Bioinformatics Research Center

Works Published in 2005

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Sorted by most recent date added to the index first, which may not be the same as publication date order.

2005 journal article

Modeling quantitative trait loci and interpretation of models

GENETICS, 169(3), 1711–1725.

MeSH headings : Gene Frequency; Linkage Disequilibrium; Models, Genetic; Models, Statistical; Quantitative Trait Loci; Regression Analysis
TL;DR: A quantitative genetic model relates the genotypic value of an individual to the alleles at the loci that contribute to the variation in a population in terms of additive, dominance, and epistatic effects and proposes a number of models to describe this relationship. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Genetic architecture of transcript-level variation in differentiating xylem of a eucalyptus hybrid

GENETICS, 169(4), 2295–2303.

MeSH headings : Cell Differentiation; Chimera; Chromosome Mapping; Crosses, Genetic; Eucalyptus / genetics; Gene Expression Regulation; Genes, Plant; Genetic Linkage; Genetic Markers; Genetic Variation; Genome, Plant; Genotype; Nucleic Acid Hybridization; Oligonucleotide Array Sequence Analysis; Phylogeny; Quantitative Trait Loci; RNA, Messenger / metabolism
TL;DR: To analyze and compare the genetic architecture of transcript regulation in different genetic backgrounds of Eucalyptus, microarrays were used to examine variation in mRNA abundance in the differentiating xylem of a E. grandis pseudobackcross population. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(12), 4436–4441.

MeSH headings : Biological Evolution; Databases, Genetic; Genetic Techniques; Genetic Variation; Likelihood Functions; Models, Genetic; Phylogeny
TL;DR: Two criteria for inferring the optimal tree topology from data sets with multiple genes and a two-stage bootstrap procedure that involves resampling genes and then resamplings alignment columns within resampled genes are discussed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

QTL mapping and the genetic basis of adaptation: recent developments

GENETICA, 123(1-2), 25–37.

By: Z. Zeng n

author keywords: genetic architecture; genetic basis of adaptation; genetic correlation; genotype by environment interaction; microarrays; QTL mapping; quantitative trait loci
MeSH headings : Adaptation, Biological / genetics; Biological Evolution; Chromosome Mapping; Data Interpretation, Statistical; Epistasis, Genetic; Likelihood Functions; Lod Score; Models, Genetic; Oligonucleotide Array Sequence Analysis; Quantitative Trait Loci; Selection, Genetic
TL;DR: Quantitative trait loci (QTL) mapping has been used in a number of evolutionary studies to study the genetic basis of adaptation by mapping individual QTL that explain the differences between differentiated populations and also estimating their effects and interaction in the mapping population. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2005 journal article

Mixture model equations for marker-assisted genetic evaluation

JOURNAL OF ANIMAL BREEDING AND GENETICS, 122(4), 229–239.

MeSH headings : Animals; Animals, Domestic / genetics; Genetic Markers; Genotype; Linear Models; Male; Models, Genetic; Quantitative Trait Loci / genetics
TL;DR: A set of mixture model equations was derived based on the normal mixture model and the EM algorithm for evaluating linear models with uncertain independent variables to provide a general framework to deal with the issues of uncertain incidence matrices in linear models. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

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