Bioinformatics

Interdisciplinary Programs

Works Published in 2013

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2013 journal article

A method for detecting hidden additivity in two-factor unreplicated experiments

Computational Statistics & Data Analysis, 67, 95–104.

By: C. Franck, D. Nielsen & J. Osborne

Sources: Crossref, ORCID
Added: September 5, 2020

2013 journal article

Integrative Chemical–Biological Read-Across Approach for Chemical Hazard Classification

Chemical Research in Toxicology, 26(8), 1199–1208.

By: Y. Low, A. Sedykh, D. Fourches, A. Golbraikh, M. Whelan, I. Rusyn, A. Tropsha

Source: Crossref
Added: August 28, 2020

2013 journal article

Predicting Binding Affinity of CSAR Ligands Using Both Structure-Based and Ligand-Based Approaches

Journal of Chemical Information and Modeling, 53(8), 1915–1922.

By: D. Fourches, E. Muratov, F. Ding, N. Dokholyan & A. Tropsha

Source: Crossref
Added: August 28, 2020

2013 journal article

Discovery of Novel Antimalarial Compounds Enabled by QSAR-Based Virtual Screening

Journal of Chemical Information and Modeling, 53(2), 475–492.

By: L. Zhang, D. Fourches, A. Sedykh, H. Zhu, A. Golbraikh, S. Ekins, J. Clark, M. Connelly ...

Source: Crossref
Added: August 28, 2020

2013 journal article

Using Graph Indices for the Analysis and Comparison of Chemical Datasets

Molecular Informatics, 32(9-10), 827–842.

By: D. Fourches & A. Tropsha

Source: Crossref
Added: August 28, 2020

2013 journal article

Unified Analysis of Secondary Traits in Case–Control Association Studies

Journal of the American Statistical Association, 108(502), 566–576.

By: A. Ghosh, F. Wright & F. Zou

Source: Crossref
Added: August 28, 2020

2013 journal article

The Genotype-Tissue Expression (GTEx) project

Nature Genetics, 45(6), 580–585.

By: J. Lonsdale, J. Thomas, M. Salvatore, R. Phillips, E. Lo, S. Shad, R. Hasz, G. Walters ...

Source: Crossref
Added: August 28, 2020

2013 journal article

Assessment of beating parameters in human induced pluripotent stem cells enables quantitative in vitro screening for cardiotoxicity

Toxicology and Applied Pharmacology, 273(3), 500–507.

By: O. Sirenko, E. Cromwell, C. Crittenden, J. Wignall, F. Wright & I. Rusyn

Source: Crossref
Added: August 28, 2020

2013 journal article

Space-time clustering and the permutation moments of quadratic forms

Stat, 2(1), 292–302.

By: Y. Zhou, G. Mayhew, Z. Sun, X. Xu, F. Zou & F. Wright

Source: Crossref
Added: August 28, 2020

2013 journal article

The Value of Statistical or Bioinformatics Annotation for Rare Variant Association With Quantitative Trait

Genetic Epidemiology, 37(7), 666–674.

By: A. Byrnes, M. Wu, F. Wright, M. Li & Y. Li

Source: Crossref
Added: August 28, 2020

2013 journal article

Using the emerging Collaborative Cross to probe the immune system

Genes & Immunity, 15(1), 38–46.

By: J. Phillippi, Y. Xie, D. Miller, T. Bell, Z. Zhang, A. Lenarcic, D. Aylor, S. Krovi ...

Source: Crossref
Added: August 28, 2020

2013 journal article

Genetically Determined Severity of Anti-Myeloperoxidase Glomerulonephritis

The American Journal of Pathology, 182(4), 1219–1226.

By: H. Xiao, D. Ciavatta, D. Aylor, P. Hu, F. de Villena, R. Falk, J. Jennette

Source: Crossref
Added: August 28, 2020

2013 journal article

Solution NMR studies of the plant peptide hormone CEP inform function

FEBS Letters, 587(24), 3979–3985.

By: B. Bobay, P. Digennaro, E. Scholl, N. Imin, M. Djordjevic & D. McK Bird

Source: ORCID
Added: January 30, 2020

2013 journal article

Using in vitro high throughput screening assays to identify potential endocrine-disrupting chemicals.

Environmental Health Perspectives, 121(1), 7–14.

By: D. Rotroff, D. Dix, K. Houck, T. Knudsen, M. Martin, K. McLaurin, D. Reif, K. Crofton ...

Source: ORCID
Added: May 14, 2019

2013 journal article

ToxPi GUI: an interactive visualization tool for transparent integration of data from diverse sources of evidence.

Bioinformatics, 29(3), 402–403.

By: D. Reif, M. Sypa, E. Lock, F. Wright, A. Wilson, T. Cathey, R. Judson, I. Rusyn, Bioinformatics

Source: ORCID
Added: May 14, 2019

2013 journal article

Real-time growth kinetics measuring hormone mimicry for ToxCast chemicals in T-47D human ductal carcinoma cells.

Chemical Research in Toxicology, 26(7), 1097–1107.

By: D. Rotroff, D. Dix, K. Houck, R. Kavlock, T. Knudsen, M. Martin, D. Reif, A. Richard ...

Source: ORCID
Added: May 14, 2019

2013 journal article

Perspectives on validation of high-throughput assays supporting 21st century toxicity testing.

Altex, 30(1), 51–66.

By: R. Judson, R. Kavlock, M. Martin, D. Reif, K. Houck, T. Knudsen, A. Richard, R. Tice ...

Source: ORCID
Added: May 14, 2019

2013 journal article

In vitro perturbations of targets in cancer hallmark processes predict rodent chemical carcinogenesis.

Toxicological Sciences, 131(1), 40–55.

By: N. Kleinstreuer, D. Dix, K. Houck, R. Kavlock, T. Knudsen, M. Martin, K. Paul, D. Reif ...

Source: ORCID
Added: May 14, 2019

2013 journal article

Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.

BMC Systems Biology, 7, 119.

By: C. Williams-DeVane, D. Reif, E. Cohen Hubal, P. Bushel, E. Hudgens, J. Gallagher, S. Edwards

Source: ORCID
Added: May 14, 2019

2013 journal article

Comparing metabolomic and pathologic biomarkers alone and in combination for discriminating Alzheimer’s disease from normal cognitive aging

Acta Neuropathologica Communications, 1(1), 28.

By: A. Motsinger-Reif, H. Zhu, M. Kling, W. Matson, S. Sharma, O. Fiehn, D. Reif, D. Appleby ...

Source: ORCID
Added: May 14, 2019