Bioinformatics

Interdisciplinary Programs

Works Published in 2015

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2015 journal article

Comprehensive characterization of the Published Kinase Inhibitor Set

Nature Biotechnology, 34(1), 95–103.

By: J. Elkins, V. Fedele, M. Szklarz, K. Abdul Azeez, E. Salah, J. Mikolajczyk, S. Romanov, N. Sepetov ...

Source: Crossref
Added: January 21, 2021

2015 journal article

Synchronized age-related gene expression changes across multiple tissues in human and the link to complex diseases

Scientific Reports, 5(1), 15145.

By: J. Yang, T. Huang, F. Petralia, Q. Long, B. Zhang, C. Argmann, Y. Zhao, C. Mobbs ...

Source: Crossref
Added: January 4, 2021

2015 journal article

Erratum: Gene expression in major depressive disorder

Molecular Psychiatry, 21(3), 444–444.

By: R. Jansen, B. Penninx, V. Madar, K. Xia, Y. Milaneschi, J. Hottenga, A. Hammerschlag, A. Beekman ...

Source: Crossref
Added: August 28, 2020

2015 journal article

Gene expression in major depressive disorder

Molecular Psychiatry, 21(3), 339–347.

By: R. Jansen, B. Penninx, V. Madar, K. Xia, Y. Milaneschi, J. Hottenga, A. Hammerschlag, A. Beekman ...

Source: Crossref
Added: August 28, 2020

2015 journal article

Predicting chemically-induced skin reactions. Part I: QSAR models of skin sensitization and their application to identify potentially hazardous compounds

Toxicology and Applied Pharmacology, 284(2), 262–272.

By: V. Alves, E. Muratov, D. Fourches, J. Strickland, N. Kleinstreuer, C. Andrade, A. Tropsha

Source: Crossref
Added: February 24, 2020

2015 journal article

Materials Cartography: Representing and Mining Materials Space Using Structural and Electronic Fingerprints

Chemistry of Materials, 27(3), 735–743.

By: O. Isayev, D. Fourches, E. Muratov, C. Oses, K. Rasch, A. Tropsha, S. Curtarolo

Source: Crossref
Added: February 24, 2020

2015 journal article

Predicting chemically-induced skin reactions. Part II: QSAR models of skin permeability and the relationships between skin permeability and skin sensitization

Toxicology and Applied Pharmacology, 284(2), 273–280.

By: V. Alves, E. Muratov, D. Fourches, J. Strickland, N. Kleinstreuer, C. Andrade, A. Tropsha

Source: Crossref
Added: February 24, 2020

2015 journal article

Drug Side Effect Profiles as Molecular Descriptors for Predictive Modeling of Target Bioactivity

Molecular Informatics, 34(2-3), 160–170.

By: N. Baker, D. Fourches & A. Tropsha

Source: Crossref
Added: February 24, 2020

2015 journal article

Genome-wide association meta-analysis identifies five modifier loci of lung disease severity in cystic fibrosis

Nature Communications, 6(1).

By: H. Corvol, S. Blackman, P. Boëlle, P. Gallins, R. Pace, J. Stonebraker, F. Accurso, A. Clement ...

Source: Crossref
Added: February 24, 2020

2015 journal article

Prediction of human population responses to toxic compounds by a collaborative competition

Nature Biotechnology, 33(9), 933–940.

By: F. Eduati, L. Mangravite, T. Wang, H. Tang, J. Bare, R. Huang, T. Norman, M. Kellen ...

Source: Crossref
Added: February 24, 2020

2015 journal article

Erratum: Prediction of human population responses to toxic compounds by a collaborative competition

Nature Biotechnology, 33(10), 1109–1109.

By: F. Eduati, L. Mangravite, T. Wang, H. Tang, J. Bare, R. Huang, T. Norman, M. Kellen ...

Source: Crossref
Added: February 24, 2020

2015 journal article

Identification of Novel Gene Targets and Putative Regulators of Arsenic-Associated DNA Methylation in Human Urothelial Cells and Bladder Cancer

Chemical Research in Toxicology, 28(6), 1144–1155.

By: J. Rager, S. Tilley, S. Tulenko, L. Smeester, P. Ray, A. Yosim, J. Currier, M. Ishida ...

Source: Crossref
Added: February 24, 2020

2015 journal article

Pharmacometabolomic Assessments of Atenolol and Hydrochlorothiazide Treatment Reveal Novel Drug Response Phenotypes

CPT: Pharmacometrics & Systems Pharmacology, 4(11), 669–679.

By: D. Rotroff, M. Shahin, S. Gurley, H. Zhu, A. Motsinger-Reif, M. Meisner, A. Beitelshees, O. Fiehn ...

Source: Crossref
Added: February 24, 2020

2015 journal article

Erratum: Corrigendum: Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance

Nature Genetics, 47(6), 690–690.

By: J. Crowley, V. Zhabotynsky, W. Sun, S. Huang, I. Pakatci, Y. Kim, J. Wang, A. Morgan ...

Source: Crossref
Added: February 24, 2020

2015 journal article

Analyses of allele-specific gene expression in highly divergent mouse crosses identifies pervasive allelic imbalance

Nature Genetics, 47(4), 353–360.

By: J. Crowley, V. Zhabotynsky, W. Sun, S. Huang, I. Pakatci, Y. Kim, J. Wang, A. Morgan ...

Source: Crossref
Added: February 24, 2020

2015 book

Exploiting solved genomes of plant-parasitic nematodes to understand parasitism

In Advances in Botanical Research (Vol. 73, pp. 241–258).

By: D. Bird, V. Williamson & C. Opperman

Source: ORCID
Added: January 30, 2020

2015 journal article

Molecular cloning, functional characterization, and evolutionary analysis of vitamin D receptors isolated from basal vertebrates

PLoS ONE, 10(4).

By: E. Kollitz, G. Zhang, M. Hawkins, G. Whitfield, D. Reif & S. Kullman

Source: ORCID
Added: May 14, 2019

2015 journal article

Food for Thought...: Toxicity testing in the 21st century beyond environmental chemicals

Altex, 32(3), 171–181.

By: C. Rovida, S. Asakura, M. Daneshian, H. Hofman-Huether, M. Leist, L. Meunier, D. Reif, A. Rossi ...

Source: ORCID
Added: May 14, 2019

2015 book

Embracing complexity: Searching for gene-gene and gene environment interactions in genetic epidemiology

In Genomics and Proteomics: Principles, Technologies, and Applications (pp. 19–58).

By: A. Motsinger & D. Reif

Source: ORCID
Added: May 14, 2019

2015 journal article

Data-driven asthma endotypes defined from blood biomarker and gene expression data

PLoS ONE, 10(2).

By: B. George, D. Reif, J. Gallagher, C. Williams-DeVane, B. Heidenfelder, E. Hudgens, W. Jones, L. Neas, E. Cohen Hubal, S. Edwards

Source: ORCID
Added: May 14, 2019