Works Published in 2022

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Displaying works 1 - 20 of 31 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2022 journal article

The AGMK1-9T7 cell model of neoplasia: Evolution of DNA copy-number aberrations and miRNA expression during transition from normal to metastatic cancer cells

PLOS ONE, 17(10).

By: A. Lewisโ€‰*, R. Thomas*, M. Breen*, K. Peden*, B. Teferedegne*, G. Foseh*, A. Motsinger-Reif n, D. Rotroff n, G. Lewis

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Animals; Humans; Chlorocebus aethiops; MicroRNAs / genetics; MicroRNAs / metabolism; Neoplasms / genetics; Carcinogenesis / genetics; DNA Copy Number Variations / genetics; Chromosome Aberrations; Neoplasms, Second Primary / genetics; DNA; Gene Expression Regulation, Neoplastic; Gene Expression Profiling
Source: Web Of Science
Added: February 27, 2023

2022 journal article

MagicalRsq: Machine-learning-based genotype imputation quality calibration

AMERICAN JOURNAL OF HUMAN GENETICS, 109(11), 1986โ€“1997.

By: Q. Sunโ€‰*, Y. Yangโ€‰*, J. Rosen*, M. Jiangโ€‰*, J. Chenโ€‰*, W. Liuโ€‰*, J. Wenโ€‰*, L. Raffield* ...

co-author countries: Italy ๐Ÿ‡ฎ๐Ÿ‡น United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Humans; Genome-Wide Association Study / methods; Polymorphism, Single Nucleotide / genetics; Calibration; Genotype; Machine Learning
Source: Web Of Science
Added: January 17, 2023

2022 article

TCDD alters essential transcriptional regulators of osteogenic differentiation in multipotent mesenchymal stem cells

Watson, A. L. T. D., Carmona Baez, A., Jima, D., Reif, D., Ding, J., Roberts, R., & Kullman, S. W. (2022, November 12). TOXICOLOGICAL SCIENCES, Vol. 11.

co-author countries: Canada ๐Ÿ‡จ๐Ÿ‡ฆ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: mesenchymal stem cell; AhR; cell differentiation
MeSH headings : Humans; Osteogenesis / genetics; Polychlorinated Dibenzodioxins / toxicity; Cell Differentiation; Fibroblast Growth Factors / metabolism; Mesenchymal Stem Cells / metabolism; Cells, Cultured; Osteoblasts
Sources: Web Of Science, ORCID
Added: December 19, 2022

2022 journal article

Utilizing a Population-Genetic Framework to Test for Gene-Environment Interactions between Zebrafish Behavior and Chemical Exposure

TOXICS, 10(12).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: gene-environment interaction; chemical risk-assessment; zebrafish behavior; toxicity screening
Sources: ORCID, Web Of Science
Added: December 10, 2022

2022 article

Assessing the Nucleotide-Level Impact of Spaceflight Stress using RNA-Sequencing Data

Knight, M. S., Doherty, C. J., & Nielsen, D. M. (2022, December 2).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Source: ORCID
Added: December 7, 2022

2022 journal article

Identification and single-base gene-editing functional validation of a cis-EPO variant as a genetic predictor for EPO-increasing therapies

AMERICAN JOURNAL OF HUMAN GENETICS, 109(9), 1638โ€“1652.

co-author countries: United Kingdom of Great Britain and Northern Ireland ๐Ÿ‡ฌ๐Ÿ‡ง Italy ๐Ÿ‡ฎ๐Ÿ‡น Netherlands ๐Ÿ‡ณ๐Ÿ‡ฑ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Anemia / drug therapy; Anemia / genetics; Coronary Artery Disease / genetics; Genome-Wide Association Study; Humans; Mendelian Randomization Analysis; Myocardial Infarction / genetics; Renal Insufficiency, Chronic / genetics
Source: Web Of Science
Added: November 21, 2022

2022 journal article

Pleiotropic modifiers of age-related diabetes and neonatal intestinal obstruction in cystic fibrosis

AMERICAN JOURNAL OF HUMAN GENETICS, 109(10), 1894โ€“1908.

By: M. Aksitโ€‰*, H. Lingโ€‰*, R. Pace*, K. Raraighโ€‰*, F. Onchiri, A. Faino, K. Pagelโ€‰*, E. Pugh* ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Cystic Fibrosis / complications; Cystic Fibrosis / genetics; Cystic Fibrosis Transmembrane Conductance Regulator / genetics; Diabetes Mellitus / genetics; Genome-Wide Association Study; Humans; Infant, Newborn; Infant, Newborn, Diseases; Intestinal Obstruction / complications; Intestinal Obstruction / genetics
Source: Web Of Science
Added: November 21, 2022

2022 journal article

A cross-species approach using an in vivo evaluation platform in mice demonstrates that sequence variation in human RABEP2 modulates ischemic stroke outcomes

AMERICAN JOURNAL OF HUMAN GENETICS, 109(10), 1814โ€“1827.

By: H. Leeโ€‰*, D. Kwon, D. Aylor* & D. Marchuk

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Alleles; Animals; Brain / metabolism; Chromosome Mapping; Humans; Ischemic Stroke; Mice; Vesicular Transport Proteins / genetics; rab GTP-Binding Proteins / genetics; rab GTP-Binding Proteins / metabolism
Source: Web Of Science
Added: November 21, 2022

2022 article

Comparative Toxicogenomics Database (CTD): update 2023

Davis, A. P., Wiegers, T. C., Johnson, R. J., Sciaky, D., Wiegers, J., & Mattingly, C. J. (2022, September 28). NUCLEIC ACIDS RESEARCH.

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Humans; Toxicogenetics; Databases, Factual; Phenotype
Source: Web Of Science
Added: October 11, 2022

2022 journal article

Wildfires and extracellular vesicles: Exosomal MicroRNAs as mediators of cross-tissue cardiopulmonary responses to biomass smoke

ENVIRONMENT INTERNATIONAL, 167.

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Exosomes; Extracellular vesicles; Environmental exposures; Mixtures; Systems biology; Wildfires
MeSH headings : Animals; Biomass; Extracellular Vesicles / metabolism; Female; Hypoxia; Mice; MicroRNAs; Soil; Wildfires
Sources: Web Of Science, ORCID
Added: October 3, 2022

2022 journal article

Clomifene and Assisted Reproductive Technology in Humans Are Associated with Sex-Specific Offspring Epigenetic Alterations in Imprinted Control Regions

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 23(18).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: differentially methylated regions; adverse offspring outcomes; infertility
MeSH headings : Child; Clomiphene; DNA Methylation; Female; Genomic Imprinting; Humans; Male; Reproductive Techniques, Assisted / adverse effects; Retrospective Studies
Source: Web Of Science
Added: October 3, 2022

2022 article

Impacts of Gestational FireMaster 550 (FM 550) Exposure on the Neonatal Cortex are Sex Specific and Largely Attributable to the Organophosphate Esters

Witchey, S. K., Doyle, M. G., Fredenburg, J. D., St Armour, G., Horman, B., Odenkirk, M. T., โ€ฆ Patisaul, H. B. (2022, September 8). NEUROENDOCRINOLOGY.

By: S. Witchey n, M. Doyle n, J. Fredenburg n, G. St Armour n, B. Horman n, M. Odenkirk n, D. Aylor n, E. Baker nโ€‰, H. Patisaul nโ€‰

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
Source: Web Of Science
Added: September 26, 2022

2022 journal article

A resource for integrated genomic analysis of the human liver

SCIENTIFIC REPORTS, 12(1).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Bayes Theorem; Genome-Wide Association Study / methods; Genomics; Humans; Liver; Polymorphism, Single Nucleotide; Quantitative Trait Loci
Source: Web Of Science
Added: September 19, 2022

2022 journal article

A Population-Based Human In Vitro Approach to Quantify Inter-Individual Variability in Responses to Chemical Mixtures

TOXICS, 10(8).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: population-wide; inter-individual variability; toxicodynamics; chemical mixtures; defined mixtures; human health risk assessment; uncertainty factors; genome-wide association study
Source: Web Of Science
Added: September 6, 2022

2022 journal article

Grouping of UVCB Substances with Dose-Response Transcriptomics Data from Human Cell-Based Assays

ALTEX-ALTERNATIVES TO ANIMAL EXPERIMENTATION, 39(3), 388โ€“404.

By: J. House nโ€‰, F. Grimm*, W. Klaren*, A. Dalzell*, S. Kuchi*, S. Zhangโ€‰*, K. Lenz*, P. Boogaard ...

co-author countries: Belgium ๐Ÿ‡ง๐Ÿ‡ช Germany ๐Ÿ‡ฉ๐Ÿ‡ช United Kingdom of Great Britain and Northern Ireland ๐Ÿ‡ฌ๐Ÿ‡ง Netherlands ๐Ÿ‡ณ๐Ÿ‡ฑ United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Biological Assay; Endothelial Cells; Humans; Induced Pluripotent Stem Cells; Petroleum; Transcriptome
Source: Web Of Science
Added: August 29, 2022

2022 journal article

Model systems and organisms for addressing inter- and intra-species variability in risk assessment

REGULATORY TOXICOLOGY AND PHARMACOLOGY, 132.

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
MeSH headings : Animals; Mice; Models, Theoretical; Risk Assessment; Toxicokinetics; Uncertainty
Source: Web Of Science
Added: August 15, 2022

2022 journal article

Correlation Analysis of Variables From the Atherosclerosis Risk in Communities Study

FRONTIERS IN PHARMACOLOGY, 13.

By: M. Mandalโ€‰*, J. Levy, C. Ivesโ€‰*, S. Hwang*, Y. Zhouโ€‰ n, A. Motsinger-Reif*, H. Panโ€‰*, W. Hugginsโ€‰* ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: cluster analysis; systems biology; meta-analysis as topic; ARIC; cardiovascular disease
Source: Web Of Science
Added: August 8, 2022

2022 journal article

Confidence bands and hypothesis tests for hit enrichment curves

JOURNAL OF CHEMINFORMATICS, 14(1).

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Virtual screening; Enrichment factor; Lift curve; Early enrichment; Ranking algorithm; Empirical process
Source: Web Of Science
Added: August 8, 2022

2022 article

TwinEQTL: ultrafast and powerful association analysis for eQTL and GWAS in twin studies

Xia, K., Shabalin, A. A., Yin, Z., Chung, W., Sullivan, P. F., Wright, F. A., โ€ฆ Zou, F. (2022, June 11). GENETICS.

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Twin; eQTL; GWAS
MeSH headings : Humans; Gene Frequency; Genome-Wide Association Study / methods; Linear Models; Polymorphism, Single Nucleotide; Quantitative Trait Loci
Source: Web Of Science
Added: July 11, 2022

2022 article

Genomic map of candidate human imprint control regions: the imprintome

Jima, D. D., Skaar, D. A., Planchart, A., Motsinger-Reif, A., Cevik, S. E., Park, S. S., โ€ฆ Hoyo, C. (2022, June 25). EPIGENETICS.

By: D. Jima n, D. Skaar n, A. Planchart nโ€‰, A. Motsinger-Reif n, S. Cevik n, S. Park n, M. Cowley nโ€‰, F. Wright n ...

co-author countries: United States of America ๐Ÿ‡บ๐Ÿ‡ธ
author keywords: Epigenetics; genomic imprinting; foetal origins; whole genome; methylation; imprint control regions
MeSH headings : Adult; Humans; Genomic Imprinting; DNA Methylation; Chromosome Mapping; Alleles; Genomics
Source: Web Of Science
Added: July 11, 2022

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