Genetics - 2020

Long, K. C., Alphey, L., Annas, G. J., Bloss, C. S., Campbell, K. J., Champer, J., … Akbari, O. S. (2020). Core commitments for field trials of gene drive organisms. Science, 370(6523), 1417–1419. https://doi.org/10.1126/science.abd1908

Jaffri, S. A., Yan, Y., Scott, M. J., & Schetelig, M. F. (2020). Conditional Expression Systems for Drosophila suzukii Pest Control. https://doi.org/10.1007/978-3-030-62692-1_10

Knudsen, K. E., Reid, W. R., Barbour, T. M., Bowes, L. M., Duncan, J., Philpott, E., … Scott, M. J. (2020). Genetic Variation and Potential for Resistance Development to the tTA Overexpression Lethal System in Insects. G3 Genes|Genomes|Genetics, 10(4), 1271–1281. https://doi.org/10.1534/g3.120.400990

Webster, S. H., Vella, M. R., & Scott, M. J. (2020). Development and testing of a novel killer–rescue self-limiting gene drive system in
            <i>Drosophila melanogaster. Proceedings of the Royal Society B: Biological Sciences, 287(1925), 20192994. https://doi.org/10.1098/rspb.2019.2994

Flores-Vergara, M. A., Oneal, E., Costa, M., Villarino, G., Roberts, C., Balaguer, M. A. D. L., … Franks, R. G. (2020). Developmental Analysis of Mimulus Seed Transcriptomes Reveals Functional Gene Expression Clusters and Four Imprinted, Endosperm-Expressed Genes. Frontiers in Plant Science, 11. https://doi.org/10.3389/fpls.2020.00132

Perkins, P., Stepanova, A., Alonso, J., & Heber, S. (2020). RiboSimR: A Tool for Simulation and Power Analysis of Ribo-seq Data. In I. Măndoiu, T. Murali, G. Narasimhan, S. Rajasekaran, P. Skums, & A. Zelikovsky (Eds.), Computational Advances in Bio and Medical Sciences (pp. 121–133). https://doi.org/10.1007/978-3-030-46165-2_10

Dolores Gomez, M., Barro-Trastoy, D., Fuster-Almunia, C., Tornero, P., Alonso, J. M., & Perez-Amador, M. A. (2020). Gibberellin-mediated RGA-LIKE1 degradation regulates embryo sac development in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY, 71(22), 7059–7072. https://doi.org/10.1093/jxb/eraa395

Carvalho, E. B., Sanglard, L. P., Nascimento, M., Moriel, P., Sommer, J., Merrill, M., … Serao, N. (2020, November). miRNAs explain the variation in muscle and blood transcriptomes of beef calves born from dams with or without energy restriction during late gestation. JOURNAL OF ANIMAL SCIENCE, Vol. 98, pp. 165–165. https://doi.org/10.1093/jas/skaa054.292

Harlow, K. L., Renwick, A., Shuping, S., Sommer, J., Knauer, M., & Nestor, C. (2020, November). Effects of genetic selection for early puberty on the hypothalamic-pituitary-ovarian axis in gilts. JOURNAL OF ANIMAL SCIENCE, Vol. 98, pp. 212–212. https://doi.org/10.1093/jas/skaa054.368

Concha, C., Yan, Y., Arp, A., Quilarque, E., Sagel, A., de León, A. P., … Scott, M. J. (2020). An early female lethal system of the New World screwworm, Cochliomyia hominivorax, for biotechnology-enhanced SIT. BMC Genetics, 21(S2). https://doi.org/10.1186/s12863-020-00948-x

Yan, Y., & Scott, M. J. (2020). Building a transgenic sexing
                            strain for genetic control of the Australian sheep blow fly Lucilia cuprina using two lethal
                            effectors. BMC Genetics, 21(S2). https://doi.org/10.1186/s12863-020-00947-y

Hoyer, J. S., Fondong, V. N., Dallas, M. M., Aimone, C. D., Deppong, D. O., Duffy, S., & Hanley-Bowdoin, L. (2020). Deeply Sequenced Infectious Clones of Key Cassava Begomovirus Isolates from Cameroon. MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 9(46). https://doi.org/10.1128/MRA.00802-20

Hickner, P. V., Mittapalli, O., Subramoniam, A., Sagel, A., Watson, W., Scott, M. J., … Syed, Z. (2020). Physiological and molecular correlates of the screwworm fly attraction to wound and animal odors. Scientific Reports, 10(1). https://doi.org/10.1038/s41598-020-77541-w

Morgante, F., Huang, W., Sorensen, P., Maltecca, C., & Mackay, T. F. C. (2020). Leveraging Multiple Layers of Data To Predict Drosophila Complex Traits. G3-GENES GENOMES GENETICS, 10(12), 4599–4613. https://doi.org/10.1534/g3.120.401847

Yan, Y., Williamson, M. E., & Scott, M. J. (2020). Using Moderate Transgene Expression to Improve the Genetic Sexing System of the Australian Sheep Blow Fly Lucilia cuprina. Insects, 11(11), 797. https://doi.org/10.3390/insects11110797

Burkey, K., Tisdale, R., Zobel, R., Ray, S., & Pursley, W. (2020). Interactive Effects of Elevated Ozone and Temperature on Growth and Yield of Soybean (Glycine max (L.) Merr.) under Field Conditions. AGRONOMY-BASEL, 10(11). https://doi.org/10.3390/agronomy10111803

Huang, W., Carbone, M. A., Lyman, R. F., Anholt, R. R. H., & Mackay, T. F. C. (2020). Genotype by environment interaction for gene expression in Drosophila melanogaster. NATURE COMMUNICATIONS, 11(1). https://doi.org/10.1038/s41467-020-19131-y

Zhou, C., Olukolu, B., Gemenet, D. C., Wu, S., Gruneberg, W., Cao, M. D., … Coin, L. J. M. (2020). Assembly of whole-chromosome pseudomolecules for polyploid plant genomes using outbred mapping populations. NATURE GENETICS, 52(11), 1256-+. https://doi.org/10.1038/s41588-020-00717-7

Ochola, J., Coyne, D., Cortada, L., Haukeland, S., Ng'ang'a, M., Hassanali, A., … Torto, B. (2020). Cyst nematode bio-communication with plants: implications for novel management approaches. PEST MANAGEMENT SCIENCE. https://doi.org/10.1002/ps.6105

Wear, E. E., Song, J., Zynda, G. J., Mickelson-Young, L., LeBlanc, C., Lee, T.-J., … Thompson, W. F. (2020). Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots. PLOS GENETICS, 16(10). https://doi.org/10.1371/journal.pgen.1008623

Garbutt, T. A., Konganti, K., Konneker, T., Hillhouse, A., Phelps, D., Jones, A., … Threadgill, D. W. (2020). Derivation of stable embryonic stem cell-like, but transcriptionally heterogenous, induced pluripotent stem cells from non-permissive mouse strains. MAMMALIAN GENOME, 31(9-12), 263–286. https://doi.org/10.1007/s00335-020-09849-x

Yanagawa, A., Huang, W., Yamamoto, A., Wada-Katsumata, A., Schal, C., & Mackay, T. F. C. (2020). Genetic Basis of Natural Variation in Spontaneous Grooming in Drosophila melanogaster. G3-GENES GENOMES GENETICS, 10(9), 3453–3460. https://doi.org/10.1534/g3.120.401360

Gemenet, D. C., Lindqvist-Kreuze, H., De Boeck, B., Pereira, G. de S., Mollinari, M., Zeng, Z.-B., … Campos, H. (2020). Sequencing depth and genotype quality: accuracy and breeding operation considerations for genomic selection applications in autopolyploid crops. THEORETICAL AND APPLIED GENETICS, 133(12), 3345–3363. https://doi.org/10.1007/s00122-020-03673-2

Scott, M. J., Benoit, J. B., Davis, R. J., Bailey, S. T., Varga, V., Martinson, E. O., … Skoda, S. R. (2020). Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs. Communications Biology, 3(1). https://doi.org/10.1038/s42003-020-01152-4

He, Y.-Z., Wang, Y.-M., Yin, T.-Y., Fiallo-Oliv, E., Liu, Y.-Q., Hanley-Bowdoin, L., & Wang, X.-W. (2020). A plant DNA virus replicates in the salivary glands of its insect vector via recruitment of host DNA synthesis machinery. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 117(29), 16928–16937. https://doi.org/10.1073/pnas.1820132117

Mathew, R., & Opperman, C. H. (2020). [Review of Current Insights into Migratory Endoparasitism: Deciphering the Biology, Parasitism Mechanisms, and Management Strategies of Key Migratory Endoparasitic Phytonematodes]. PLANTS-BASEL, 9(6). https://doi.org/10.3390/plants9060671

German, T. L., Lorenzen, M. D., Grubbs, N., & Whitfield, A. E. (2020). [Review of New Technologies for Studying Negative-Strand RNA Viruses in Plant and Arthropod Hosts]. MOLECULAR PLANT-MICROBE INTERACTIONS, 33(3), 382–393. https://doi.org/10.1094/MPMI-10-19-0281-FI

Brumos, J., Bobay, B. G., Clark, C. A., Alonso, J. M., & Stepanova, A. N. (2020). Structure–Function Analysis of Interallelic Complementation in ROOTY Transheterozygotes. Plant Physiology, 183(3), 1110–1125. https://doi.org/10.1104/pp.20.00310

Wheeler, E., Brooks, A. M., Concia, L., Vera, D. L., Wear, E. E., LeBlanc, C., … Hanley-Bowdoin, L. (2020). Arabidopsis DNA Replication Initiates in Intergenic, AT-Rich Open Chromatin(1)([OPEN]). PLANT PHYSIOLOGY, 183(1), 206–220. https://doi.org/10.1104/pp.19.01520

Ismayil, A., Yang, M., Haxim, Y., Wang, Y., Li, J., Han, L., … Liu, Y. (2020). Cotton leaf curl Multan virus beta C1 Protein Induces Autophagy by Disrupting the Interaction of Autophagy-Related Protein 3 with Glyceraldehyde-3-Phosphate Dehydrogenases([OPEN]). PLANT CELL, 32(4), 1124–1135. https://doi.org/10.1105/tpc.19.00759

Parker, G. A., Kohn, N., Spirina, A., McMillen, A., Huang, W., & Mackay, T. F. C. (2020). Genetic Basis of Increased Lifespan and Postponed Senescence in Drosophila melanogaster. G3-GENES GENOMES GENETICS, 10(3), 1087–1098. https://doi.org/10.1534/g3.120.401041

Larson, G., Thorne, J. L., & Schmidler, S. (2020). Incorporating Nearest-Neighbor Site Dependence into Protein Evolution Models. JOURNAL OF COMPUTATIONAL BIOLOGY, 27(3), 361–375. https://doi.org/10.1089/cmb.2019.0500

Huang, W., Campbell, T., Carbone, M. A., Jones, W. E., Unselt, D., Anholt, R. R. H., & Mackay, T. F. C. (2020). Context-dependent genetic architecture of Drosophila life span. PLOS BIOLOGY, 18(3). https://doi.org/10.1371/journal.pbio.3000645

Everett, L. J., Huang, W., Zhou, S., Carbone, M. A., Lyman, R. F., Arya, G. H., … Mackay, T. F. C. (2020). Gene expression networks in the Drosophila Genetic Reference Panel. GENOME RESEARCH, 30(3), 485–496. https://doi.org/10.1101/gr.257592.119

Zhou, S., Morgante, F., Geisz, M. S., Ma, J., Anholt, R. R. H., & Mackay, T. F. C. (2020). Systems genetics of the Drosophila metabolome. GENOME RESEARCH, 30(3), 392–405. https://doi.org/10.1101/gr.243030.118

Camp, A. A., Yun, J., Chambers, S. A., Haeba, M. H., & LeBlanc, G. A. (2020). Involvement of glutamate and serotonin transmitter systems in male sex determination in Daphnia pulex. JOURNAL OF INSECT PHYSIOLOGY, 121. https://doi.org/10.1016/j.jinsphys.2020.104015

Somarelli, J. A., Boddy, A. M., Gardner, H. L., DeWitt, S. B., Tuohy, J., Megquier, K., … Eward, W. C. (2020). Improving Cancer Drug Discovery by Studying Cancer across the Tree of Life. MOLECULAR BIOLOGY AND EVOLUTION, 37(1), 11–17. https://doi.org/10.1093/molbev/msz254

Bagley, M. C., Stepanova, A. N., Ekelof, M., Alonso, J. M., & Muddiman, D. C. (2020). Development of a relative quantification method for infrared matrix-assisted laser desorption electrospray ionization mass spectrometry imaging of Arabidopsis seedlings. RAPID COMMUNICATIONS IN MASS SPECTROMETRY, 34(6). https://doi.org/10.1002/rcm.8616

Johnson, Z. V., Moore, E. C., Wong, R. Y., Godwin, J. R., Streelman, J. T., & Roberts, R. B. (2020). Exploratory behaviour is associated with microhabitat and evolutionary radiation in Lake Malawi cichlids. ANIMAL BEHAVIOUR, 160, 121–134. https://doi.org/10.1016/j.anbehav.2019.11.006

Barro‐Trastoy, D., Carrera, E., Baños, J., Palau‐Rodríguez, J., Ruiz‐Rivero, O., Tornero, P., … Pérez‐Amador, M. A. (2020). Regulation of ovule initiation by gibberellins and brassinosteroids in tomato and Arabidopsis: two plant species, two molecular mechanisms. The Plant Journal. https://doi.org/10.1111/tpj.14684

Matute, D. R., Comeault, A. A., Earley, E., Serrato-Capuchina, A., Peede, D., Monroy-Eklund, A., … Coyne, J. A. (2020). Rapid and Predictable Evolution of Admixed Populations Between Two Drosophila Species Pairs. GENETICS, 214(1), 211–230. https://doi.org/10.1534/genetics.119.302685

Brumos, J., Zhao, C., Gong, Y., Soriano, D., Patel, A. P., Perez-Amador, M. A., … Alonso, J. M. (2020). An Improved Recombineering Toolset for Plants. The Plant Cell. https://doi.org/10.1105/tpc.19.00431

Fernandez‐Moreno, J. P., & Stepanova, A. N. (2020). Monitoring Ethylene in Plants: Genetically Encoded Reporters and Biosensors. Small Methods. https://doi.org/10.1002/smtd.201900260

Yan, Y., Williamson, M. E., Davis, R. J., Andere, A. A., Picard, C. J., & Scott, M. J. (2020). Improved transgenic sexing strains for genetic control of the Australian sheep blow fly Lucilia cuprina using embryo-specific gene promoters. MOLECULAR GENETICS AND GENOMICS, 295(2), 287–298. https://doi.org/10.1007/s00438-019-01622-3

DeWitt, N., Guedira, M., Lauer, E., Sarinelli, M., Tyagi, P., Fu, D., … Brown-Guedira, G. (2020). Sequence-based mapping identifies a candidate transcription repressor underlying awn suppression at the B1 locus in wheat. NEW PHYTOLOGIST, 225(1), 326–339. https://doi.org/10.1111/nph.16152