Works Published in 2007
Displaying works 61 - 76 of 76 in total
Sorted by most recent date added to the index first, which may not be the same as publication date order.
2007 journal article
Incorporating indel information into phylogeny estimation for rapidly emerging pathogens
BMC Evolutionary Biology, 7.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Genetics of microenvironmental canalization in Arabidopsis thaliana
Proceedings of the National Academy of Sciences of the United States of America, 104(34), 13717–13722.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Evolutionary patterns in the antR-Cor gene in the dwarf dogwood complex (Cornus, Cornaceae)
GENETICA, 130(1), 19–34.
author keywords: Cornus; gene evolution; hybridization; Myc-like anthocyanin regulatory gene; mucleotide polymorphism; polyploid; speciation
MeSH headings : Alaska; Amino Acid Sequence; Base Sequence; British Columbia; Color; Cornus / genetics; Evolution, Molecular; Flowers / genetics; Genes, Plant; Genetic Variation; Idaho; Molecular Sequence Data; Oregon; Phylogeny; Sequence Homology, Nucleic Acid; Washington; Yukon Territory
TL;DR:
Seven amino acid mutations that are potentially linked to myc-like anthocyanin regulatory gene function correlate with petal colors differences that characterize the divergence between two diploid species and the tetraploids species in this dwarf dogwood complex, providing a working hypothesis for testing the role of the gene in speciation and its link to the petal coloration.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
14. Life Below Water
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Racial diversity of maize in Brazil and adjacent areas
Maydica, 52(1), 13–30.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Quantitative nanoscale local strain profiling in embedded SiGe metal-oxide-semiconductor structures
APPLIED PHYSICS LETTERS, 90(19).
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Human evolution: Thrifty genes and the dairy queen
Current Biology, 17(8), R295–296.
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Abortive phage resistance mechanism AbiZ speeds the lysis clock to cause premature lysis of phage-infected Lactococcus lactis
JOURNAL OF BACTERIOLOGY, 189(4), 1417–1425.
MeSH headings : Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Bacteriophages; Cloning, Molecular; Lactococcus lactis / metabolism; Lactococcus lactis / virology; Open Reading Frames; Plasmids / genetics; Plasmids / physiology
TL;DR:
Results suggest that AbiZ may interact cooperatively with holin to cause premature lysis in phages of the P335 group, through reduction in either plaque size, EOP, or both.
(via Semantic Scholar)
jb.asm.org (publisher PDF)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Quantitative trait transcripts for nicotine resistance in Drosophila melanogaster
NATURE GENETICS, 39(2), 264–268.
MeSH headings : Animals; California; Drosophila melanogaster / drug effects; Drosophila melanogaster / genetics; Drug Resistance; Female; Genetic Linkage; Genetic Variation; Glutamate Decarboxylase / metabolism; Isoenzymes / metabolism; Longevity; Mice; Nicotine / pharmacology; North Carolina; Ornithine-Oxo-Acid Transaminase / metabolism; Quantitative Trait Loci; gamma-Aminobutyric Acid / metabolism
TL;DR:
A complex role for ornithine and GABA levels in modification of survival time upon chronic nicotine exposure is confirmed and differences between populations from North Carolina and California suggest that the resistance mechanism may be an evolved response to environmental exposure.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
A tabu search algorithm for maximum parsimony phylogeny inference
EUROPEAN JOURNAL OF OPERATIONAL RESEARCH, 176(3), 1908–1917.
author keywords: tabu search; OR in biology; bioinformatics; phylogeny inference; maximum parsimony
TL;DR:
The parsimony principle is adopted and a tabu search algorithm is designed for finding a most parsimonious phylogeny tree and it generates much more accurate results than the default options of the program “dnapars” (heuristic search based).
(via Semantic Scholar)
UN Sustainable Development Goal Categories
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Analysis of an introgressed Nicotiana tomentosa genomic region affecting leaf number and correlated traits in Nicotiana tabacum
THEORETICAL AND APPLIED GENETICS, 114(5), 841–854.
MeSH headings : Amplified Fragment Length Polymorphism Analysis; Chromosome Mapping; Genome, Plant; Genotype; Hybridization, Genetic; Plant Leaves / anatomy & histology; Quantitative Trait Loci; Species Specificity; Tobacco / anatomy & histology; Tobacco / classification; Tobacco / genetics
TL;DR:
It is demonstrated that genomic regions with large genetic effects can be transferred to tobacco from closely related diploid relatives, and that sufficient recombination within these regions may permit mapping of genes controlling quantitative traits.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger
(Web of Science; OpenAlex)
13. Climate Action
(Web of Science)
15. Life on Land
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Molecular architecture of the DNA-binding region and its relationship to classification of basic helix-loop-helix proteins
MOLECULAR BIOLOGY AND EVOLUTION, 24(1), 192–202.
author keywords: computational biology; bHLH proteins; molecular architecture; multivariate statistics; DNA-binding specificity; molecular evolution
MeSH headings : Animals; Basic Helix-Loop-Helix Transcription Factors / chemistry; Basic Helix-Loop-Helix Transcription Factors / classification; Basic Helix-Loop-Helix Transcription Factors / genetics; Basic Helix-Loop-Helix Transcription Factors / metabolism; Binding Sites; Codon / genetics; DNA / metabolism; Dimerization; Humans; Hydrophobic and Hydrophilic Interactions; Protein Structure, Secondary; Protein Structure, Tertiary; Static Electricity
TL;DR:
Using multivariate statistical analyses, discriminant analyses describe the multidimensional aspects of physiochemical variation and clarify the structural basis of the prevailing evolutionary classification of basic helix-loop-helix proteins.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
10. Reduced Inequalities
(OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Modification of Lactobacillus beta-glucuronidase activity by random mutagenesis
GENE, 389(2), 122–127.
author keywords: Lactobacillus gasseri gusA; gene; reporter enzyme; pH range; Epicurian coli
MeSH headings : Amino Acid Sequence; Amino Acid Substitution; Bacterial Proteins / chemistry; Bacterial Proteins / genetics; Bacterial Proteins / metabolism; Cloning, Molecular; DNA, Bacterial; Escherichia coli / enzymology; Escherichia coli / genetics; Genes, Bacterial; Glucuronidase / chemistry; Glucuronidase / genetics; Glucuronidase / metabolism; Hydrogen-Ion Concentration; Lactobacillus / enzymology; Lactobacillus / genetics; Molecular Sequence Data; Mutagenesis; Sequence Alignment; Sequence Analysis, DNA; Transformation, Bacterial
TL;DR:
The modified GusA3 enzyme has expanded potential for use as a reporter enzyme in expression hosts that are not acidophilic, as well as lactic acid bacteria and other microorganisms that grow in acidifying environments.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 article
Influence of the dairy environment on gene expression and substrate(1-3)
Klaenhammer, T. R., Azcarate-Peril, M. A., Altermann, E., & Barrangou, R. (2007, March). JOURNAL OF NUTRITION, Vol. 137, pp. 748S–750S.
MeSH headings : Animals; Cattle; Dairy Products; Dairying; Environment; Gene Expression Regulation, Bacterial; Lactobacillaceae / genetics; Lactobacillaceae / metabolism; Probiotics
TL;DR:
Comparative genomics between multiple genomes is providing insights into genes that are important in metabolic, physiological, and functional roles for different LAB in the environments they inhabit, ranging from the gastrointestinal tract to milk and acidified dairy products.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
Genome-wide variation and identification of vaccine targets in the Plasmodium falciparum genome
NATURE GENETICS, 39(1), 126–130.
MeSH headings : Animals; Antigens, Protozoan / genetics; Antigens, Protozoan / isolation & purification; Antigens, Protozoan / metabolism; Cell-Free System / metabolism; Chromosome Mapping; Drug Delivery Systems; Drug Design; Drug Resistance / genetics; Genetic Variation; Genome, Protozoan; Humans; Immune Sera / chemistry; Malaria Vaccines / immunology; Malaria, Falciparum / immunology; Malaria, Falciparum / parasitology; Plasmodium falciparum / genetics; Plasmodium falciparum / immunology
TL;DR:
This work surveyed P. falciparum genes for polymorphisms and identified various highly polymorphic loci and genes, some of which encode new antigens that are confirmed using human immune sera and providing urgently needed vaccine candidates for disease control.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science; OpenAlex)
Source: Web Of Science
Added: August 6, 2018
2007 journal article
eQTL Viewer: visualizing how sequence variation affects genome-wide transcription
BMC Bioinformatics, 8(7).
Source: NC State University Libraries
Added: August 6, 2018
2007 journal article
Comparison of statistical performance of univariate and bivariate mixed models for Affymetrix (R) probe level data
JOURNAL OF STATISTICAL COMPUTATION AND SIMULATION, 77(3), 251–264.
author keywords: Affymetrix (R); mixed model; bivariate model; perfect match probes; mismatch probes
TL;DR:
It is shown that the bivariate mixed model offers moderate gains in power over a comparable univariate model that ignores the MM data, and is more prominent when the number of replicates and the array-to-array variability is small.
(via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being
(Web of Science)
Source: Web Of Science
Added: August 6, 2018
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