Works Published in 2004

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Displaying works 41 - 60 of 93 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2004 review

The evolution of molecular genetic pathways and networks

[Review of ]. BIOESSAYS, 26(5), 479–484.

MeSH headings : Animals; Evolution, Molecular; Genomics; Humans; Models, Genetic; Molecular Biology; Phenotype
TL;DR: Investigations on the relationships between network organization, topological architecture and evolutionary dynamics provide intriguing hints as to how networks evolve. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2004 review

Reprogramming plant gene expression: a prerequisite to geminivirus DNA replication

[Review of ]. MOLECULAR PLANT PATHOLOGY, 5(2), 149–156.

By: L. Hanley-Bowdoin*, S. Settlage* & D. Robertson n

TL;DR: Recent experiments showing that geminiviruses also modulate components of the retinoblastoma/E2F transcription regulatory network to induce quiescent plant cells to re-enter the cell cycle and regain the capacity to support high levels of DNA replication are discussed. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 review

Quantitative genetic analyses of complex behaviours in Drosophila

[Review of ]. NATURE REVIEWS GENETICS, 5(11), 838–849.

MeSH headings : Animals; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Gene Expression Profiling; Genetics, Behavioral; Genotype; Phenotype; Sex Characteristics; Transcription, Genetic
TL;DR: Drosophila melanogaster provides an attractive system for elucidating the unifying principles of the genetic architectures that drive behaviours, as genetically identical individuals can be reared rapidly in controlled environments and extensive publicly accessible genetic resources are available. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2004 review

Molecular evidence on plant divergence times

[Review of ]. AMERICAN JOURNAL OF BOTANY, 91(10), 1656–1665.

author keywords: adaptive radiation; biogeography; divergence time; molecular clock; phylogeny; rates
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Functional divergence caused by ancient positive selection of a Drosophila hybrid incompatibility locus

PLoS Biology, 2(6), 839–848.

MeSH headings : Amino Acid Sequence; Animals; DNA Primers; Drosophila Proteins / genetics; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Genetics, Population; Hybridization, Genetic / genetics; Male; Models, Genetic; Molecular Sequence Data; Phylogeny; Reproduction / physiology; Reverse Transcriptase Polymerase Chain Reaction; Selection, Genetic; Sequence Alignment; Sequence Analysis, DNA; Species Specificity; Transgenes / genetics
TL;DR: It is demonstrated that transgenic copies of the X-linked Hybrid male rescue (Hmr) gene have functionally diverged to cause F1 hybrid incompatibility between D. simulans and D. mauritiana, and it is suggested that multiple substitutions driven by natural selection may be a general phenomenon required to generate hybrid incomp compatibility alleles. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science; OpenAlex)
Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

An interactive network of zinc-finger proteins contributes to regionalization of the Drosophila embryo and establishes the domains of HOM-C protein function

DEVELOPMENT, 131(12), 2781–2789.

By: L. Robertson n, D. Bowling n, J. Mahaffey n, B. Imiolczyk n & J. Mahaffey n

author keywords: Hex; homeotic; zinc finger; Drosophila; segment identity; pattern formation
MeSH headings : Animals; Body Patterning / physiology; DNA-Binding Proteins / genetics; Drosophila Proteins / genetics; Drosophila melanogaster / embryology; Embryo, Nonmammalian / physiology; Gene Expression Regulation, Developmental / genetics; Homeodomain Proteins / genetics; Morphogenesis / physiology; Repressor Proteins / genetics; Transcription Factors / genetics; Zinc Fingers / physiology
TL;DR: It is concluded that a combination of regionalizing factors, in concert with the HOM-C proteins, promotes the specification of individual segment identity. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Accumulation of transposable elements in the genome of Drosophila melanogaster is associated with a decrease in fitness

JOURNAL OF HEREDITY, 95(4), 284–290.

By: E. Pasyukova n, S. Nuzhdin, T. Morozova & T. Mackay

MeSH headings : Analysis of Variance; Animals; Competitive Behavior / physiology; DNA Transposable Elements / genetics; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Genome; In Situ Hybridization; Reproduction / genetics; Reproduction / physiology; Selection, Genetic; Species Specificity; Translocation, Genetic / genetics
TL;DR: Both homozygous and heterozygous TE insertions were shown to have deleterious effects on fitness and its components, and higher rates of ectopic exchanges and chromosomal rearrangements resulting in early embryonic death are predicted from an increase in TE copy number. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 book

A primer of genome science (2nd ed.)

Sunderland, MA: Sinauer Associates.

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Variances of and correlations among progeny tests for reproductive traits of cows sired by AI bulls

JOURNAL OF DAIRY SCIENCE, 87(7), 2307–2313.

By: J. Clay n, B. McDaniel n & C. Brown n

author keywords: daughter; reproduction; fertility; non-return
MeSH headings : Animals; Breeding; Cattle / genetics; Dairying; Female; Fertility / genetics; Genetic Variation; Insemination, Artificial / veterinary; Lactation / genetics; Male; Quantitative Trait, Heritable; Reproduction / genetics
TL;DR: Very low correlations of EBV for daughter reproductive traits with PTA for yield indicate that, in order to improve daughter fertility, fertility must be incorporated in sire selection decisions. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Salt-induced antioxidant metabolism defenses in maize (Zea mays L.) seedlings

REDOX REPORT, 9(1), 29–36.

By: L. Menezes-Benavente n, S. Kernodle n, M. Margis-Pinheiro* & J. Scandalios n

author keywords: salinity; antioxidants; metabolism; defenses; maize
MeSH headings : Antioxidants / metabolism; Catalase / genetics; Catalase / metabolism; Gene Expression Profiling; Gene Expression Regulation, Plant / drug effects; Glutathione Reductase / genetics; Hydrogen Peroxide / metabolism; Isoenzymes / genetics; Isoenzymes / metabolism; Molecular Sequence Data; Phenotype; Plant Leaves / drug effects; Plant Leaves / growth & development; Plant Leaves / metabolism; Plant Roots / drug effects; Plant Roots / growth & development; Plant Roots / metabolism; RNA, Messenger / genetics; RNA, Messenger / metabolism; Reactive Oxygen Species / metabolism; Salts / pharmacology; Seedlings / drug effects; Seedlings / enzymology; Seedlings / genetics; Seedlings / metabolism; Superoxide Dismutase / genetics; Superoxide Dismutase / metabolism; Zea mays / drug effects; Zea mays / enzymology; Zea mays / genetics; Zea mays / metabolism
TL;DR: It is reported that salt disturbed antioxidant metabolism in maize seedlings, causing detrimental effects on the growth and development of maize plantlets, increased hydrogen peroxide production and altered antioxidant activities and transcripts profiles. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

SNPs, SSRs and inferences on cassava's origin

PLANT MOLECULAR BIOLOGY, 56(4), 517–526.

By: K. Olsen n

author keywords: crop domestication; Euphorbiaceae; haplotype genealogies; Manihot esculenia; microsatellites; nuclear DNA sequences
MeSH headings : Aldehyde-Lyases / genetics; Evolution, Molecular; Genetic Variation; Haplotypes; Manihot / classification; Manihot / genetics; Phylogeny; Polymorphism, Single Nucleotide; Repetitive Sequences, Nucleic Acid; beta-Glucosidase / genetics
TL;DR: SNPs and SSR alleles examined suggest that cassava was likely domesticated from a single wild Manihot species, M. esculenta ssp. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Quantitative trait loci affecting starvation resistance in Drosophila melanogaster

GENETICS, 166(4), 1807–1823.

By: S. Harbison n, A. Yamamoto n, J. Fanara n, K. Norga* & T. Mackay n

MeSH headings : Analysis of Variance; Animals; Crosses, Genetic; DNA Transposable Elements / genetics; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Genes, Insect / genetics; Genes, Insect / physiology; Genetic Complementation Test; Genetic Variation; Mutation / genetics; Quantitative Trait Loci; Starvation / genetics
TL;DR: The genes identified are involved in oogenesis, metabolism, and feeding behaviors, indicating a possible link to reproduction and survival, and also imply that resource allocation during development and at the cellular level may also influence the phenotypic response to starvation. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (OpenAlex)
13. Climate Action (Web of Science)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Quantitative trait loci affecting natural variation in Drosophila longevity

MECHANISMS OF AGEING AND DEVELOPMENT, 125(3), 179–189.

By: G. Geiger-Thornsberry n & T. Mackay n

author keywords: QTL mapping; quantitative complementation tests; candidate genes
MeSH headings : Aging / genetics; Animals; Drosophila Proteins / genetics; Drosophila melanogaster / genetics; Female; Genetic Complementation Test; Genetic Variation; Longevity / genetics; Male; Quantitative Trait Loci
TL;DR: Several genes that regulate life span complemented the life span effects of wild-derived alleles, suggesting little natural variation affecting longevity at these loci, at least in this sample of alleles. (via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018

2004 journal article

Low linkage disequilibrium indicative of recombination in foot-and-mouth disease virus gene sequence alignments

JOURNAL OF GENERAL VIROLOGY, 85, 1095–1100.

MeSH headings : Capsid Proteins / genetics; Foot-and-Mouth Disease Virus / genetics; Genes, Viral; Linkage Disequilibrium; Recombination, Genetic; Sequence Analysis, RNA / methods
TL;DR: Using the genealogical relationships, rate heterogeneity and mutation parameters estimated from individual sets of aligned gene sequences, matching RNA sequence datasets without recombination were simulated to allow for recurrent mutations at any site to mimic homoplasy in virus sequence data. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 patent

Geminivirus resistant transgenic plants expressing a mutant geminivirus AL3/C3 coding sequence

Washington, DC: U.S. Patent and Trademark Office.

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences

MOLECULAR BIOLOGY AND EVOLUTION, 21(7), 1201–1213.

By: T. Seo n, H. Kishino & J. Thorne*

author keywords: Bayesian method; Markov chain Monte Carlo (MCMC); rate change model; lognormal; evolutionary rate; selection; synonymous rate; nonsynonymous rate
MeSH headings : Animals; Base Sequence / genetics; Bayes Theorem; Electron Transport Complex IV / genetics; Evolution, Molecular; Genetic Variation; Nucleotides / genetics; Polymorphism, Genetic; Primates / genetics; Rodentia / genetics; Selection, Genetic; Sequence Analysis, DNA / methods
TL;DR: This work analyzes cytochrome oxidase subunit I evolution in primates and infer that nonsynonymous rates have a greater tendency to change over time than do synonymous rates, and suggests that rates have been positively correlated. (via Semantic Scholar)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 journal article

Establishment of rapidly proliferating rice cell suspension culture and its characterization by fluorescence-activated cell sorting analysis

PLANT MOLECULAR BIOLOGY REPORTER, 22(3), 259–267.

By: T. Lee n, R. Shultz n, L. Hanley-Bowdoin n & W. Thompson n

author keywords: cell suspension culture; FACS; nuclei isolation; Oryza sativa L.; pectinase
TL;DR: The studies described here demonstrate that NB2P culture can be a powerful tool for studying many important plant processes, including DNA replication and cell cycle-related pathways. (via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land (Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018

2004 journal article

A defective signal peptide in a 19-kD alpha-zein protein causes the unfolded protein response and an opaque endosperm phenotype in the maize De*-B30 mutant

PLANT PHYSIOLOGY, 134(1), 380–387.

By: C. Kim n, B. Hunter n, J. Kraft n, R. Boston n, S. Yans n, R. Jung n, B. Larkins n

MeSH headings : Amino Acid Sequence; Base Sequence; DNA, Complementary / genetics; DNA, Plant / genetics; Genes, Plant; Molecular Sequence Data; Molecular Weight; Mutation; Phenotype; Plants, Genetically Modified; Protein Folding; Protein Sorting Signals / genetics; Recombinant Proteins / chemistry; Recombinant Proteins / genetics; Sequence Homology, Amino Acid; Zea mays / chemistry; Zea mays / genetics; Zein / chemistry; Zein / genetics
TL;DR: Results are consistent with the hypothesis that the De*-B30 mutation causes a defective signal peptide in a 19-kD α-zein protein. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

The quantitative genetic basis of male mating behavior in Drosophila melanogaster

GENETICS, 167(3), 1249–1263.

MeSH headings : Animals; Chromosome Mapping; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Genetic Complementation Test; Male; Quantitative Trait Loci; Sexual Behavior, Animal / physiology
TL;DR: QTL affecting courtship occurrence, courtship latency, copulation occurrence, and copulation latency that segregate between a D. melanogaster strain selected for reduced male mating propensity and a standard wild-type strain are mapped. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 journal article

The National Pork Producers Council Maternal Line Mational Genetic Evaluation Program: A comparison of six maternal genetic lines for female productivity measures over four parities

Journal of Animal Science, 82(1), 41–53.

By: S. Moeller*, R. Goodwin*, R. Johnson*, J. Mabry*, T. Baas* & O. Robison n

MeSH headings : Adipose Tissue / growth & development; Animals; Crosses, Genetic; Female; Fertility / genetics; Genetic Variation; Hybrid Vigor / genetics; Lactation / genetics; Litter Size / genetics; Male; Models, Genetic; Parity / genetics; Reproduction / genetics; Swine / genetics; Swine / physiology
TL;DR: The GPK347 females farrowed and weaned the largest number of pigs, ate less feed in lactation, and lost more backfat and weight during lactation; yet they had the largest litters and the shortest wean-to-estrus intervals. (via Semantic Scholar)
Source: NC State University Libraries
Added: August 6, 2018

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