Works Published in 2004

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Displaying works 1 - 20 of 93 in total

Sorted by most recent date added to the index first, which may not be the same as publication date order.

2004 journal article

Progress towards the development of a transgenic strain of the Australian sheep blowfly (Lucilia cuprina) suitable for a male-only sterile release program

Insect Biochemistry and Molecular Biology, 34(2), 185–192.

By: M. Scott, J. Heinrich & X. Li

Source: ORCID
Added: January 29, 2024

2004 journal article

The Splicing Graph – A Tool for Visualising Gene Structure and Alternative Splicing

Future Drug Discovery, 62–65.

By: J. Leipzig, D. Nielsen & S. Heber

Source: NC State University Libraries
Added: March 19, 2021

2004 conference paper

Multi-locus Linkage Disequilibrium and Haplotype-Based Tests of Association

Computational Methods for SNPs and Haplotype Inference, 139–139.

By: D. Nielsen n

Event: DIMACS/RECOMB Satellite Workshop at Piscataway, New Jersey, USA on November 21-22, 2002

TL;DR: Several tests of haplotype association are presented here, along with a comparison of these tests within different LD contexts, and there is no longer a simple relationship with recombination. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: March 5, 2021

2004 journal article

Effect of Two- and Three-Locus Linkage Disequilibrium on the Power to Detect Marker/Phenotype Associations

Genetics, 168(2), 1029–1040.

By: D. Nielsen n, M. Ehm*, D. Zaykin* & B. Weir n

MeSH headings : Case-Control Studies; Computational Biology / methods; Computational Biology / statistics & numerical data; Genetic Markers / genetics; Genetic Variation / genetics; Genotype; Haplotypes; Humans; Linkage Disequilibrium / genetics; Phenotype; Polymorphism, Genetic / genetics; Quantitative Trait, Heritable
TL;DR: This work examines many different patterns of LD defined by both pairwise and joint multilocus LD terms, and examines how changes in these patterns affect the power to detect association when performing single-marker and haplotype-based case-control tests. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: September 5, 2020

2004 journal article

Type-A Arabidopsis response regulators are partially redundant negative regulators of cytokinin signaling

The Plant Cell Online, 16(3), 658–671.

By: J. To, G. Haberer, F. Ferreira, J. Deruère, M. Mason, G. Schaller, J. Alonso, J. Ecker, J. Kieber

Contributors: J. To, G. Haberer, F. Ferreira, J. Deruère, M. Mason, G. Schaller, J. Alonso, J. Ecker, J. Kieber

Source: ORCID
Added: December 19, 2019

2004 journal article

The phytochrome-interacting transcription factor, PIF3, acts early, selectively, and positively in light-induced chloroplast development

Proceedings of the National Academy of Sciences, 101(46), 16091–16098.

Contributors: E. Monte*, J. Tepperman*, B. Al-Sady*, K. Kaczorowski*, J. Alonso*, J. Ecker*, X. Li*, Y. Zhang*, P. Quail*

MeSH headings : Arabidopsis / genetics; Arabidopsis / growth & development; Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / physiology; Basic Helix-Loop-Helix Transcription Factors; Chlorophyll / metabolism; Chloroplasts / physiology; Chloroplasts / radiation effects; Circadian Rhythm; Gene Expression Profiling; Genes, Plant; Light; Mutation; Photosynthetic Reaction Center Complex Proteins / genetics; Photosynthetic Reaction Center Complex Proteins / physiology; Phytochrome / genetics; Phytochrome / physiology; Plants, Genetically Modified; Seedlings / growth & development; Seedlings / physiology; Seedlings / radiation effects; Signal Transduction
Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

The canonical ethylene signaling pathway

Science Signaling, 2004(221), cm1.

By: A. Stepanova & J. Alonso

Contributors: A. Stepanova & J. Alonso

Source: ORCID
Added: December 19, 2019

2004 journal article

Regulation of flowering time in Arabidopsis by K homology domain proteins

Proceedings of the National Academy of Sciences, 101(34), 12759–12764.

By: T. Mockler*, X. Yu*, D. Shalitin*, D. Parikh*, T. Michael*, J. Liou*, J. Huang*, Z. Smith* ...

Contributors: T. Mockler*, X. Yu*, D. Shalitin*, D. Parikh*, T. Michael*, J. Liou*, J. Huang*, Z. Smith*, J. Alonso*, J. Ecker*

MeSH headings : Arabidopsis / physiology; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Biological Clocks / physiology; Circadian Rhythm / physiology; Flowers / physiology; Gene Expression Profiling; Gene Expression Regulation, Plant; MADS Domain Proteins / genetics; MADS Domain Proteins / metabolism; Mutation; Oligonucleotide Array Sequence Analysis; Photoperiod; Plants, Genetically Modified; Recombinant Fusion Proteins / genetics; Recombinant Fusion Proteins / metabolism; Time Factors
TL;DR: A study of the flowering-time gene, FLK [flowering locus K homology (KH) domain] that encodes a putative RNA-binding protein with three KH domains that causes delayed flowering without a significant effect on the photoperiodic or vernalization responses. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

GCR1 can act independently of heterotrimeric G-protein in response to brassinosteroids and gibberellins in Arabidopsis seed germination

Plant Physiology, 135(2), 907–915.

By: J. Chen, S. Pandey, J. Huang, J. Alonso, J. Ecker, S. Assmann, A. Jones

Contributors: J. Chen, S. Pandey, J. Huang, J. Alonso, J. Ecker, S. Assmann, A. Jones

Source: ORCID
Added: December 19, 2019

2004 journal article

DELLA proteins and gibberellin-regulated seed germination and floral development in Arabidopsis

Plant Physiology, 135(2), 1008–1019.

By: L. Tyler, S. Thomas, J. Hu, A. Dill, J. Alonso, J. Ecker, T. Sun

Contributors: L. Tyler, S. Thomas, J. Hu, A. Dill, J. Alonso, J. Ecker, T. Sun

Source: ORCID
Added: December 19, 2019

2004 journal article

Convergence of signaling pathways in the control of differential cell growth in Arabidopsis

Developmental Cell, 7(2), 193–204.

Contributors: H. Li*, P. Johnson*, A. Stepanova*, J. Alonso* & J. Ecker*

MeSH headings : ADP-Ribosylation Factors / genetics; Alleles; Arabidopsis / genetics; Arabidopsis / physiology; Cell Division; Cloning, Molecular; Ethylenes / pharmacology; Gene Expression Regulation, Plant; Immunoblotting; In Situ Hybridization; Indoleacetic Acids / metabolism; Models, Biological; Models, Genetic; Mutagenesis; Mutation; Phenotype; Plant Proteins / physiology; Plants, Genetically Modified; Plasmids / metabolism; RNA / metabolism; Saccharomyces cerevisiae Proteins; Signal Transduction; Time Factors; Transcription, Genetic
TL;DR: It is demonstrated that both ethylene and light signals affect differential cell growth by acting through HLS1 to modulate the auxin response factors, pinpointing HLS 1 as a key integrator of the signaling pathways that control hypocotyl bending. (via Semantic Scholar)
Source: ORCID
Added: December 19, 2019

2004 journal article

CBF2/DREB1C is a negative regulator of CBF1/DREB1B and CBF3/DREB1A expression and plays a central role in stress tolerance in Arabidopsis

Proceedings of the National Academy of Sciences, 101(11), 3985–3990.

Contributors: F. Novillo*, J. Alonso*, J. Ecker* & J. Salinas*

MeSH headings : Arabidopsis / genetics; Arabidopsis / metabolism; Arabidopsis Proteins / biosynthesis; Arabidopsis Proteins / genetics; Arabidopsis Proteins / metabolism; Cold Temperature; DNA-Binding Proteins / biosynthesis; DNA-Binding Proteins / genetics; Mutation; Time Factors; Trans-Activators / biosynthesis; Trans-Activators / genetics; Trans-Activators / metabolism; Transcription Factors
TL;DR: It is shown that cbf2 plants have higher capacity to tolerate freezing than WT ones before and after cold acclimation and are more tolerant to dehydration and salt stress and negatively regulates CBF2/DREB1C, ensuring that their expression is transient and tightly controlled. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: December 19, 2019

2004 journal article

A Homolog of Prokaryotic Thiol Disulfide Transporter CcdA Is Required for the Assembly of the Cytochrome b6f Complex in Arabidopsis Chloroplasts

Journal of Biological Chemistry, 279(31), 32474–32482.

By: M. Page, P. Hamel, S. Gabilly, H. Zegzouti*, J. Perea*, J. Alonso*, J. Ecker*, S. Theg*, S. Christensen*, S. Merchant

Contributors: M. Page, P. Hamel, S. Gabilly, H. Zegzouti*, J. Perea*, J. Alonso*, J. Ecker*, S. Theg*, S. Christensen*, S. Merchant

MeSH headings : Alkaline Phosphatase; Amino Acid Motifs; Arabidopsis / metabolism; Arabidopsis Proteins / chemistry; Arabidopsis Proteins / metabolism; Bacterial Proteins / chemistry; Cell Membrane / metabolism; Chloroplasts / metabolism; Cyclin-Dependent Kinases / chemistry; Cytochrome b6f Complex / metabolism; Cytochromes / chemistry; Cytochromes / metabolism; Cytochromes f / chemistry; Disulfides / chemistry; Lac Operon; Membrane Proteins / chemistry; Membrane Proteins / metabolism; Models, Genetic; Mutation; Peptides / chemistry; Photosynthesis; Plastids / metabolism; Protein Conformation; Protein Structure, Tertiary; RNA, Messenger / metabolism; Sulfhydryl Compounds; Time Factors
TL;DR: It is postulate that plastid cytochrome c maturation requires CCDA, thioredoxin HCF164, and other molecules in a membrane-associated trans-thylakoid thiol-reducing pathway. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: December 19, 2019

2004 chapter

Transgene Integration: Use of Matrix Attachment Regions

In Transgenic Plants (pp. 313–326).

By: G. Allen n, S. Spiker n & W. Thompson n

MeSH headings : Biolistics / methods; Cells, Cultured; Crops, Agricultural / genetics; Genetic Markers; Genetic Vectors; Nuclear Matrix / genetics; Plants, Genetically Modified / genetics; Protoplasts / physiology; Rhizobium / genetics; Tobacco / genetics; Tobacco / growth & development
TL;DR: This chapter describes methods for the isolation of MARs and the subsequent methods allowing the investigator to incorporate MARS into transformation strategies that can both improve transformation frequency and result in predictable, stable expression of the transgenic trait. (via Semantic Scholar)
Sources: Crossref, ORCID
Added: March 24, 2019

2004 patent

Lactobacillus acidophilus nucleic acids encoding fructo-oligosaccharide utilization compounds and uses thereof

Washington, DC: U.S. Patent and Trademark Office.

Source: NC State University Libraries
Added: August 6, 2018

2004 conference paper

Tracking down the effects of a rare mutant gene in loblolly pine: a first report

2004 Paper Summit, Spring Technical and International Environmental Conference. CD-ROM published by TAPPI, Norcross, GA.

By: Q. Yu, E. Capanema, V. Batista, S. Josserand, G. Johnson, C. Nelson, S. McKeand, J. MacKay ...

Source: NC State University Libraries
Added: August 6, 2018

2004 patent

Geminivirus resistant transgenic plants

Washington, DC: U.S. Patent and Trademark Office.

By: L. Hanley-Bowdoin, B. Orozco, L. Kong & W. Gruissem

Source: NC State University Libraries
Added: August 6, 2018

2004 journal article

Flagellin is not a major defense elicitor in Ralstonia solanacearum cells or extracts applied to Arabidopsis thaliana

MOLECULAR PLANT-MICROBE INTERACTIONS, 17(6), 696–706.

By: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, . Ecker, C. Allen, A. Bent

Contributors: C. Pfund, J. Tans-Kersten, F. Dunning, J. Alonso, J. Ecker, C. Allen, A. Bent

MeSH headings : Amino Acid Sequence; Arabidopsis / growth & development; Arabidopsis / metabolism; Arabidopsis / microbiology; Arabidopsis Proteins / metabolism; Cell Division / drug effects; Cell Extracts / pharmacology; Consensus Sequence; Flagella / physiology; Flagellin / chemistry; Molecular Sequence Data; Movement; Peptides / chemistry; Peptides / pharmacology; Plant Diseases / microbiology; Protein Kinases / metabolism; Ralstonia solanacearum / cytology; Ralstonia solanacearum / pathogenicity; Ralstonia solanacearum / physiology; Seedlings / cytology; Seedlings / drug effects; Seedlings / metabolism; Tobacco / drug effects; Tobacco / microbiology; Virulence Factors / metabolism
TL;DR: The phytopathogenic bacterium Ralstonia solanacearum requires motility for full virulence, and its flagellin is a candidate pathogen-associated molecular pattern that may elicit plant defenses, but it is not this elicitor of defense-associated responses. (via Semantic Scholar)
UN Sustainable Development Goal Categories
3. Good Health and Well-being (OpenAlex)
Sources: Web Of Science, ORCID
Added: August 6, 2018

2004 review

Bacteriophage defense systems and strategies for lactic acid bacteria

[Review of ]. ADVANCES IN APPLIED MICROBIOLOGY, VOL 56, 56, 331-+.

MeSH headings : Animals; Bacteriophages / genetics; Bacteriophages / physiology; Cattle; Dairying; Humans; Lactococcus lactis / genetics; Lactococcus lactis / virology; Streptococcus Phages / genetics; Streptococcus Phages / physiology; Streptococcus thermophilus / genetics; Streptococcus thermophilus / virology
TL;DR: This chapter highlights the various defense strategies and systems that have been developed to curb the propagation and evolution of lytic phages in S. thermophilus and their bacteriophages. (via Semantic Scholar)
Source: Web Of Science
Added: August 6, 2018

2004 article

Complementing complexity

Mackay, T. F. C. (2004, November). NATURE GENETICS, Vol. 36, pp. 1145–1147.

By: T. Mackay n

MeSH headings : Animals; Animals, Outbred Strains; Anxiety / genetics; Genetic Complementation Test / methods; Genetic Variation; Mice; Quantitative Trait, Heritable
TL;DR: A new study shows that historical recombination in outbred strains combined with functional complementation tests can identify pleiotropic genes with small effects on naturally occurring variation for anxiety-related behaviors in mice. (via Semantic Scholar)
UN Sustainable Development Goal Categories
2. Zero Hunger (Web of Science)
13. Climate Action (Web of Science)
15. Life on Land (Web of Science)
Source: Web Of Science
Added: August 6, 2018

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