Bioinformatics Research Center

Works Published in 2009

search works

Displaying all 9 works

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2009 journal article

Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains

Genetic Epidemiology, 33(2), 181–181.

By: Y. Kim n, S. Feng n & Z. Zeng n

TL;DR: Measuring and Partitioning the High-Order Linkage Disequilibrium by Multiple Order Markov Chains by Multiple order Markov chains and Zhao-Bang Zeng Bioinformatics Research Center. (via Semantic Scholar)
UN Sustainable Development Goal Categories
4. Quality Education (OpenAlex)
Source: Crossref
Added: April 4, 2021

2009 journal article

Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci

Gene, 441(1-2), 45–52.

MeSH headings : Evolution, Molecular; Gene Frequency; Humans; Polymorphism, Single Nucleotide; Protein Structure, Tertiary; Proteins / genetics; Selection, Genetic
TL;DR: This work focuses on 140 nonsynonymous single nucleotide polymorphisms of humans that are in proteins with known tertiary structures and finds that the technique for employing protein tertiary structure information yields some biologically plausible results but that it does not substantially improve the inference of ancestral human allele types. (via Semantic Scholar)
Source: NC State University Libraries
Added: August 6, 2018

2009 article

The Third International Conference of Quantitative Genetics

Weir, B. S., Hill, W. G., Zhu, J., & Zeng, Z.-B. (2009, June). GENETICA, Vol. 136, pp. 211–212.

MeSH headings : Animals; China; Genetics; Humans; Internationality
TL;DR: The wide range of topics and methods discussed in these papers show the diversity of applications of quantitative genetics and of the technologies employed, and were run as a single session in order to foster interactions and exchange of ideas and problems among those working on these different systems, species and technologies. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2009 journal article

Reconstructing ancestral ranges in historical biogeography: properties and prospects

JOURNAL OF SYSTEMATICS AND EVOLUTION, 47(5), 369–382.

By: K. Lamm n & B. Redelings n

author keywords: allopatry; ancestral range; ancestral state reconstruction; biogeography; dispersal; historical biogeography; review; speciation; statistics; vicariance
TL;DR: It is explored how the form of allowed ancestral ranges and allowed transitions can both affect the outcome of ancestral range estimation and some promising avenues for future work in the development of model‐based approaches to biogeographic analysis are mentioned. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2009 journal article

Multiple interval mapping for gene expression QTL analysis

GENETICA, 137(2), 125–134.

By: W. Zou n & Z. Zeng n

author keywords: eQTL; FDR; MIM; Model selection
MeSH headings : Chromosome Mapping / methods; Computer Simulation; Gene Expression; Genomics / methods; Models, Genetic; Quantitative Trait Loci / genetics; Yeasts
TL;DR: A statistical method to claim expression quantitative trait loci (eQTL) in a genome is developed based on multiple interval mapping (MIM), a model selection procedure, and uses false discovery rate (FDR) to measure the statistical significance of the large number of eQTL. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2009 journal article

Contribution of genetic effects to genetic variance components with epistasis and linkage disequilibrium

BMC GENETICS, 10.

MeSH headings : Alleles; Epistasis, Genetic; Genetic Variation; Genotype; Linkage Disequilibrium; Models, Genetic; Quantitative Trait Loci; Regression Analysis
TL;DR: The Cockerham type models are allelic based models with a focus on partition of genotypic variances into various genetic variance components, which are contributed by allelic effects and their interactions, while the F∞ regression models are genotype-based models focusing on modeling and testing of within-locusgenotypic effects and locus-by- locus genotypes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2009 journal article

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

BMC PLANT BIOLOGY, 9.

By: A. Barakat*, D. DiLoreto*, Y. Zhang*, C. Smith n, K. Baier*, W. Powell*, N. Wheeler n, R. Sederoff n, J. Carlson*

MeSH headings : Ascomycota; DNA, Complementary / genetics; Expressed Sequence Tags; Fagaceae / genetics; Fagaceae / microbiology; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Library; Genes, Plant; Genomics; Plant Diseases / genetics; RNA, Plant / genetics; Sequence Analysis, DNA
TL;DR: This study sequenced the transcriptome from fungal infected and healthy stem tissues collected from blight-sensitive American chestnut and blight-resistant Chinese chestnut trees using ultra high throughput pyrosequencing to identify genes involved in resistance to Cryphonectria parasitica, resulting in the identification of a large set of cDNA unigenes. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2009 article

Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains (vol 32, pg 301, 2008)

Genetic Epidemiology, Vol. 33, pp. 181–181.

By: Y. Kim, S. Feng & Z. Zeng

Source: NC State University Libraries
Added: August 6, 2018

2009 journal article

A Joint Association Test for Multiple SNPs in Genetic Case-Control Studies

GENETIC EPIDEMIOLOGY, 33(2), 151–163.

author keywords: haplotype association; retrospective likelihood; latent variable; logistic mixture model; EM algorithm
MeSH headings : Algorithms; Alleles; Case-Control Studies; Gene Frequency; Genetic Markers; Genetic Predisposition to Disease; Genotype; Haplotypes; Humans; Likelihood Functions; Linkage Disequilibrium; Logistic Models; Models, Genetic; Models, Statistical; Molecular Epidemiology / statistics & numerical data; Polymorphism, Single Nucleotide
TL;DR: A latent variable approach to test for association of multiple tightly linked SNPs in case‐control studies and an expectation‐maximization (EM)‐based algorithm to fit the penetrance model and estimate the joint haplotype frequencies of the DSL and markers simultaneously are proposed. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.

Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.