Genetics - 2016

Scott, M. J., & Benedict, M. Q. (2016). Concept and History of Genetic Control. https://doi.org/10.1016/B978-0-12-800246-9.00002-8

Concha, C., Palavesam, A., Guerrero, F. D., Sagel, A., Li, F., Osborne, J. A., … others. (2016). A transgenic male-only strain of the New World screwworm for an improved control program using the sterile insect technique. BMC Biology, 14(1), 72.

Merchante, C., Brumós, J., Yun, J., Stepanova, A., & Alonso, J. (2016). Hormone-Mediated Gene-Specific Translation Regulation. Retrieved from http://hdl.handle.net/10630/11885

Merchante, C., Hu, Q., Heber, S., Alonso, J., & Stepanova, A. (2016). A Ribosome Footprinting Protocol for Plants. BIO-PROTOCOL, 6(21). https://doi.org/10.21769/bioprotoc.1985

Carbone, M. A., Yamamoto, A., Huang, W., Lyman, R. A., Meadors, T. B., Yamamoto, R., … Mackay, T. F. C. (2016). Genetic architecture of natural variation in visual senescence in Drosophila. Proceedings of the National Academy of Sciences, 113(43), E6620–E6629. https://doi.org/10.1073/PNAS.1613833113

Wear, E. E., Concia, L., Brooks, A. M., Markham, E. A., Lee, T.-J., Allen, G. C., … Hanley-Bowdoin, L. (2016). Isolation of Plant Nuclei at Defined Cell Cycle Stages Using EdU Labeling and Flow Cytometry. In Methods in Molecular Biology (pp. 69–86). https://doi.org/10.1007/978-1-4939-3142-2_6

Gong, X., Flores-Vergara, M. A., Hong, J. H., Chu, H., Lim, J., Franks, R. G., … Xu, J. (2016). SEUSS integrates gibberellin signaling with transcriptional inputs from the SHR-SCR-SCL3 module to regulate middle cortex formation in the Arabidopsis root. Plant Physiology. Retrieved from http://europepmc.org/abstract/med/26818732

Liu, X., Zhang, J., Abuahmad, A., Franks, R. G., Xie, D. Y., Xiang, Q. Y., & Planta. (2016). Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering. Retrieved from http://europepmc.org/abstract/med/26825444

Franks, R. G. (2016). Histological Analysis of the Arabidopsis Gynoecium and Ovules Using Chloral Hydrate Clearing and Differential Interference Contrast Light Microscopy. OOGENESIS: METHODS AND PROTOCOLS, Vol. 1457, pp. 1–7. https://doi.org/10.1007/978-1-4939-3795-0_1

Heiken, J., Schwarz, M. R., Davis, E. L., & Opperman, C. H. (2016). The Effects of fluopyram on nematodes. Journal of Nematology, 48(4), 330–331.

Galle, G., Opperman, C. H., & Kerns, J. P. (2016). Population dynamics of Belonolaimus longicaudatus in Central North Carolina. Journal of Nematology, 48(4), 322–323.

Jeong, K. Y., Nelson, P. V., Niedziela, C. E., Jr., & Dickey, D. A. (2016). Effect of Plant Species, Fertilizer Acidity/Basicity, and Fertilizer Concentration on pH of Soilless Root Substrate. HORTSCIENCE, 51(12), 1596–1601. https://doi.org/10.21273/hortsci11237-16

List, G., Mashayekhi, M., Bertini, R. L., & Nevers, B. (2016). Development of a Transportation System Simulation Manual Framework From Theory to Practice. TRANSPORTATION RESEARCH RECORD, (2561), 45–52. https://doi.org/10.3141/2561-06

Stepanova, A. N., & Alonso, J. M. (2016, December 5). Cutting Out the Middle Man in Light-Hormone Interactions. DEVELOPMENTAL CELL, Vol. 39, pp. 524–526. https://doi.org/10.1016/j.devcel.2016.11.013

Szitenberg, A., Cha, S., Opperman, C. H., Bird, D. M., Blaxter, M. L., & Lunt, D. H. (2016). Genetic Drift, Not Life History or RNAi, Determine Long-Term Evolution of Transposable Elements. GENOME BIOLOGY AND EVOLUTION, 8(9), 2964–2978. https://doi.org/10.1093/gbe/evw208

Mickelson-Young, L., Wear, E., Mulvaney, P., Lee, T.-J., Szymanski, E. S., Allen, G., … Thompson, W. (2016). A flow cytometric method for estimating S-phase duration in plants. JOURNAL OF EXPERIMENTAL BOTANY, 67(21), 6077–6087. https://doi.org/10.1093/jxb/erw367

O'Flaherty, S., & Klaenhammer, T. R. (2016). Multivalent Chromosomal Expression of the Clostridium botulinum Serotype A Neurotoxin Heavy-Chain Antigen and the Bacillus anthracis Protective Antigen in Lactobacillus acidophilus. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(20), 6091–6101. https://doi.org/10.1128/aem.01533-16

Stepanova, A. N., & Alonso, J. M. (2016, September 27). Auxin catabolism unplugged: Role of IAA oxidation in auxin homeostasis. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 113, pp. 10742–10744. https://doi.org/10.1073/pnas.1613506113

Xiong, J. S., McKeand, S. E., Isik, F., Wegrzyn, J., Neale, D. B., Zeng, Z.-B., … Whetten, R. W. (2016). Quantitative trait loci influencing forking defects in an outbred pedigree of loblolly pine. BMC GENETICS, 17. https://doi.org/10.1186/s12863-016-0446-6

Douglas, G. L., Azcarate-Peril, M. A., & Klaenhammer, T. R. (2016). Genomic evolution of lactic acid bacteria: From single gene function to the pan-genome. Biotechnology of Lactic Acid Bacteria: Novel Applications, 2nd Edition, 32–54. https://doi.org/10.1002/9781118868386.ch3

Kuzu, G., Kaye, E. G., Chery, J., Siggers, T., Yang, L., Dobson, J. R., … Larschan, E. (2016). Expansion of GA Dinucleotide Repeats Increases the Density of CLAMP Binding Sites on the X-Chromosome to Promote Drosophila Dosage Compensation. PLOS GENETICS, 12(7). https://doi.org/10.1371/journal.pgen.1006120

Johnson, B. R., & Klaenhammer, T. R. (2016). AcmB Is an S-Layer-Associated beta-N-Acetylglucosaminidase and Functional Autolysin in Lactobacillus acidophilus NCFM. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(18), 5687–5697. https://doi.org/10.1128/aem.02025-16

Concha, C., Palavesam, A., Guerrero, F. D., Sagel, A., Li, F., Osborne, J. A., … Scott, M. J. (2016). A transgenic male-only strain of the New World screwworm for an improved control program using the sterile insect technique. BMC Biology, 14(1). https://doi.org/10.1186/s12915-016-0296-8

Hymes, J. P., & Klaenhammer, T. R. (2016). [Review of Stuck in the Middle: Fibronectin-Binding Proteins in Gram-Positive Bacteria]. FRONTIERS IN MICROBIOLOGY, 7. https://doi.org/10.3389/fmicb.2016.01504

Schwartz, S., Truglio, M., Scott, M. J., & Fitzsimons, H. L. (2016). Long-Term Memory in<i>Drosophila</i>Is Influenced by Histone Deacetylase HDAC4 Interacting with SUMO-Conjugating Enzyme Ubc9. Genetics, 203(3), 1249–1264. https://doi.org/10.1534/genetics.115.183194

Hu, Q., Merchante, C., STEPANOVA, A. N. N. A., Alonso, J., & Heber, S. (2016). Genome-Wide Search for Translated Upstream Open Reading Frames in Arabidopsis Thaliana. IEEE Transactions on Nanobioscience, 15(2), 150–159. https://doi.org/10.1109/TNB.2016.2516950

Hunter, C. M., Robinson, M. C., Aylor, D. L., & Singh, N. D. (2016). Genetic Background, Maternal Age, and Interaction Effects Mediate Rates of Crossing Over in Drosophila melanogaster Females. G3-GENES GENOMES GENETICS, 6(5), 1409–1416. https://doi.org/10.1534/g3.116.027631

Gerken, A. R., Mackay, T. F. C., & Morgan, T. J. (2016). Artificial selection on chill-coma recovery time in Drosophila melanogaster: Direct and correlated responses to selection. JOURNAL OF THERMAL BIOLOGY, 59, 77–85. https://doi.org/10.1016/j.jtherbio.2016.04.004

Anstead, C. A., Batterham, P., Korhonen, P. K., Young, N. D., Hall, R. S., Bowles, V. M., … Gasser, R. B. (2016). A blow to the fly — Lucilia cuprina draft genome and transcriptome to support advances in biology and biotechnology. Biotechnology Advances, 34(5), 605–620. https://doi.org/10.1016/j.biotechadv.2016.02.009

Hymes, J. P., Johnson, B. R., Barrangou, R., & Klaenhammer, T. R. (2016). Functional Analysis of an S-Layer-Associated Fibronectin-Binding Protein in Lactobacillus acidophilus NCFM. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(9), 2676–2685. https://doi.org/10.1128/aem.00024-16

Celebioglu, H. U., Ejby, M., Majumder, A., Kobler, C., Goh, Y. J., Thorsen, K., … Svensson, B. (2016). Differential proteome and cellular adhesion analyses of the probiotic bacterium Lactobacillus acidophilus NCFM grown on raffinose - an emerging prebiotic. PROTEOMICS, 16(9), 1361–1375. https://doi.org/10.1002/pmic.201500212

Ndunguru, J., De Leon, L., Doyle, C. D., Sseruwagi, P., Plata, G., Legg, J. P., … Hanley-Bowdoin, L. (2016). Two Novel DNAs That Enhance Symptoms and Overcome CMD2 Resistance to Cassava Mosaic Disease. JOURNAL OF VIROLOGY, 90(8), 4160–4173. https://doi.org/10.1128/jvi.02834-15

Villarino, G. H., Hu, Q., Manrique, S., Flores-Vergara, M., Sehra, B., Robles, L., … Franks, R. G. (2016). Transcriptomic Signature of the SHATTERPROOF2 Expression Domain Reveals the Meristematic Nature of Arabidopsis Gynoecial Medial Domain. PLANT PHYSIOLOGY, 171(1), 42–61. https://doi.org/10.1104/pp.15.01845

Gong, X., Flores-Vergara, M. A., Hong, J. H., Chu, H., Lim, J., Franks, R. G., … physiology, P. (2016). SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root. PLANT PHYSIOLOGY, 170(3), 1675–1683. https://doi.org/10.1104/pp.15.01501

Riedl, C. A. L., Oster, S., Busto, M., Mackay, T. F. C., & Sokolowski, M. B. (2016). Natural variability in Drosophila larval and pupal NaCl tolerance. JOURNAL OF INSECT PHYSIOLOGY, 88, 15–23. https://doi.org/10.1016/j.jinsphys.2016.02.007

Lee, H. J., Kishino, H., Rodrigue, N., & Thorne, J. L. (2016). Grouping substitution types into different relaxed molecular clocks. Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences, 371(1699).

Oneal, E., Willis, J. H., & Franks, R. G. (2016). Disruption of endosperm development is a major cause of hybrid seed inviability between Mimulus guttatus and Mimulus nudatus. NEW PHYTOLOGIST, 210(3), 1107–1120. https://doi.org/10.1111/nph.13842

Liu, X., Zhang, J., Abuahmad, A., Franks, R. G., Xie, D.-Y., & Xiang, Q.-Y. (2016). Analysis of two TFL1 homologs of dogwood species (Cornus L.) indicates functional conservation in control of transition to flowering. PLANTA, 243(5), 1129–1141. https://doi.org/10.1007/s00425-016-2466-x

Ji, X., Griffing, A., & Thorne, J. L. (2016). A Phylogenetic Approach Finds Abundant Interlocus Gene Conversion in Yeast. MOLECULAR BIOLOGY AND EVOLUTION, 33(9), 2469–2476. https://doi.org/10.1093/molbev/msw114

Provart, N. J., Alonso, J., Assmann, S. M., Bergmann, D., Brady, S. M., Brkljacic, J., … Nemhauser, J. (2016). [Review of 50 years of Arabidopsis research: Highlights and future directions]. New Phytologist, 209(3), 921–944.

Skelly, D. A., Magwene, P. M., & Stone, E. A. (2016). Sporadic, Global Linkage Disequilibrium Between Unlinked Segregating Sites. GENETICS, 202(2), 427-+. https://doi.org/10.1534/genetics.115.177816

Durmaz, E., Hu, Y., Aroian, R. V., & Klaenhammer, T. R. (2016). Intracellular and Extracellular Expression of Bacillus thuringiensis Crystal Protein Cry5B in Lactococcus lactis for Use as an Anthelminthic. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(4), 1286–1294. https://doi.org/10.1128/aem.02365-15

Scott, M. J., & Benedict, M. Q. (2016). Concept and history of genetic control. Genetic Control of Malaria and Dengue, 31–54.

Li, F., & Scott, M. J. (2016). CRISPR/Cas9-mediated mutagenesis of the white and Sex lethal loci in the invasive pest, Drosophila suzukii. Biochemical and Biophysical Research Communications, 469(4), 911–916. https://doi.org/10.1016/j.bbrc.2015.12.081

Stone, E. A., & Singh, N. D. (2016, February). Bias-Variance Tradeoffs in Recombination Rate Estimation. https://doi.org/10.1534/genetics.115.185561

Vang, L. E., Opperman, C. H., Schwarz, M. R., & Davis, E. L. (2016). Spirotetramat causes an arrest of nematode juvenile development. NEMATOLOGY, 18, 121–131. https://doi.org/10.1163/15685411-00002948

Cao, J., Guenther, R. H., Sit, T. L., Lommel, S. A., Opperman, C. H., & Willoughby, J. A. (2016). Development of abamectin loaded lignocellulosic matrices for the controlled release of nematicide for crop protection. CELLULOSE, 23(1), 673–687. https://doi.org/10.1007/s10570-015-0817-6

Johnson, B. R., Hymes, J., Sanozky-Dawes, R., Henriksen, E. D. C., Barrangou, R., & Klaenhammer, T. R. (2016). Conserved S-Layer-Associated Proteins Revealed by Exoproteomic Survey of S-Layer-Forming Lactobacilli. APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 82(1), 134–145. https://doi.org/10.1128/aem.01968-15

Linger, R. J., Belikoff, E. J., Yan, Y., Li, F., Wantuch, H. A., Fitzsimons, H. L., & Scott, M. J. (2016). Towards next generation maggot debridement therapy: transgenic Lucilia sericata larvae that produce and secrete a human growth factor. BMC Biotechnology, 16(1). https://doi.org/10.1186/s12896-016-0263-z