Bioinformatics - 2007

Motsinger, A. A., Brassat, D., Caillier, S. J., Erlich, H. A., Walker, K., Steiner, L. L., … Ritchie, M. D. (2007). Complex gene–gene interactions in multiple sclerosis: a multifactorial approach reveals associations with inflammatory genes. Neurogenetics, 8(1), 11–20. https://doi.org/10.1007/S10048-006-0058-9

Motsinger, A. A., Haas, D. W., Hulgan, T., & Ritchie, M. D. (2007). Human Genomic Association Studies: A Primer for the Infectious Diseases Specialist. The Journal of Infectious Diseases, 195(12), 1737–1744. https://doi.org/10.1086/518247

Canter, J. A., Summar, M. L., Smith, H. B., Rice, G. D., Hall, L. D., Ritchie, M. D., … Barr, F. E. (2007). Genetic variation in the mitochondrial enzyme carbamyl-phosphate synthetase I predisposes children to increased pulmonary artery pressure following surgical repair of congenital heart defects: A validated genetic association study. Mitochondrion, 7(3), 204–210. https://doi.org/10.1016/j.mito.2006.11.001

Darbar, D., Motsinger, A. A., Ritchie, M. D., Gainer, J. V., & Roden, D. M. (2007). Polymorphism modulates symptomatic response to antiarrhythmic drug therapy in patients with lone atrial fibrillation. Heart Rhythm, 4(6), 743–749. https://doi.org/10.1016/j.hrthm.2007.02.006

Ritchie, M. D., Motsinger, A. A., Bush, W. S., Coffey, C. S., & Moore, J. H. (2007). Genetic programming neural networks: A powerful bioinformatics tool for human genetics. Applied Soft Computing, 7(1), 471–479. https://doi.org/10.1016/j.asoc.2006.01.013

Ritchie, M. D., Edwards, T. L., Fanelli, T. J., & Motsinger, A. A. (2007). Genetic heterogeneity is not as threatening as you might think. Genetic Epidemiology, 31(7), 797–800. https://doi.org/10.1002/gepi.20256

Velez, D. R., White, B. C., Motsinger, A. A., Bush, W. S., Ritchie, M. D., Williams, S. M., & Moore, J. H. (2007). A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction. Genetic Epidemiology, 31(4), 306–315. https://doi.org/10.1002/gepi.20211

Varnek, A., Fourches, D., Sieffert, N., Solov'ev, V. P., Hill, C., & Lecomte, M. (2007). QSPR Modeling of the AmIII/EuIIISeparation Factor: How Far Can we Predict ? Solvent Extraction and Ion Exchange, 25(1), 1–26. https://doi.org/10.1080/07366290601067481

Cary, J. W., OBrian, G. R., Nielsen, D. M., Nierman, W., Harris-Coward, P., Yu, J., … Calvo, A. M. (2007). Elucidation of veA-dependent genes associated with aflatoxin and sclerotial production in Aspergillus flavus by functional genomics. Applied Microbiology and Biotechnology, 76(5), 1107–1118. https://doi.org/10.1007/s00253-007-1081-y

Varnek, A., Fourches, D., Solov'ev, V., Klimchuk, O., Ouadi, A., & Billard, I. (2007). Successful “In Silico” Design of New Efficient Uranyl Binders. Solvent Extraction and Ion Exchange, 25(4), 433–462. https://doi.org/10.1080/07366290701415820

Motsinger, A. A., Ritchie, M. D., & Reif, D. M. (2007). Novel methods for detecting epistasis in pharmacogenomics studies. Pharmacogenomics, 8(9), 1229–1241. https://doi.org/10.2217/14622416.8.9.1229

Motsinger, A. A., Reif, D. M., Fanelli, T. J., Davis, A. C., & Ritchie, M. D. (2007). Linkage disequilibrium in genetic association studies improves the performance of grammatical evolution neural networks. 2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, CIBCB 2007, 1–8. Retrieved from http://www.scopus.com/inward/record.url?eid=2-s2.0-67650698880&partnerID=MN8TOARS

Motsinger, A. A., Reif, D. M., Fanelli, T. J., Davis, A. C., & Ritchie, M. D. (2007). Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks. Proceedings of the ... IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007, 1–8. Retrieved from http://europepmc.org/abstract/med/21572972

Reif, D. M., Israel, M. A., & Moore, J. H. (2007). Exploratory Visual Analysis of statistical results from microarray experiments comparing high and low grade glioma. Cancer Informatics, 5, 19–24. Retrieved from http://europepmc.org/abstract/med/19390666

McKinney, B. A., Reif, D. M., White, B. C., Je, C., Moore, J. H., & Bioinformatics. (2007). Evaporative cooling feature selection for genotypic data involving interactions. Bioinformatics, 23(16), 2113–2120. https://doi.org/10.1093/bioinformatics/btm317

Elling, A. A., Mitreva, M., Recknor, J., Gai, X., Martin, J., Maier, T. R., … Baum, T. J. (2007). Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines. GENOME BIOLOGY, 8(10). https://doi.org/10.1186/gb-2007-8-10-r211

Bockhorst, J., Lu, F., Janes, J. H., Keebler, J., Gamain, B., Awadalla, P., … Smith, J. D. (2007). Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA. MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 155(2), 103–112. https://doi.org/10.1016/j.molbiopara.2007.06.007

Schaff, J. E., Nielsen, D. M., Smith, C. P., Scholl, E. H., & Bird, D. M. K. (2007). Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance. Plant Physiology, 144(2), 1079–1092. https://doi.org/10.1104/pp.106.090241

Choi, S. C., Hobolth, A., Robinson, D. M., Kishino, H., & Thorne, J. L. (2007). Quantifying the impact of protein tertiary structure on molecular evolution. MOLECULAR BIOLOGY AND EVOLUTION, 24(8), 1769–1782. https://doi.org/10.1093/molbev/msm097

Thorne, J. L., Choi, S. C., Yu, J., Higgs, P. G., & Kishino, H. (2007). Population genetics without intraspecific data. MOLECULAR BIOLOGY AND EVOLUTION, 24(8), 1667–1677. https://doi.org/10.1093/molbev/msm085

Shultz, R. W., Tatineni, V. M., Hanley-Bowdoin, L., & Thompson, W. F. (2007). [Review of Genome-wide analysis of the core DNA replication machinery in the higher plants Arabidopsis and rice(1[W][OA])]. Plant Physiology, 144(4), 1697–1714.

Chung, R.-H., Morris, R. W., Zhang, L., Li, Y.-J., & Martin, E. R. (2007). X-APL: An improved family-based test of association in the presence of linkage for the X chromosome. AMERICAN JOURNAL OF HUMAN GENETICS, 80(1), 59–68. https://doi.org/10.1086/510630

Mu, J., Awadalla, P., Duan, J., McGee, K. M., Keebler, J., Seydel, K., … Su, X.-zhuan. (2007). Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome. NATURE GENETICS, 39(1), 126–130. https://doi.org/10.1038/ng1924

Zou, W., Aylor, D. L., & Zeng, Z. B. (2007). eQTL Viewer: visualizing how sequence variation affects genome-wide transcription. BMC Bioinformatics, 8(7).