Works Published in 2005
Displaying works 41 - 60 of 101 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2005 journal article
A link between ethylene and auxin uncovered by the characterization of two root-specific ethylene-insensitive mutants in Arabidopsis
PLANT CELL, 17(8), 2230–2242.
Contributors: A. Stepanova n , J. Hoyt n, A. Hamilton n & J. Alonso n
MeSH headings : Anthranilate Synthase / genetics; Anthranilate Synthase / metabolism; Arabidopsis / genetics; Ethylenes / metabolism; Indoleacetic Acids / physiology; Mutation; Nitrogenous Group Transferases / genetics; Nitrogenous Group Transferases / metabolism; Plant Growth Regulators / physiology; Plant Roots / genetics; Plant Roots / physiology
TL;DR:
It is shown that ethylene-triggered inhibition of root growth, one of the classical effects of ethylene in Arabidopsis thaliana seedlings, is mediated by the action of the WEAK ETHYLENE INSENSITIVE2/ANTHRANILATE SYNTHASE α1 and ASA1 genes that encode α- and β-subunits of a rate-limiting enzyme of Trp biosynthesis, anthranilate synthase.
(via Semantic Scholar)
www.plantcell.org (publisher PDF)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
13. Climate Action
(Web of Science)
Sources: Web Of Science, ORCID, NC State University Libraries
Added: August 6, 2018
2005 review
The quantitative genetics of transcription
[Review of ]. TRENDS IN GENETICS, 21(11), 616–623.
MeSH headings : Chi-Square Distribution; Chromosome Mapping; Evolution, Molecular; Genetic Variation; Humans; Quantitative Trait Loci; Transcription, Genetic
TL;DR:
Several studies imply pervasive non-additivity of transcription, transgressive segregation and epistasis, and future studies will soon document the extent of genotype-environment interaction and population structure at the transcriptional level.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
The maize alternative oxidase 1a (Aox1a) gene is regulated by signals related to oxidative stress
REDOX REPORT, 10(2), 71–78.
author keywords: alternative oxidase; glutathione S-transferase; reactive oxygen species; nitric oxide; salicylic acid; mitochondrial respiration
MeSH headings : Base Sequence; Gene Expression Regulation, Plant; Hydrogen Peroxide / pharmacology; Introns; Mitochondrial Proteins; Models, Biological; Molecular Sequence Data; Oxidative Stress; Oxidoreductases / biosynthesis; Oxidoreductases / genetics; Plant Proteins; Potassium Cyanide / pharmacology; Promoter Regions, Genetic; Reactive Oxygen Species; Salicylamides / pharmacology; Salicylic Acid / pharmacology; Signal Transduction; Zea mays / genetics
TL;DR:
It is shown that multiple signaling pathways, involved in stress responses, also participate and differentially regulate Aox1a and GstI in maize and a ROS-depended signaling event may be involved, suggesting an essential role of A ox1a under oxidative stress in maize.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
6. Clean Water and Sanitation
(OpenAlex)
13. Climate Action
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 review
Robustness and evolvability in living systems
[Review of ]. Science, 310(5746), 237.
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
Recombination hotspots and population structure in Plasmodium falciparum
PLOS BIOLOGY, 3(10), 1734–1741.
MeSH headings : Africa; Animals; Asia, Southeastern; Central America; Drug Resistance; Genetics, Population; Linkage Disequilibrium / genetics; Papua New Guinea; Plasmodium falciparum / genetics; Polymorphism, Single Nucleotide; Recombination, Genetic / physiology; South America
TL;DR:
This study supports the feasibility of genome-wide association studies in some parasite populations by describing the first chromosome-wide SNP haplotype and population recombination maps for a global collection of malaria parasites, including the 3D7 isolate, whose genome has been sequenced previously.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Networks of coevolving sites in structural and functional domains of serpin proteins
MOLECULAR BIOLOGY AND EVOLUTION, 22(7), 1627–1634.
author keywords: serpin; factor analysis; coevolution; covariation; protein structure; mutual information
MeSH headings : Amino Acids / chemistry; Animals; Crystallography, X-Ray; Evolution, Molecular; Factor Analysis, Statistical; Multivariate Analysis; Phylogeny; Protein Conformation; Protein Folding; Protein Structure, Secondary / genetics; Sequence Analysis, Protein; Serine Proteinase Inhibitors; Serpins / chemistry; Serpins / physiology; Structure-Activity Relationship
TL;DR:
This research provides a better understanding on how protein structure evolves and elucidates the selective forces creating coevolution among protein sites.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Inheritance of powdery mildew resistance and leaf macrohair density in Gerbera hybrida
HORTSCIENCE, 40(5), 1246–1251.
author keywords: Podosphaera fusca resistance; gerbera genetics; macrohairs; trichomes
TL;DR:
The primary objectives of this investigation were to determine the mode of inheritance of PM resistance and MH density traits and determine if there was a causal relationship between the phenotypes, and to develop disease resistant gerbera cultivars.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Identification and characterization of endoplasmic reticulum-associated degradation proteins differentially affected by endoplasmic reticulum stress
PLANT PHYSIOLOGY, 138(1), 218–231.
MeSH headings : Amino Acid Sequence; Consensus Sequence; Endoplasmic Reticulum / genetics; Endoplasmic Reticulum / physiology; Humans; Membrane Proteins / chemistry; Membrane Proteins / genetics; Molecular Sequence Data; Multigene Family; Plant Leaves / genetics; Plant Proteins / genetics; Plant Proteins / metabolism; Plant Roots / genetics; Plant Stems / genetics; Ribotyping; Sequence Alignment; Sequence Homology, Amino Acid; Zea mays / genetics
TL;DR:
Four maize (Zea mays) Der1-like genes (Zm Derlins) that encode homologs of Der1p, a yeast (Saccharomyces cerevisiae) protein implicated in ER-associated degradation are identified, indicating that the Der 1p function is conserved among species.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 article
Genetics and genomics of Drosophila mating behavior
Mackay, T. F. C., Heinsohn, S. L., Lyman, R. F., Moehring, A. J., Morgan, T. J., & Rollmann, S. M. (2005, May 3). PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, Vol. 102, pp. 6622–6629.
MeSH headings : Animals; Chromosomes; Copulation / physiology; Drosophila melanogaster / genetics; Drosophila melanogaster / physiology; Female; Genes, Insect / genetics; Genomics; Male; Phenotype; Sexual Behavior, Animal / physiology; Transcription, Genetic / genetics
TL;DR:
Drosophila melanogaster was subjected to 29 generations of replicated divergent artificial selection for mating speed, and the phenotypic response to selection was highly asymmetrical in the direction of reduced mating speed.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Geminivirus C3 protein: Replication enhancement and protein interactions
JOURNAL OF VIROLOGY, 79(15), 9885–9895.
MeSH headings : Amino Acid Sequence; Consensus Sequence; Geminiviridae / metabolism; Geminiviridae / physiology; Molecular Sequence Data; Plant Diseases / virology; Plant Proteins / metabolism; Proliferating Cell Nuclear Antigen / metabolism; Protein Binding; Tobacco; Viral Proteins / genetics; Viral Proteins / metabolism; Virus Replication
TL;DR:
Investigating the impact of mutations to amino acids that are conserved across the C3 protein family on replication enhancement and protein interactions in dicot-infecting geminivirus replication established the importance of C3-C3, C2-C1, and C4-PCNA interactions in geminIVirus replication.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science)
3. Good Health and Well-being
(OpenAlex)
13. Climate Action
(Web of Science)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2005 article
Comparative plant genomics. Frontiers and prospects
Caicedo, A. L., & Purugganan, M. D. (2005, June). PLANT PHYSIOLOGY, Vol. 138, pp. 545–547.
MeSH headings : Biological Evolution; Expressed Sequence Tags; Gene Expression Profiling; Genome, Plant; Genomic Library; Genomics / trends; Phylogeny
TL;DR:
The availability of whole-genome sequences as well as other genomic resources (e.g. microarray methods, expressed sequence tag [EST] libraries) and comparisons have long been the cornerstone of studies that draw inferences about function and evolution at various levels of biological organization.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Adaptive radiation and regulatory gene evolution in the Hawaiian silversword alliance (Asteraceae)
Annals of the Missouri Botanical Garden, 92(1), 28–35.
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
The rb7 matrix attachment region increases the likelihood and magnitude of transgene expression in tobacco cells: A flow cytometric study
PLANT CELL, 17(2), 418–429.
MeSH headings : Agrobacterium tumefaciens / genetics; DNA, Bacterial / genetics; Flow Cytometry / methods; Gene Expression Regulation, Plant; Green Fluorescent Proteins / genetics; Green Fluorescent Proteins / metabolism; Matrix Attachment Regions; Plants, Genetically Modified; Promoter Regions, Genetic / genetics; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Tobacco / cytology; Tobacco / genetics; Transformation, Genetic; Transgenes / genetics
TL;DR:
Flow cytometry is used to measure green fluorescent protein (GFP) expression in individual tobacco cells from lines transformed by Agrobacterium tumefaciens to conclude that MAR-mediated overall increases in transgene expression involve both likelihood and magnitude.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Sources: Web Of Science, NC State University Libraries
Added: August 6, 2018
2005 journal article
Tests for the replication of an association between Egfr and natural variation in Drosophila melanogaster wing morphology
BMC Genetics, 6.
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
Solving the protein sequence metric problem
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6395–6400.
author keywords: basic helix-loop-helix; molecular evolution; multivariate statistics; amino acid attributes; factor analysis
MeSH headings : Amino Acid Sequence / genetics; Analysis of Variance; Cluster Analysis; Codon / genetics; Computational Biology / methods; Discriminant Analysis; Genetic Variation; Models, Genetic; Multivariate Analysis; Phylogeny; Protein Conformation; Static Electricity; Statistics as Topic / methods
TL;DR:
Multivariate statistical analyses on almost 500 amino acid attributes are used to produce a small set of highly interpretable numeric patterns of amino acid variability that reflect polarity, secondary structure, molecular volume, codon diversity, and electrostatic charge.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
10. Reduced Inequalities
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Sequence signatures and the probabilistic identification of proteins in the Myc-Max-Mad network
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 102(18), 6401–6406.
author keywords: Myc; predictive motif; transcription factor; oncoprotein; molecular evolution
MeSH headings : Amino Acid Sequence / genetics; Basic-Leucine Zipper Transcription Factors; Computational Biology / methods; DNA-Binding Proteins / genetics; Fuzzy Logic; Genetic Variation; Genomics / methods; Helix-Loop-Helix Motifs / genetics; Molecular Sequence Data; Protein Conformation; Proto-Oncogene Proteins c-myc / genetics; Repressor Proteins / genetics; Sequence Alignment; Sequence Homology; Transcription Factors / genetics
TL;DR:
A small set of amino acid sites from the N-terminal portion of the basic helix-loop-helix (bHLH) domain are described that provide very accurate sequence signatures for the Myc-Max-Mad transcription factor network and three of its member proteins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Sequence analysis of the Lactobacillus plantarum bacteriophage Phi JL-1
GENE, 348, 45–54.
author keywords: bacteriophage; Phi JL-1; sequence analysis; structural proteins; Lactobacillus plantarum
MeSH headings : Amino Acid Sequence; Bacteriolysis / genetics; Bacteriophages / genetics; Bacteriophages / ultrastructure; Chromosome Mapping; DNA Replication / genetics; DNA, Viral / chemistry; DNA, Viral / genetics; Genes / genetics; Genome, Viral; Lactobacillus plantarum / virology; Microscopy, Electron; Molecular Sequence Data; Sequence Analysis, DNA; Sequence Homology, Amino Acid; Viral Structural Proteins / genetics; Virus Assembly / genetics
TL;DR:
The structural gene maps revealed that the order of the head and tail genes is highly conserved among the genomes of several Siphoviridae phages, allowing the assignment of probable functions to certain uncharacterized ORFs from phage PhiJL-1 and other Siphaviridaephages.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Replication of an egfr-wing shape association in a wild-caught cohort of Drosaphila melanogaster
GENETICS, 169(4), 2115–2125.
MeSH headings : Alleles; Analysis of Variance; Animals; Chromosome Mapping; Cohort Studies; Drosophila melanogaster / metabolism; ErbB Receptors / metabolism; ErbB Receptors / physiology; Evolution, Molecular; Gene Frequency; Genotype; Linkage Disequilibrium; Models, Genetic; Phenotype; Polymorphism, Genetic; Reverse Transcriptase Polymerase Chain Reaction; Wings, Animal / anatomy & histology; Wings, Animal / embryology
TL;DR:
It is demonstrated that despite considerable phenotypic differences for wing shape between a lab-reared experimental population and a wild-caught cohort of Drosophila melanogaster, an association between a putative regulatory polymorphism in Egfr and wing shape can be replicated.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2005 journal article
Phylogenetic analyses identify 10 classes of the protein disulfide isomerase family in plants, including single-domain protein disulfide isomerase-related proteins
Plant Physiology, 137(2), 762–778.
MeSH headings : Base Sequence; Evolution, Molecular; Gene Expression Regulation; Molecular Sequence Data; Multigene Family; Oxidative Stress; Phylogeny; Plants / enzymology; Plants / genetics; Protein Disulfide-Isomerases / genetics; Sequence Homology, Nucleic Acid; Thioredoxins / genetics
TL;DR:
A genome-wide search of Arabidopsis genes was carried out to identify plant PDI-like proteins, and a set of 22 PDIL proteins were identified that constitute a well-supported clade containing orthologs of known PDIs.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: NC State University Libraries
Added: August 6, 2018
2005 journal article
PathwayVoyager: pathway mapping using the Kyoto Encyclopedia of Genes and Genomes (KEGG) database
BMC Genomics, 6.
Source: NC State University Libraries
Added: August 6, 2018
Citation Index includes data from a number of different sources. If you have questions about the sources of data in the Citation Index or need a set of data which is free to re-distribute, please contact us.
Certain data included herein are derived from the Web of Science© and InCites© (2024) of Clarivate Analytics. All rights reserved. You may not copy or re-distribute this material in whole or in part without the prior written consent of Clarivate Analytics.
