of Science
Added: August 6, 2018

2015 journal article

Elevated cholesteryl ester transfer protein (CETP) activity, a major determinant of the atherogenic dyslipidemia, and atherosclerotic cardiovascular disease in South Asians

EUROPEAN JOURNAL OF PREVENTIVE CARDIOLOGY, 22(4), 468–477.

By: S. Rashid*, A. Sniderman*, M. Melone*, P. Brown*, J. Otvos n, A. Mente*, K. Schulze*, M. McQueen*, S. Anand*, S. Yusuf*

author keywords: Cholesteryl ester transfer protein (CETP); HDL; LDL; atherogenic dyslipoproteinemia; atherosclerotic cardiovascular diseases; South Asians
MeSH headings : Adult; Aged; Asia / ethnology; Asian People; Atherosclerosis / blood; Atherosclerosis / diagnosis; Atherosclerosis / ethnology; Biomarkers / blood; Canada / epidemiology; Cholesterol Ester Transfer Proteins / blood; Cholesterol, HDL / blood; Cholesterol, LDL / blood; Cross-Sectional Studies; Dyslipidemias / blood; Dyslipidemias / diagnosis; Dyslipidemias / ethnology; Europe / ethnology; Female; Health Status Disparities; Humans; Male; Middle Aged; Risk Factors; Severity of Illness Index; Triglycerides / blood; Up-Regulation; White People
Source: Web Of Science
Added: August 6, 2018