Bioinformatics - 2009

Bartlett, J. R., Friedman, K. J., Ling, S. C., Pace, R. G., Bell, S. C., Bourke, B., … Knowles, M. R. (2009). Genetic Modifiers of Liver Disease in Cystic Fibrosis. JAMA, 302(10), 1076–1083. https://doi.org/10.1001/jama.2009.1295

Bushel, P. R., Nielsen, D., & Tong, W. (2009). Proceedings of the First International Conference on Toxicogenomics Integrated with Environmental Sciences (TIES-2007). BMC Proceedings, 3(S2). https://doi.org/10.1186/1753-6561-3-s2-s1

Sullivan, P. F., Lin, D., Tzeng, J.-Y., van den Oord, E., Perkins, D., Stroup, T. S., … Close, S. L. (2009). Erratum: Genomewide association for schizophrenia in the CATIE study: results of stage 1. Molecular Psychiatry, 14(12), 1144–1144. https://doi.org/10.1038/mp.2008.74

Zou, F., Nie, L., Wright, F. A., & Sen, P. K. (2009). A robust QTL mapping procedure. Journal of Statistical Planning and Inference, 139(3), 978–989. https://doi.org/10.1016/j.jspi.2008.06.009

Gatti, D. M., Harrill, A. H., Wright, F. A., Threadgill, D. W., & Rusyn, I. (2009). Replication and narrowing of gene expression quantitative trait loci using inbred mice. Mammalian Genome, 20(7), 437–446. https://doi.org/10.1007/s00335-009-9199-0

Blackman, S. M., Hsu, S., Ritter, S. E., Naughton, K. M., Wright, F. A., Drumm, M. L., … Cutting, G. R. (2009). A susceptibility gene for type 2 diabetes confers substantial risk for diabetes complicating cystic fibrosis. Diabetologia, 52(9), 1858–1865. https://doi.org/10.1007/s00125-009-1436-2

Bird, D. M., Opperman, C. H., & Williamson, V. M. (2009). Plant infection by root-knot nematode. In Plant Cell Monographs (Vol. 15, pp. 1–13). https://doi.org/10.1007/978-3-540-85215-5_1

Bird, D. M., & Opperman, C. H. (2009). The secret(ion) life of worms. Genome Biology, 10(1), 205. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-69449107507&partnerID=MN8TOARS

Opperman, C. H., Bird, D. M., & Schaff, J. E. (2009). Genomic analysis of the root-knot nematode genome. In Plant Cell Monographs (Vol. 15, pp. 221–237). https://doi.org/10.1007/978-3-540-85215-5_8

Martin, M. T., Judson, R. S., Reif, D. M., Kavlock, R. J., & Dix, D. J. (2009). Profiling Chemicals Based on Chronic Toxicity Results from the U.S. EPA ToxRef Database. Environ Health Perspect, 117(3), 392–399. https://doi.org/10.1289/ehp.0800074

Judson, R. S., Houck, K. A., Kavlock, R. J., Knudsen, T. B., Martin, M. T., Mortensen, H. M., … Dix, D. J. (2009). In Vitro Screening of Environmental Chemicals for Targeted Testing Prioritization: The ToxCast Project. Environ Health Perspect, 118(4), 485–492. https://doi.org/10.1289/ehp.0901392

Heidenfelder, B. L., Reif, D. M., Harkema, J. R., Cohen Hubal, E. A., Hudgens, E. E., Bramble, L. A., … Gallagher, J. E. (2009). Comparative microarray analysis and pulmonary changes in Brown Norway rats exposed to ovalbumin and concentrated air particulates. Toxicological Sciences, 108(1), 207–221. https://doi.org/10.1093/toxsci/kfp005

Torto-Alalibo, T., Collmer, C. W., Lindeberg, M., Bird, D., Collmer, A., & Tyler, B. M. (2009). [Review of Common and contrasting themes in host cell-targeted effectors from bacterial, fungal, oomycete and nematode plant symbionts described using the Gene Ontology]. BMC MICROBIOLOGY, 9(SUPPL. 1). https://doi.org/10.1186/1471-2180-9-s1-s3

Sivamani, E., Starmer, J. D., & Qu, R. (2009). Sequence analysis of rice rubi3 promoter gene expression cassettes for improved transgene expression. PLANT SCIENCE, 177(6), 549–556. https://doi.org/10.1016/j.plantsci.2009.08.006

Motsinger-Reif, A. A., Reif, D. M., Fanelli, T. J., & Ritchie, M. D. (2009, December). A Comparison of Analytical Methods for Genetic Association Studies (vol 32, pg 767, 2008). GENETIC EPIDEMIOLOGY, Vol. 33, pp. 751–751. https://doi.org/10.1002/gepi.20420

Bird, D. M. K., Williamson, V. M., Abad, P., McCarter, J., Danchin, E. G. J., Castagnone-Sereno, P., & Opperman, C. H. (2009). The Genomes of Root-Knot Nematodes. ANNUAL REVIEW OF PHYTOPATHOLOGY, Vol. 47, pp. 333–351. https://doi.org/10.1146/annurev-phyto-080508-081839

Need, A. C., Keefe, R. S. E., Ge, D., Grossman, I., Dickson, S., McEvoy, J. P., & Goldstein, D. B. (2009). Pharmacogenetics of antipsychotic response in the CATIE trial: a candidate gene analysis. EUROPEAN JOURNAL OF HUMAN GENETICS, 17(7), 946–957. https://doi.org/10.1038/ejhg.2008.264

Stone, E. A., & Griffing, A. R. (2009). On the Fiedler vectors of graphs that arise from trees by Schur complementation of the Laplacian. LINEAR ALGEBRA AND ITS APPLICATIONS, 431(10), 1869–1880. https://doi.org/10.1016/j.laa.2009.06.024

Reininga, J. M., Nielsen, D., & Purugganan, M. D. (2009). Functional and geographical differentiation of candidate balanced polymorphisms in Arabidopsis thaliana. MOLECULAR ECOLOGY, 18(13), 2844–2855. https://doi.org/10.1111/j.1365-294X.2009.04206.x

Choi, S. C., Stone, E. A., Kishino, H., & Thorne, J. L. (2009). Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci. Gene, 441(1-2), 45–52. https://doi.org/10.1016/j.gene.2008.07.020

Zhang, L., Martin, E. R., Morris, R. W., & Li, Y.-J. (2009). Association Test for X-Linked QTL in Family-Based Designs. AMERICAN JOURNAL OF HUMAN GENETICS, 84(4), 431–444. https://doi.org/10.1016/j.ajhg.2009.02.010

Bischoff, S. R., Tsai, S., Hardison, N., Motsinger-Reif, A. A., Freking, B. A., Nonneman, D., … Piedrahita, J. A. (2009). Characterization of Conserved and Nonconserved Imprinted Genes in Swine. BIOLOGY OF REPRODUCTION, 81(5), 906–920. https://doi.org/10.1095/biolreprod.109.078139

Liu, Y., Li, Y.-J., Satten, G. A., Allen, A. S., & Tzeng, J.-Y. (2009). A Regression-based Association Test for Case-control Studies that Uses Inferred Ancestral Haplotype Similarity. ANNALS OF HUMAN GENETICS, 73, 520–526. https://doi.org/10.1111/j.1469-1809.2009.00536.x

Bird, D. M., & Opperman, C. H. (2009). [Review of The secret(ion) life of worms]. GENOME BIOLOGY, 10(1). https://doi.org/10.1186/gb-2009-10-1-205

Kim, Y. J., Feng, S., & Zeng, Z. B. (2009). Measuring and partitioning the high-order linkage disequilibrium by multiple order Markov chains (vol 32, pg 301, 2008). Genetic Epidemiology, Vol. 33, pp. 181–181.

Dunn, R. R., Agosti, D., Andersen, A. N., Arnan, X., Bruhl, C. A., Cerda, X., … Sanders, N. J. (2009). Climatic drivers of hemispheric asymmetry in global patterns of ant species richness. ECOLOGY LETTERS, 12(4), 324–333. https://doi.org/10.1111/j.1461-0248.2009.01291.x

Reif, D. M., Motsinger-Reif, A. A., McKinney, B. A., Rock, M. T., Crowe, J. E., Jr., & Moore, J. H. (2009). Integrated analysis of genetic and proteomic data identifies biomarkers associated with adverse events following smallpox vaccination. GENES AND IMMUNITY, 10(2), 112–119. https://doi.org/10.1038/gene.2008.80