Works Published in 2007

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Displaying works 1 - 20 of 24 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2007 journal article

Complex gene–gene interactions in multiple sclerosis: a multifactorial approach reveals associations with inflammatory genes

Neurogenetics, 8(1), 11–20.

By: A. Motsinger*, D. Brassat*, S. Caillier*, H. Erlich*, K. Walker*, L. Steiner*, L. Barcellos*, M. Pericak-Vance* ...

co-author countries: United States of America 🇺🇸
author keywords: multiple sclerosis; multifactor dimensionality reduction; epistasis
MeSH headings : Case-Control Studies; Genotype; Humans; Inflammation / genetics; Models, Genetic; Multiple Sclerosis / genetics; Multiple Sclerosis / pathology; Proteins / genetics
Source: Crossref
Added: October 29, 2021

2007 journal article

Human Genomic Association Studies: A Primer for the Infectious Diseases Specialist

The Journal of Infectious Diseases, 195(12), 1737–1744.

By: A. Motsinger*, D. Haas*, T. Hulgan* & M. Ritchie*

co-author countries: United States of America 🇺🇸
MeSH headings : Communicable Diseases / genetics; Genetic Linkage / genetics; Genome, Human / genetics; Genomics / methods; HIV Infections / drug therapy; HIV Infections / genetics; Haplotypes; Humans; Phenotype; Polymorphism, Single Nucleotide; Research Design
Source: Crossref
Added: October 29, 2021

2007 journal article

Genetic variation in the mitochondrial enzyme carbamyl-phosphate synthetase I predisposes children to increased pulmonary artery pressure following surgical repair of congenital heart defects: A validated genetic association study

Mitochondrion, 7(3), 204–210.

By: J. Canter*, M. Summar*, H. Smith*, G. Rice*, L. Hall*, M. Ritchie*, A. Motsinger*, K. Christian* ...

co-author countries: United States of America 🇺🇸
author keywords: mitochondrial enzyme; CPSI; pulmonary artery pressure
MeSH headings : Carbamoyl-Phosphate Synthase (Ammonia) / genetics; Cohort Studies; DNA / blood; DNA / genetics; DNA Primers; Down Syndrome / epidemiology; Female; Genetic Variation; Heart Defects, Congenital / surgery; Humans; Hypertension, Pulmonary / epidemiology; Infant; Male; Polymerase Chain Reaction; Polymorphism, Genetic; Postoperative Complications / physiopathology; Reproducibility of Results
Source: Crossref
Added: October 29, 2021

2007 journal article

Polymorphism modulates symptomatic response to antiarrhythmic drug therapy in patients with lone atrial fibrillation

Heart Rhythm, 4(6), 743–749.

By: D. Darbar*, A. Motsinger*, M. Ritchie*, J. Gainer* & D. Roden*

co-author countries: United States of America 🇺🇸
author keywords: atrial fibrillation; antiarrhythmic drugs; angiotensin-converting-enzyme; genetics
MeSH headings : Acetylcysteine / metabolism; Alleles; Anti-Arrhythmia Agents / pharmacology; Anti-Arrhythmia Agents / therapeutic use; Atrial Fibrillation / drug therapy; Atrial Fibrillation / genetics; Female; Gene Deletion; Genotype; Humans; Male; Middle Aged; Peptidyl-Dipeptidase A / genetics; Polymorphism, Genetic; Prospective Studies; Renin-Angiotensin System / drug effects
Source: Crossref
Added: October 29, 2021

2007 journal article

Genetic programming neural networks: A powerful bioinformatics tool for human genetics

Applied Soft Computing, 7(1), 471–479.

By: M. Ritchie*, A. Motsinger*, W. Bush*, C. Coffey* & J. Moore*

co-author countries: United States of America 🇺🇸
author keywords: nueral networks; genetic programming; bioinformatics; epistasis; gene-gene interactions
Source: Crossref
Added: October 29, 2021

2007 journal article

Genetic heterogeneity is not as threatening as you might think

Genetic Epidemiology, 31(7), 797–800.

By: M. Ritchie*, T. Edwards*, T. Fanelli* & A. Motsinger*

co-author countries: United States of America 🇺🇸
MeSH headings : Genetic Variation; Humans; Models, Genetic; Quantitative Trait Loci / genetics
Source: Crossref
Added: October 29, 2021

2007 journal article

A balanced accuracy function for epistasis modeling in imbalanced datasets using multifactor dimensionality reduction

Genetic Epidemiology, 31(4), 306–315.

By: D. Velez*, B. White, A. Motsinger*, W. Bush*, M. Ritchie*, S. Williams*, J. Moore*

co-author countries: United States of America 🇺🇸
MeSH headings : Algorithms; Epistasis, Genetic; Gene Frequency; Humans; Models, Genetic; Polymorphism, Single Nucleotide; Sample Size; Software
Source: Crossref
Added: October 29, 2021

2007 journal article

QSPR Modeling of the AmIII/EuIIISeparation Factor: How Far Can we Predict ?

Solvent Extraction and Ion Exchange, 25(1), 1–26.

By: A. Varnek, D. Fourches*, N. Sieffert, V. Solov'ev*, C. Hill* & M. Lecomte*

co-author countries: France 🇫🇷 Russian Federation 🇷🇺
author keywords: solvent extraction; Am/Eu separation factor; substructural molecular fragments; QSPR; polydentate nitrogen ligands; aqueous solubility; neural networks; clustering
Source: Crossref
Added: January 24, 2021

2007 journal article

Elucidation of veA-dependent genes associated with aflatoxin and sclerotial production in Aspergillus flavus by functional genomics

Applied Microbiology and Biotechnology, 76(5), 1107–1118.

By: J. Cary*, G. OBrian n, D. Nielsen n, W. Nierman*, P. Harris-Coward*, J. Yu*, D. Bhatnagar*, T. Cleveland*, G. Payne n, A. Calvo*

co-author countries: United States of America 🇺🇸
author keywords: Aspergillus flavus; veA; aflatoxin; sclerotia; microarray
MeSH headings : Aflatoxins / biosynthesis; Anthraquinones / metabolism; Aspergillus flavus / genetics; Aspergillus flavus / growth & development; Aspergillus flavus / metabolism; Fungal Proteins / genetics; Fungal Proteins / metabolism; Gene Expression Profiling; Gene Expression Regulation, Fungal; Gene Library; Genomics; Oligonucleotide Array Sequence Analysis / methods
Sources: Crossref, ORCID
Added: September 5, 2020

2007 journal article

Successful “In Silico” Design of New Efficient Uranyl Binders

Solvent Extraction and Ion Exchange, 25(4), 433–462.

co-author countries: France 🇫🇷 Russian Federation 🇷🇺 Ukraine 🇺🇦
author keywords: QSPR; ISIDA program; in silico design; solvent extraction; uranyl cation
Source: Crossref
Added: August 28, 2020

2007 journal article

Novel methods for detecting epistasis in pharmacogenomics studies

Pharmacogenomics, 8(9), 1229–1241.

By: A. Motsinger n, M. Ritchie* & D. Reif*

co-author countries: United States of America 🇺🇸

Contributors: A. Motsinger n, M. Ritchie* & D. Reif*

author keywords: data-mining; epistasis; gene-environment; interactions; gene-gene; interactions; novel; computational methods; pharmacogenomics
MeSH headings : Algorithms; Epistasis, Genetic; Genetic Diseases, Inborn / drug therapy; Genetic Diseases, Inborn / genetics; Humans; Mutation; Pharmacogenetics / methods
Source: ORCID
Added: May 14, 2019

2007 conference paper

Linkage disequilibrium in genetic association studies improves the performance of grammatical evolution neural networks

2007 IEEE Symposium on Computational Intelligence and Bioinformatics and Computational Biology, CIBCB 2007, 1–8. http://www.scopus.com/inward/record.url?eid=2-s2.0-67650698880&partnerID=MN8TOARS

By: A. Motsinger, D. Reif, T. Fanelli, A. Davis & M. Ritchie

Contributors: A. Motsinger, D. Reif, T. Fanelli, A. Davis & M. Ritchie

Source: ORCID
Added: May 14, 2019

2007 journal article

Linkage Disequilibrium in Genetic Association Studies Improves the Performance of Grammatical Evolution Neural Networks.

Proceedings of the ... IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology. IEEE Symposium on Computational Intelligence in Bioinformatics and Computational Biology, 2007, 1–8. http://europepmc.org/abstract/med/21572972

By: A. Motsinger, D. Reif, T. Fanelli, A. Davis & M. Ritchie

Source: ORCID
Added: May 14, 2019

2007 journal article

Exploratory Visual Analysis of statistical results from microarray experiments comparing high and low grade glioma.

Cancer Informatics, 5, 19–24. http://europepmc.org/abstract/med/19390666

By: D. Reif, M. Israel & J. Moore

Contributors: D. Reif, M. Israel & J. Moore

Source: ORCID
Added: May 14, 2019

2007 journal article

Evaporative cooling feature selection for genotypic data involving interactions.

Bioinformatics, 23(16), 2113–2120.

By: B. McKinney*, D. Reif*, B. White*, C. Je, J. Moore* & Bioinformatics

co-author countries: United States of America 🇺🇸

Contributors: B. McKinney*, D. Reif*, B. White*, J. Crowe Jr. & J. Moore*

MeSH headings : Base Sequence; Chromosome Mapping / methods; Computer Simulation; DNA Mutational Analysis / methods; Databases, Genetic; Evolution, Molecular; Genotype; Models, Genetic; Models, Statistical; Molecular Sequence Data; Sequence Analysis, DNA / methods
Source: ORCID
Added: May 14, 2019

2007 journal article

Divergent evolution of arrested development in the dauer stage of Caenorhabditis elegans and the infective stage of Heterodera glycines

GENOME BIOLOGY, 8(10).

By: A. Elling*, M. Mitreva*, J. Recknor*, X. Gai*, J. Martin*, T. Maier*, J. McDermott*, T. Hewezi* ...

co-author countries: United States of America 🇺🇸

Contributors: A. Elling*, M. Mitreva*, J. Recknor*, X. Gai*, J. Martin*, T. Maier*, J. McDermott*, T. Hewezi* ...

MeSH headings : Animals; Caenorhabditis elegans / metabolism; Computational Biology; Expressed Sequence Tags; Gene Expression Profiling; Gene Expression Regulation, Developmental; Gene Library; Larva / metabolism; Oligonucleotide Array Sequence Analysis; Reverse Transcriptase Polymerase Chain Reaction; Sequence Analysis, DNA; Soybeans / parasitology; Species Specificity; Tylenchoidea / metabolism
Sources: Web Of Science, ORCID
Added: August 6, 2018

2007 journal article

Structural polymorphism and diversifying selection on the pregnancy malaria vaccine candidate VAR2CSA

MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 155(2), 103–112.

By: J. Bockhorst*, F. Lu*, J. Janes*, J. Keebler n, B. Gamain*, P. Awadalla n, X. Su*, R. Samudrala*, N. Jojica, J. Smith*

co-author countries: France 🇫🇷 United States of America 🇺🇸
author keywords: antigenic variation; malaria; Plasmodium falciparum; var genes
MeSH headings : Animals; Antigens, Protozoan / chemistry; Antigens, Protozoan / genetics; Antigens, Protozoan / immunology; Computational Biology / methods; DNA, Protozoan / chemistry; DNA, Protozoan / genetics; Female; Geography; Humans; Malaria / immunology; Malaria / parasitology; Malaria Vaccines / immunology; Models, Molecular; Molecular Sequence Data; Phylogeny; Plasmodium falciparum / genetics; Plasmodium falciparum / isolation & purification; Polymorphism, Genetic; Pregnancy; Pregnancy Complications, Parasitic / immunology; Pregnancy Complications, Parasitic / prevention & control; Protein Structure, Tertiary; Selection, Genetic; Sequence Analysis, DNA; Sequence Homology, Amino Acid
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Comprehensive Transcriptome Profiling in Tomato Reveals a Role for Glycosyltransferase in Mi-Mediated Nematode Resistance

Plant Physiology, 144(2), 1079–1092.

By: J. Schaff n, D. Nielsen n, C. Smith n, E. Scholl n & D. Bird n

co-author countries: United States of America 🇺🇸

Contributors: J. Schaff n, D. Nielsen n, C. Smith n, E. Scholl n & D. Bird n

MeSH headings : Animals; Feeding Behavior / physiology; Gene Expression; Gene Expression Profiling; Gene Expression Regulation, Plant; Gene Silencing; Genomics; Glycosyltransferases / metabolism; Host-Parasite Interactions / physiology; Solanum lycopersicum / enzymology; Solanum lycopersicum / genetics; Solanum lycopersicum / parasitology; Oligonucleotide Array Sequence Analysis; Plant Roots / enzymology; Plant Roots / metabolism; Plant Roots / parasitology; Reproduction / physiology; Tylenchoidea / physiology
Sources: Web Of Science, ORCID, Crossref
Added: August 6, 2018

2007 journal article

Quantifying the impact of protein tertiary structure on molecular evolution

MOLECULAR BIOLOGY AND EVOLUTION, 24(8), 1769–1782.

By: S. Choi n, A. Hobolth n, D. Robinson n, H. Kishino* & J. Thorne n

co-author countries: Germany 🇩🇪 Japan 🇯🇵 United States of America 🇺🇸
author keywords: molecular evolution; protein structure impact; Gene Ontology; MCMC; Bayes factor
MeSH headings : Bayes Theorem; Computational Biology; Computer Simulation; Data Interpretation, Statistical; Evolution, Molecular; Protein Structure, Tertiary; Proteins / chemistry; Proteins / genetics; Sequence Alignment
Source: Web Of Science
Added: August 6, 2018

2007 journal article

Population genetics without intraspecific data

MOLECULAR BIOLOGY AND EVOLUTION, 24(8), 1667–1677.

co-author countries: Canada 🇨🇦 Germany 🇩🇪 Denmark 🇩🇰 Japan 🇯🇵 United States of America 🇺🇸
author keywords: dependence among sites; fixation probability; protein structure; RNA structure
MeSH headings : Animals; Annexin A5 / genetics; Computational Biology; Computer Simulation; Evolution, Molecular; Genetic Variation; Genetics, Population; Likelihood Functions; Mice; Models, Biological; Models, Genetic; Nucleic Acid Conformation; Phenotype; Phylogeny; RNA / chemistry; RNA / genetics; Rats; Selection, Genetic
Source: Web Of Science
Added: August 6, 2018

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