Bioinformatics

Interdisciplinary Programs

Works Published in 2021

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2021 article

A critical overview of computational approaches employed for COVID-19 drug discovery

Muratov, E. N., Amaro, R., Andrade, C. H., Brown, N., Ekins, S., Fourches, D., … Tropsha, A. (2021, July 2). CHEMICAL SOCIETY REVIEWS.

By: E. Muratov, R. Amaro, C. Andrade, N. Brown, S. Ekins, D. Fourches, O. Isayev, D. Kozakov ...

Source: Web Of Science
Added: July 26, 2021

2021 journal article

Data Processing Workflow to Identify Structurally Related Compounds in Petroleum Substances Using Ion Mobility Spectrometry-Mass Spectrometry

ENERGY & FUELS.

By: A. Roman-Hubers, A. Cordova, N. Aly, T. McDonald, D. Lloyd, F. Wright, E. Baker, W. Chiu, I. Rusyn

Source: Web Of Science
Added: July 26, 2021

2021 journal article

Multiomic Big Data Analysis Challenges: Increasing Confidence in the Interpretation of Artificial Intelligence Assessments

ANALYTICAL CHEMISTRY.

Source: Web Of Science
Added: July 19, 2021

2021 journal article

Leveraging high-throughput screening data, deep neural networks, and conditional generative adversarial networks to advance predictive toxicology

PLOS Computational Biology, 17(7), e1009135.

By: A. Green, M. Mohlenkamp, J. Das, M. Chaudhari, L. Truong, R. Tanguay, D. Reif

Ed(s): V. Hatzimanikatis

Source: ORCID
Added: July 5, 2021

2021 journal article

CATMoS: Collaborative Acute Toxicity Modeling Suite

ENVIRONMENTAL HEALTH PERSPECTIVES.

By: K. Mansouri, A. Karmaus, J. Fitzpatrick, G. Patlewicz, P. Pradeep, D. Alberga, N. Alepee, T. Allen ...

Source: Web Of Science
Added: June 28, 2021

2021 journal article

Concurrent Evaluation of Mortality and Behavioral Responses: A Fast and Efficient Testing Approach for High-Throughput Chemical Hazard Identification

Frontiers in Toxicology, 3.

By: P. Thunga, L. Truong, R. Tanguay & D. Reif

Source: ORCID
Added: June 22, 2021

2021 journal article

Knockoff boosted tree for model-free variable selection

BIOINFORMATICS.

Source: Web Of Science
Added: June 21, 2021

2021 journal article

Toward genetic modification of plant-parasitic nematodes: delivery of macromolecules to adults and expression of exogenous mRNA in second stage juveniles

G3-GENES GENOMES GENETICS, 2.

By: O. Kranse, H. Beasley, S. Adams, A. Pires-daSilva, C. Bell, C. Lilley, P. Urwin, D. Bird ...

Sources: Web Of Science, ORCID
Added: June 10, 2021

2021 article

Extending the lymphoblastoid cell line model for drug combination pharmacogenomics

Green, A. J., Anchang, B., Akhtari, F. S., Reif, D. M., & Motsinger-Reif, A. (2021, May 28). PHARMACOGENOMICS, Vol. 5.

Sources: Web Of Science, ORCID
Added: May 29, 2021

2021 article

Environmental impacts of Hurricane Florence flooding in eastern North Carolina: temporal analysis of contaminant distribution and potential human health risks

JOURNAL OF EXPOSURE SCIENCE AND ENVIRONMENTAL EPIDEMIOLOGY.

By: N. Aly, G. Casillas, Y. Luo, T. McDonald, T. Wade, R. Zhu, G. Newman, D. Lloyd ...

Source: Web Of Science
Added: May 24, 2021

2021 journal article

SMILES Pair Encoding: A Data-Driven Substructure Tokenization Algorithm for Deep Learning

JOURNAL OF CHEMICAL INFORMATION AND MODELING, 61(4), 1560–1569.

By: X. Li & D. Fourches

Source: Web Of Science
Added: May 24, 2021

2021 journal article

Race and smoking status associated with paclitaxel drug response in patient-derived lymphoblastoid cell lines

PHARMACOGENETICS AND GENOMICS, 31(2), 48–52.

By: F. Akhtari, T. Havener, D. Hertz, J. Ash, A. Larson, L. Carey, H. McLeod, A. Motsinger-Reif

Source: Web Of Science
Added: May 10, 2021

2021 journal article

The VKORC1 ER-luminal loop mutation (Leu76Pro) leads to a significant resistance to warfarin in black rats (Rattus rattus)

PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY, 173.

By: K. Takeda, Y. Ikenaka, D. Fourches, K. Tanaka, S. Nakayama, D. Triki, X. Li, M. Igarashi, T. Tanikawa, M. Ishizuka

Source: Web Of Science
Added: April 26, 2021

2021 review

Uncovering Evidence for Endocrine-Disrupting Chemicals That Elicit Differential Susceptibility through Gene-Environment Interactions

[Review of ]. TOXICS, 9(4).

By: D. Wallis, L. Truong, J. La Du, R. Tanguay & D. Reif

Sources: ORCID, Web Of Science
Added: April 7, 2021

2021 journal article

Relationships between constituents of energy drinks and beating parameters in human induced pluripotent stem cell (iPSC)-Derived cardiomyocytes

FOOD AND CHEMICAL TOXICOLOGY, 149.

By: Y. Luo, Z. Chen, A. Blanchette, Y. Zhou, F. Wright, E. Baker, W. Chiu, I. Rusyn

Source: Web Of Science
Added: April 5, 2021

2021 personal communication

The COVID-19 Pandemic Vulnerability Index (PVI) Dashboard: Monitoring County-Level Vulnerability Using Visualization, Statistical Modeling, and Machine Learning

Marvel, S. W., House, J. S., Wheeler, M., Song, K., Zhou, Y.-H., Wright, F. A., … Reif, D. M. (2021, January).

By: S. Marvel, J. House, M. Wheeler, K. Song, Y. Zhou, F. Wright, W. Chiu, I. Rusyn, A. Motsinger-Reif, D. Reif

Sources: Web Of Science, ORCID
Added: March 22, 2021

2021 journal article

Grouping of UVCB Substances with New Approach Methodologies (NAMs) Data

ALTEX-ALTERNATIVES TO ANIMAL EXPERIMENTATION, 38(1), 123–137.

By: J. House, F. Grimm, W. Klaren, A. Dalzell, S. Kuchi, S. Zhang, K. Lenz, P. Boogaard ...

Source: Web Of Science
Added: March 15, 2021

2021 journal article

Risk Characterization of Environmental Samples Using In Vitro Bioactivity and Polycyclic Aromatic Hydrocarbon Concentrations Data

TOXICOLOGICAL SCIENCES, 179(1), 108–120.

By: Z. Chen, D. Lloyd, Y. Zhou, W. Chiu, F. Wright & I. Rusyn

Source: Web Of Science
Added: March 15, 2021

2021 journal article

Development of a Pandemic Awareness STEM Outreach Curriculum: Utilizing a Computational Thinking Taxonomy Framework

EDUCATION SCIENCES, 11(3).

By: P. Gilchrist, A. Alexander, A. Green, F. Sanders, A. Hooker & D. Reif

Sources: ORCID, Web Of Science
Added: March 9, 2021

2021 journal article

Comparative Toxicogenomics Database (CTD): update 2021

NUCLEIC ACIDS RESEARCH, 49(D1), D1138–D1143.

Source: Web Of Science
Added: February 8, 2021